Ss1.1-Lym1-jns101_H08.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGGAGCTGTTTGACAGCGAAGACCCTCGGGAACGGGACTACCTAAAGACGGTCTTACA CAGAATTTACGGCAAGTTTCTGGGTCTTAGAGCATTTATCCGAAAACAGATTAACAATAT TTTTCTAAGGTTTGTTTATGAAACAGAACATTTCAATGGTGTTGCTGAACTGCTGGAAAT ACTAGGAAGTATTATCAATGGCTTTGCTTTACCTCTTAAGGCAGAACACAAACAATTCCT GGTGAAAGTGTTGATCCCTTTACACACTGTCAGGAGCTTATCACTCTTCCATGCCCAGCT GGCATATTGCATAGTACAGTTTCTGGAGAAAGATCCTTCACTCACAGAGCCAGTTATTAG GGGGTTAATGAAGTTTTGGCCCAAAACATGTAGTCAAAAAGAGGTCATGTTCCTTGGGGA GCTGGAGGAGATACTGGATGTGATTGAACCATCGCAATTTGTTAAAATCCAAGAACCTTT GTTTAAACAAATTGCCAAGTGTGTTTCTAGCCCCCATTTTCAGGTGGCAGAAAGGGCACT CTATTATTGGAATAATGAATACATCATGAGCTTGATAGAAGAAAACTCTAATGTCATCCT TCCCATCATGTTTTCCAGTCTTTATAGGATTTCAAAAGAACATTGGAATCCGGCCATTGT GGCGTTAGTGTACAACGTGTTGAAGGCGTTTATGGAAATGAACAGCACCATGTTTGATGA GCTGACAGCCACATACAAGTCAGATCGTCAGCGTGAGAAAAAGAAAGAAAAGGAGCGTGA AGAATTGTGGAAAAAACTGGAGGATCTGGAGTTAAAGAGAGGTCTTAGACGTGATGGGAT AATTCCAACTTAACAAAAATAATGACAACAACATTACTAACCTGTGGAGTCACACATTTA TGTAGTAGAAGATGGAGCAACAGTTTTCTGTATTGTGCAACTTTACAGTAGATTTCACAT TTGTTTCATTATTACAACAGCACTGTATATACCTGTCTCTAAGTAAAGGAAAAAAAAAAT AAGGACTTCAATCCAAAGTTTGGACAGTAGATTGACTTCTCAGAACTTGGCAAACATAAT CATTGTTCTAACCCTCTTAAAAAGAAAAAAAAAAAGCAGTCTTCAAAGATCTGTCAATGA AATTGCTATGTTAAAATTCCATTATCGGGAGTTCTTTATTTATCATTAGCAGAGAGTATG AAACAATTTTCAAATGTGAACAATCTTAAATTTAGCTTGTCTTTCTGCTAAGCTGTTAAA TGTATTTATAGTAAAGGAAGAAAAAAAACAGACTGTCATTTCCTTATAAGTTTGTATAAC ACCCTCCTCTGGATAACTTGACTGTAATTGGACATCTTTTCCTTTTGCACATCTTCATGA GTTGAATGTCCATGTGGAATGGGGCCATGAATTATAAAGGTCCCTGATCAAAGTATTTAC TGGAGTGAACAACTTTCCAGTAACCAGGTAGTCCTGGTACTCCTTTAGTGTTAAAATTAG GAGTAAAAGAGAACAGGTGATAAACATAGTAGGGAAGGGAGTTTGGGATTCATTCATCAG TTTATGGAGAATCCAAATCAGTGTCTTGAATCCTCAGAGAACAGGCAGTCGGACGTCGTA GGGTCAGTACTTGACCAGTATTAGTAACACACATGCCAGAGATGTTTTAAAAATGTCAGA AGACATCCTTTTGGACCATTGTGAAATAAGAAAGACAAACACTAAACAGGACAACCATGA AATTGATCACCAGGATTGTGAATCTAATTGGGAATAGAGTTGAGCAAGCAGCTTGGCCTG TTTGGAGTTGTTGCCTTACTTTTTAATATGTATTTATAAAGTATTCCAGCAAAAGAGGAT GTAGCCTCTGGGAAAAAACAAACATATTACAGTGTTTTTTGTAGATTCTCGTTCTATATC CCATCACAGCTCCAGCCCTGTTTTTAGCCAGAAAGGATTCAGGATAAACATTATTATGCA TTCTAAATTGGATGCATATTCCTAACTACTGTATTTGTTACCAAAAATGGTTCTACAAAT GCTACTGAAAAAAAAATATCTGGAAATTCCTAATGTCCTGAGTATTAATAATAAAGTTTA AAAATGCTTTTATATCAAAGGTGCATTGTGACCAAATTGTTTAAGAAAAATGAAAACAAA AAACAAAACAAAATCTAGGGCTGTATTATAGATATATCTTATTGGCTCTCTGCTTTGTAT TTAAAAGAGGAATCTTACATCTTGGGGAGTTAAAATGCTGATAAACTTGTGTACATTATG TACTTACCCAATGCAGTTGCATTACTATGTATTGAAAGATATGTGTTTGGGGATTTATTT CCAGGATGCTTTTGCTTGTTATGGACATGGCAGCAGTGAGTTGATAATCCTAAACCATCA CTTCCAGCAGTATTTGTGGTATAGAGCTGATTCTGCGTTCATGTGTTGAATTGTGATAGT