Non-Coding RNA Search

Ss1.1-Lym1-jns06_G12.r.3

Sequence:


               
               AGAAATCCCACTTGAAGAAAATACCTGACAAGTATTCCTCAAAACTGTCAAGGTCATTAA
AGACAAGGAAGTCTGAGCAACTCTCACAGCCAAAAAGAGCCCAAGGAGACATGACCATTA
AATATAATGTGGTGTCTTGAATGAGATACCGTGCCAGAAAAGGGACACTTGGTAAAAACT
GGAGAAATCTAAATAAAGTGTGGACTTTAGTTAGTAGAAATAAATAGAATGGTTGCAGTT
GCTCCAGAGGGATCTTAGAATAACTTACCTTGCGTTGTTGAAAGAACACCGGTTTGGGTG
TCGTAAACCTTGGTATTCAGGCCTCTGCCCTTTGGTAGCAGTATGACCATTAAGCAAGTC
ATACTGTGGACTTTATTGTTCCCTTTCTGTAATTGGGCTAATAAAACTTGATATCCTACT
TCCTTCATGGTATTGTTAGATCCAAGTGAATATTGAACATAAAATGCTTTGGAAGCCCTG
TAAAGTACTAGATAGAATGAGATAATTTCAGTTAGTTCTTATTCTGAGATCAAAACCTAA
GGGTCAGGCATGAAAAACAAAATTGTTTCCTATTTATATCTCAGACATTCTGAACTGAGT
GAGCACAGTTGTTGATATCAAGGGAAAGCTTTATTATGTAATAGGAATAATGATACTAGC
TGAGATTTACTGAGGACTAAGTGCCAAGGGCTTTTTAAGCACCTGTTTAATCCACATTAA
CAATTCCCTGAAGTAGGTACTATTGTCATCCCAATTTTAGAGCCAGAGAAACTAAGGCAC
AAAGAAATTAAGTAACTGACTCCAGTCACACAGTTAGTACAGTGACTCCCTCTTGACAGT
AGTGTTCAGTACACGTGAAGTATCCGGGCGGGTCTGGCAAGGTTAGGAAGAGGTTGAGAA
TCAGTGACAGCACTCTGGGGAATCTAGGCATGTCAGACCAAGATTTATTATTCAGAAAAG
TTAAGACAGCTGTTCCTTAGGGATCAGTTGTTTATTCCTGGAAAATGTTTTCCACTTTCT
GCAAATCTATATCTGACCTGCTGAGGAAATCGTTTGTGAAATTCATCCAGAAGGCAGAGA
AAATGTTTCATTACTTTAAATAGCAGCACTAAGCCTGTTATAGTCTCTGAATTGTCCCTT
CTTGGAGTTTGCTAGTACTTCCAATTTAGTCATTTGGGAGCTCAAAAGTATGATTTTATA
TGCCCCTCCTGATATCCTCATCTCTTGCAGAATGTATAGTTATCTCTTTTGGACTATGTA
TTACAAACATTTTAAACATAAGATCCTATCCACATATTTCATTATTATTAAACCAACATT
GTACTTACTATGTTTTGCAATACTTCCTTTATCATCTTCTAGAATTCTTCATGGACCTAA
TAGAATAAAGACTTCTTGAATTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATCCCACTTGAAGAAAATACCTGACAAGTATTCCTCAAAACTGTCAAGGTCATTAA
AGACAAGGAAGTCTGAGCAACTCTCACAGCCAAAAAGAGCCCAAGGAGACATGACCATTA
AATATAATGTGGTGTCTTGAATGAGATACCGTGCCAGAAAAGGGACACTTGGTAAAAACT
GGAGAAATCTAAATAAAGTGTGGACTTTAGTTAGTAGAAATAAATAGAATGGTTGCAGTT
GCTCCAGAGGGATCTTAGAATAACTTACCTTGCGTTGTTGAAAGAACACCGGTTTGGGTG
TCGTAAACCTTGGTATTCAGGCCTCTGCCCTTTGGTAGCAGTATGACCATTAAGCAAGTC
ATACTGTGGACTTTATTGTTCCCTTTCTGTAATTGGGCTAATAAAACTTGATATCCTACT
TCCTTCATGGTATTGTTAGATCCAAGTGAATATTGAACATAAAATGCTTTGGAAGCCCTG
TAAAGTACTAGATAGAATGAGATAATTTCAGTTAGTTCTTATTCTGAGATCAAAACCTAA
GGGTCAGGCATGAAAAACAAAATTGTTTCCTATTTATATCTCAGACATTCTGAACTGAGT
GAGCACAGTTGTTGATATCAAGGGAAAGCTTTATTATGTAATAGGAATAATGATACTAGC
TGAGATTTACTGAGGACTAAGTGCCAAGGGCTTTTTAAGCACCTGTTTAATCCACATTAA
CAATTCCCTGAAGTAGGTACTATTGTCATCCCAATTTTAGAGCCAGAGAAACTAAGGCAC
AAAGAAATTAAGTAACTGACTCCAGTCACACAGTTAGTACAGTGACTCCCTCTTGACAGT
AGTGTTCAGTACACGTGAAGTATCCGGGCGGGTCTGGCAAGGTTAGGAAGAGGTTGAGAA
TCAGTGACAGCACTCTGGGGAATCTAGGCATGTCAGACCAAGATTTATTATTCAGAAAAG
TTAAGACAGCTGTTCCTTAGGGATCAGTTGTTTATTCCTGGAAAATGTTTTCCACTTTCT
GCAAATCTATATCTGACCTGCTGAGGAAATCGTTTGTGAAATTCATCCAGAAGGCAGAGA
AAATGTTTCATTACTTTAAATAGCAGCACTAAGCCTGTTATAGTCTCTGAATTGTCCCTT
CTTGGAGTTTGCTAGTACTTCCAATTTAGTCATTTGGGAGCTCAAAAGTATGATTTTATA
TGCCCCTCCTGATATCCTCATCTCTTGCAGAATGTATAGTTATCTCTTTTGGACTATGTA
TTACAAACATTTTAAACATAAGATCCTATCCACATATTTCATTATTATTAAACCAACATT
GTACTTACTATGTTTTGCAATACTTCCTTTATCATCTTCTAGAATTCTTCATGGACCTAA
TAGAATAAAGACTTCTTGAATTCAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1404, gnl|bosTau2|chr10 (52374426-52375794)
               