AGCAAACAGGAACATATGAACTGTTGTTGCTCTTAATAGACATATGGTTATCAATACGGG ATTGTATATTTTCTTCCTTCCATTTAAGATATAAGGTAGAATATGCAGTTTTATTCTTTT CAAGAGAAAAGGAATAAAAGAAGCCACTGACCTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGGAGCTGTTTGACAGCGAAGACCCTCGGGAACGGGACTACCTAAAGACGGTCTTACA CAGAATTTACGGCAAGTTTCTGGGTCTTAGAGCATTTATCCGAAAACAGATTAACAATAT TTTTCTAAGGTTTGTTTATGAAACAGAACATTTCAATGGTGTTGCTGAACTGCTGGAAAT ACTAGGAAGTATTATCAATGGCTTTGCTTTACCTCTTAAGGCAGAACACAAACAATTCCT GGTGAAAGTGTTGATCCCTTTACACACTGTCAGGAGCTTATCACTCTTCCATGCCCAGCT GGCATATTGCATAGTACAGTTTCTGGAGAAAGATCCTTCACTCACAGAGCCAGTTATTAG GGGGTTAATGAAGTTTTGGCCCAAAACATGTAGTCAAAAAGAGGTCATGTTCCTTGGGGA GCTGGAGGAGATACTGGATGTGATTGAACCATCGCAATTTGTTAAAATCCAAGAACCTTT GTTTAAACAAATTGCCAAGTGTGTTTCTAGCCCCCATTTTCAGGTGGCAGAAAGGGCACT CTATTATTGGAATAATGAATACATCATGAGCTTGATAGAAGAAAACTCTAATGTCATCCT TCCCATCATGTTTTCCAGTCTTTATAGGATTTCAAAAGAACATTGGAATCCGGCCATTGT GGCGTTAGTGTACAACGTGTTGAAGGCGTTTATGGAAATGAACAGCACCATGTTTGATGA GCTGACAGCCACATACAAGTCAGATCGTCAGCGTGAGAAAAAGAAAGAAAAGGAGCGTGA AGAATTGTGGAAAAAACTGGAGGATCTGGAGTTAAAGAGAGGTCTTAGACGTGATGGGAT AATTCCAACTTAACAAAAATAATGACAACAACATTACTAACCTGTGGAGTCACACATTTA TGTAGTAGAAGATGGAGCAACAGTTTTCTGTATTGTGCAACTTTACAGTAGATTTCACAT TTGTTTCATTATTACAACAGCACTGTATATACCTGTCTCTAAGTAAAGGAAAAAAAAAAT AAGGACTTCAATCCAAAGTTTGGACAGTAGATTGACTTCTCAGAACTTGGCAAACATAAT CATTGTTCTAACCCTCTTAAAAAGAAAAAAAAAAAGCAGTCTTCAAAGATCTGTCAATGA AATTGCTATGTTAAAATTCCATTATCGGGAGTTCTTTATTTATCATTAGCAGAGAGTATG AAACAATTTTCAAATGTGAACAATCTTAAATTTAGCTTGTCTTTCTGCTAAGCTGTTAAA TGTATTTATAGTAAAGGAAGAAAAAAAACAGACTGTCATTTCCTTATAAGTTTGTATAAC ACCCTCCTCTGGATAACTTGACTGTAATTGGACATCTTTTCCTTTTGCACATCTTCATGA GTTGAATGTCCATGTGGAATGGGGCCATGAATTATAAAGGTCCCTGATCAAAGTATTTAC TGGAGTGAACAACTTTCCAGTAACCAGGTAGTCCTGGTACTCCTTTAGTGTTAAAATTAG GAGTAAAAGAGAACAGGTGATAAACATAGTAGGGAAGGGAGTTTGGGATTCATTCATCAG TTTATGGAGAATCCAAATCAGTGTCTTGAATCCTCAGAGAACAGGCAGTCGGACGTCGTA GGGTCAGTACTTGACCAGTATTAGTAACACACATGCCAGAGATGTTTTAAAAATGTCAGA AGACATCCTTTTGGACCATTGTGAAATAAGAAAGACAAACACTAAACAGGACAACCATGA AATTGATCACCAGGATTGTGAATCTAATTGGGAATAGAGTTGAGCAAGCAGCTTGGCCTG TTTGGAGTTGTTGCCTTACTTTTTAATATGTATTTATAAAGTATTCCAGCAAAAGAGGAT GTAGCCTCTGGGAAAAAACAAACATATTACAGTGTTTTTTGTAGATTCTCGTTCTATATC CCATCACAGCTCCAGCCCTGTTTTTAGCCAGAAAGGATTCAGGATAAACATTATTATGCA TTCTAAATTGGATGCATATTCCTAACTACTGTATTTGTTACCAAAAATGGTTCTACAAAT GCTACTGAAAAAAAAATATCTGGAAATTCCTAATGTCCTGAGTATTAATAATAAAGTTTA AAAATGCTTTTATATCAAAGGTGCATTGTGACCAAATTGTTTAAGAAAAATGAAAACAAA AAACAAAACAAAATCTAGGGCTGTATTATAGATATATCTTATTGGCTCTCTGCTTTGTAT TTAAAAGAGGAATCTTACATCTTGGGGAGTTAAAATGCTGATAAACTTGTGTACATTATG TACTTACCCAATGCAGTTGCATTACTATGTATTGAAAGATATGTGTTTGGGGATTTATTT CCAGGATGCTTTTGCTTGTTATGGACATGGCAGCAGTGAGTTGATAATCCTAAACCATCA CTTCCAGCAGTATTTGTGGTATAGAGCTGATTCTGCGTTCATGTGTTGAATTGTGATAGT AGCAAACAGGAACATATGAACTGTTGTTGCTCTTAATAGACATATGGTTATCAATACGGG ATTGTATATTTTCTTCCTTCCATTTAAGATATAAGGTAGAATATGCAGTTTTATTCTTTT CAAGAGAAAAGGAATAAAAGAAGCCACTGACCTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1383-2080, - strand, RNAz p=0.991552 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1383-2080, - strand, RNAz p=0.991552 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 1-148, gnl|bosTau2|chr10 (49209628-49209481) | |
| 1-148, gnl|canFam2|chr8 (40992907-40993034) | |
| 1-148, gnl|danRer3|chr13 (40355889-40355761) | |
| 1-148, gnl|dasNov1|scaffold_220489 (1012-884) | |
| 1-148, gnl|echTel1|scaffold_314336 (226992-227119) | |
| 1-148, gnl|fr1|chrUn (165787951-165787823) | |
| 1-148, gnl|galGal2|chr5 (50132164-50132036) | |
| 1-148, gnl|Hg17|chr14 (62933185-62933025) | |
| 1-148, gnl|hg17|chr7 (56147301-56147429) | |
| 1-148, gnl|loxAfr1|scaffold_15269 (3147-3019) | |
| 1-148, gnl|mm7|chr12 (73428192-73428320) | |
| 1-148, gnl|Mm7|chr12 (73428317-73428187) | |
| 1-148, gnl|monDom2|scaffold_8 (76930758-76930886) | |
| 1-148, gnl|oryCun1|scaffold_175195 (21137-21265) | |
| 1-148, gnl|panTro1|chr6 (57844316-57844444) | |
| 1-148, gnl|rheMac2|chr7 (126386889-126387017) | |
| 1-148, gnl|rn3|chr6 (98072243-98072371) | |
| 1-148, gnl|tetNig1|chr10 (12720064-12720192) | |
| 1-148, gnl|xenTro1|scaffold_1474 (60409-60281) | |
| 188-309, gnl|bosTau2|chr10 (49207425-49207304) | |
| 188-309, gnl|canFam2|chr8 (40991702-40991786) | |
| 188-309, gnl|danRer3|chr13 (40357884-40357803) | |
| 188-309, gnl|dasNov1|scaffold_145972 (3915-3996) | |
| 188-309, gnl|echTel1|scaffold_314336 (226823-226906) | |
| 188-309, gnl|fr1|chrUn (165788392-165788308) | |
| 188-309, gnl|galGal2|chr5 (50133012-50132928) | |
| 188-309, gnl|Hg17|chr14 (62930401-62930277) | |
| 188-309, gnl|hg17|chr7 (56147134-56147214) | |
| 188-309, gnl|loxAfr1|scaffold_15269 (4396-4312) | |
| 188-309, gnl|mm7|chr12 (73426974-73427054) | |
| 188-309, gnl|Mm7|chr12 (73427079-73426958) | |
| 188-309, gnl|monDom2|scaffold_8 (76929462-76929526) | |
| 188-309, gnl|oryCun1|scaffold_175195 (19918-19998) | |
| 188-309, gnl|panTro1|chr6 (57844149-57844229) | |
| 188-309, gnl|rheMac2|chr7 (126384329-126384409) | |
| 188-309, gnl|rn3|chr6 (98071039-98071119) | |
| 188-309, gnl|tetNig1|chr10 (12719435-12719519) | |
| 188-309, gnl|xenTro1|scaffold_1474 (62654-62570) | |
| 522-652, gnl|bosTau2|chr10 (49200823-49200693) | |
| 522-652, gnl|canFam2|chr8 (40983383-40983564) | |
| 522-652, gnl|danRer3|chr20 (23583667-23583521) | |