               
               1-1404, gnl|Hg17|chr14 (64469598-64471448)
               

               
               1-1404, gnl|Mm7|chr12 (74742818-74744130)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1404, gnl|bosTau2|chr10 (52374426-52375794)
               

               
               1-1404, gnl|Hg17|chr14 (64469598-64471448)
               

               
               1-1404, gnl|Mm7|chr12 (74742818-74744130)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

Help | Less info


               
               ova (0.774793)
               

               
               vin (0.665115)
               

               
               sin (0.524843)
               

               
               ski (0.440205)
               

               
               cty (0.41632)
               

               
               rec (0.346141)
               

               
               tbr (0.308356)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.774793)
               

               
               vin (0.665115)
               

               
               sin (0.524843)
               

               
               ski (0.440205)
               

               
               cty (0.41632)
               

               
               rec (0.346141)
               

               
               tbr (0.308356)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-1404, gnl\|bosTau2\|chr10 (52374426-52375794)
	1-1404, gnl\|Hg17\|chr14 (64469598-64471448)
	1-1404, gnl\|Mm7\|chr12 (74742818-74744130)

	ova (0.774793)
	vin (0.665115)
	sin (0.524843)
	ski (0.440205)
	cty (0.41632)
	rec (0.346141)
	tbr (0.308356)
	lin (0.291206)
	ssp (0.271039)
	ste (0.270416)
	sug (0.254582)
	tra (0.246184)
	mgp (0.230681)
	mas (0.210305)
	hea (0.204499)
	ldo (0.194005)
	cmu (0.186393)
	mgm (0.180343)
	duo (0.172801)
	mcp (0.170648)
	isp (0.150376)
	bfe (0.149858)
	fat (0.147427)
	pty (0.142714)
	hlv (0.139256)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	ebs (0.118301)
	ecc (0.115035)
	spc (0.113366)