| 522-652, gnl|dasNov1|scaffold_78304 (3028-3205) | |
| 522-652, gnl|echTel1|scaffold_314453 (90787-90967) | |
| 522-652, gnl|fr1|chrUn (165789164-165789029) | |
| 522-652, gnl|galGal2|chr5 (50137844-50137675) | |
| 522-652, gnl|hg17|chr14 (62920899-62921077) | |
| 522-652, gnl|Hg17|chr14 (62921044-62920914) | |
| 522-652, gnl|loxAfr1|scaffold_15269 (12424-12246) | |
| 522-652, gnl|mm7|chr12 (73420743-73420921) | |
| 522-652, gnl|Mm7|chr12 (73420887-73420758) | |
| 522-652, gnl|monDom2|scaffold_8 (76911626-76911801) | |
| 522-652, gnl|oryCun1|scaffold_175195 (13272-13453) | |
| 522-652, gnl|panTro1|chr15 (62479207-62479385) | |
| 522-652, gnl|rheMac2|chr7 (126374858-126375036) | |
| 522-652, gnl|rn3|chr6 (98063783-98063960) | |
| 522-652, gnl|tetNig1|chr10 (12718609-12718744) | |
| 522-652, gnl|xenTro1|scaffold_1474 (68613-68445) | |
| 753-1645, gnl|bosTau2|chr10 (49193505-49192613) | |
| 753-1645, gnl|Hg17|chr14 (62912580-62911716) | |
| 753-1645, gnl|Mm7|chr12 (73412271-73411430) | |
| 1646-2616, gnl|bosTau2|chr10 (49192510-49191547) | |
| 1646-2616, gnl|Hg17|chr14 (62911674-62910693) | |
| 1646-2616, gnl|Mm7|chr12 (73411390-73410469) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-148, gnl|bosTau2|chr10 (49209628-49209481) | |
| 1-148, gnl|canFam2|chr8 (40992907-40993034) | |
| 1-148, gnl|danRer3|chr13 (40355889-40355761) | |
| 1-148, gnl|dasNov1|scaffold_220489 (1012-884) | |
| 1-148, gnl|echTel1|scaffold_314336 (226992-227119) | |
| 1-148, gnl|fr1|chrUn (165787951-165787823) | |
| 1-148, gnl|galGal2|chr5 (50132164-50132036) | |
| 1-148, gnl|Hg17|chr14 (62933185-62933025) | |
| 1-148, gnl|hg17|chr7 (56147301-56147429) | |
| 1-148, gnl|loxAfr1|scaffold_15269 (3147-3019) | |
| 1-148, gnl|mm7|chr12 (73428192-73428320) | |
| 1-148, gnl|Mm7|chr12 (73428317-73428187) | |
| 1-148, gnl|monDom2|scaffold_8 (76930758-76930886) | |
| 1-148, gnl|oryCun1|scaffold_175195 (21137-21265) | |
| 1-148, gnl|panTro1|chr6 (57844316-57844444) | |
| 1-148, gnl|rheMac2|chr7 (126386889-126387017) | |
| 1-148, gnl|rn3|chr6 (98072243-98072371) | |
| 1-148, gnl|tetNig1|chr10 (12720064-12720192) | |
| 1-148, gnl|xenTro1|scaffold_1474 (60409-60281) | |
| 188-309, gnl|bosTau2|chr10 (49207425-49207304) | |
| 188-309, gnl|canFam2|chr8 (40991702-40991786) | |
| 188-309, gnl|danRer3|chr13 (40357884-40357803) | |
| 188-309, gnl|dasNov1|scaffold_145972 (3915-3996) | |
| 188-309, gnl|echTel1|scaffold_314336 (226823-226906) | |
| 188-309, gnl|fr1|chrUn (165788392-165788308) | |
| 188-309, gnl|galGal2|chr5 (50133012-50132928) | |
| 188-309, gnl|Hg17|chr14 (62930401-62930277) | |
| 188-309, gnl|hg17|chr7 (56147134-56147214) | |
| 188-309, gnl|loxAfr1|scaffold_15269 (4396-4312) | |
| 188-309, gnl|mm7|chr12 (73426974-73427054) | |
| 188-309, gnl|Mm7|chr12 (73427079-73426958) | |
| 188-309, gnl|monDom2|scaffold_8 (76929462-76929526) | |
| 188-309, gnl|oryCun1|scaffold_175195 (19918-19998) | |
| 188-309, gnl|panTro1|chr6 (57844149-57844229) | |
| 188-309, gnl|rheMac2|chr7 (126384329-126384409) | |
| 188-309, gnl|rn3|chr6 (98071039-98071119) | |
| 188-309, gnl|tetNig1|chr10 (12719435-12719519) | |
| 188-309, gnl|xenTro1|scaffold_1474 (62654-62570) | |
| 522-652, gnl|bosTau2|chr10 (49200823-49200693) | |
| 522-652, gnl|canFam2|chr8 (40983383-40983564) | |
| 522-652, gnl|danRer3|chr20 (23583667-23583521) | |
| 522-652, gnl|dasNov1|scaffold_78304 (3028-3205) | |
| 522-652, gnl|echTel1|scaffold_314453 (90787-90967) | |
| 522-652, gnl|fr1|chrUn (165789164-165789029) | |
| 522-652, gnl|galGal2|chr5 (50137844-50137675) | |
| 522-652, gnl|hg17|chr14 (62920899-62921077) | |
| 522-652, gnl|Hg17|chr14 (62921044-62920914) | |
| 522-652, gnl|loxAfr1|scaffold_15269 (12424-12246) | |
| 522-652, gnl|mm7|chr12 (73420743-73420921) | |
| 522-652, gnl|Mm7|chr12 (73420887-73420758) | |
| 522-652, gnl|monDom2|scaffold_8 (76911626-76911801) | |
| 522-652, gnl|oryCun1|scaffold_175195 (13272-13453) | |
| 522-652, gnl|panTro1|chr15 (62479207-62479385) | |
| 522-652, gnl|rheMac2|chr7 (126374858-126375036) | |
| 522-652, gnl|rn3|chr6 (98063783-98063960) | |
| 522-652, gnl|tetNig1|chr10 (12718609-12718744) | |
| 522-652, gnl|xenTro1|scaffold_1474 (68613-68445) | |
| 753-1645, gnl|bosTau2|chr10 (49193505-49192613) | |
| 753-1645, gnl|Hg17|chr14 (62912580-62911716) | |
| 753-1645, gnl|Mm7|chr12 (73412271-73411430) | |
| 1646-2616, gnl|bosTau2|chr10 (49192510-49191547) | |
| 1646-2616, gnl|Hg17|chr14 (62911674-62910693) | |
| 1646-2616, gnl|Mm7|chr12 (73411390-73410469) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| kid (0.518941) | |
| elu (0.385356) | |
| fty (0.351679) | |
| rec (0.346141) | |
| vin (0.332557) | |
| isp (0.300752) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| tra (0.246184) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| clu (0.119646) | |
| med (0.116252) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.518941) | |
| elu (0.385356) | |
| fty (0.351679) | |
| rec (0.346141) | |
| vin (0.332557) | |
| isp (0.300752) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| tra (0.246184) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| clu (0.119646) | |
| med (0.116252) | |
| spc (0.113366) | |
| ldo (0.0970026) |