Ss1.1-Lym1-jns104_A05.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGGGACCAGGACCTGAGCGTGAATCTGAGGCCGGAGGCTTCCCGGGACCCGCTGGGC GTCGAGCCCCCCTCCCCGAGACATCCACAAATTTTCTTCCCACTAATTGGGAGAAGACCC ATTGGCTGAATGGCAGCTGTAGATGACTTGCAGTTTGAAGAATTTGCTGATTCAGCCACT TCTCTAGCAGCAAACCCAGATGCCACCACGATCAGCATTGAGGATACTGGTGAAACCCCC AAACATCAGTCAGGACCCTCAAGAGGCTCAGGGAGAGAAGAGGATGATGAACTACTAGGA AATGATGACTCGGACAAAACTGAGTTACTTGCTGGACAGAAGAAAAGCTCCCCCTTCTGG ACATTTGAGTACTATCAAACATTCTTTGATGTAGACACTTACCAGGTCTTTGACAGAATA AAAGGGTCTCTTCTACCAATACCAGGAAAAAACTTTGTGAGGTTATATATCCGCAGCAAT CCAGATCTCTATGGCCCCTTTTGGATATGTGCCACACTGGTCTTTGCCATAGCAATTAGT GGGAATCTTTCCAACTTCTTAATCCATCTGGGAGAGAAAACGTACCATTATGTGCCTGAA TTCCGAAAAGTGTCCATTGCGGCCACAATCATCTACGCCTACGCCTGGCTGGTCCCCCTC GCTCTCTGGGGTTTCCTCGTGTGGAGAAACAGCAAAGTGATGAACATCGTTTCCTACTCG TTTTTGGAGATCGTGTGCGTCTACGGGTACTCGCTCTTCATTTACATTCCCACGGCGATA CTGTGGATCATCCCCCAGAAAGCTGTCCGCTGGATTCTCGTCACGATTGCCCTGGGCATC TCGGGCTCTGTCTTGGCAATGACATTTTGGCCAGCTGTTCGTGAGGACAACCGACGCATC GCGTTGGCCACTATTGTGACAATTGTGCTGCTTCACATGCTACTCTCTGTGGGCTGCTTG GCCTACTTTTTTGATGCACCAGAGATGGACCATCTCCCACCAGCCACCGCAGCTCCAAAC CAAACAGTTGCAGCAGTCAAGTCCAGCTAAAGAGGAAAGGGAGCGATTGTATTTGCATCT CCTCGCGGTGAGTTCTCTTTGACGGTTTGCGGAGTGTGGTTCTTTTGGACATGGCATCCA CTGCAGGAAAGCAGAATGACCAAAGGCAGCAGGAACACTGATGGCGTGGCCCCAACCCCC GATATCAGGATAGTGCTGCCCTGAAGCCTGAATCACCTATTTAATAAACAAATTAAATGT GGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGGGACCAGGACCTGAGCGTGAATCTGAGGCCGGAGGCTTCCCGGGACCCGCTGGGC GTCGAGCCCCCCTCCCCGAGACATCCACAAATTTTCTTCCCACTAATTGGGAGAAGACCC ATTGGCTGAATGGCAGCTGTAGATGACTTGCAGTTTGAAGAATTTGCTGATTCAGCCACT TCTCTAGCAGCAAACCCAGATGCCACCACGATCAGCATTGAGGATACTGGTGAAACCCCC AAACATCAGTCAGGACCCTCAAGAGGCTCAGGGAGAGAAGAGGATGATGAACTACTAGGA AATGATGACTCGGACAAAACTGAGTTACTTGCTGGACAGAAGAAAAGCTCCCCCTTCTGG ACATTTGAGTACTATCAAACATTCTTTGATGTAGACACTTACCAGGTCTTTGACAGAATA AAAGGGTCTCTTCTACCAATACCAGGAAAAAACTTTGTGAGGTTATATATCCGCAGCAAT CCAGATCTCTATGGCCCCTTTTGGATATGTGCCACACTGGTCTTTGCCATAGCAATTAGT GGGAATCTTTCCAACTTCTTAATCCATCTGGGAGAGAAAACGTACCATTATGTGCCTGAA TTCCGAAAAGTGTCCATTGCGGCCACAATCATCTACGCCTACGCCTGGCTGGTCCCCCTC GCTCTCTGGGGTTTCCTCGTGTGGAGAAACAGCAAAGTGATGAACATCGTTTCCTACTCG TTTTTGGAGATCGTGTGCGTCTACGGGTACTCGCTCTTCATTTACATTCCCACGGCGATA CTGTGGATCATCCCCCAGAAAGCTGTCCGCTGGATTCTCGTCACGATTGCCCTGGGCATC TCGGGCTCTGTCTTGGCAATGACATTTTGGCCAGCTGTTCGTGAGGACAACCGACGCATC GCGTTGGCCACTATTGTGACAATTGTGCTGCTTCACATGCTACTCTCTGTGGGCTGCTTG GCCTACTTTTTTGATGCACCAGAGATGGACCATCTCCCACCAGCCACCGCAGCTCCAAAC CAAACAGTTGCAGCAGTCAAGTCCAGCTAAAGAGGAAAGGGAGCGATTGTATTTGCATCT CCTCGCGGTGAGTTCTCTTTGACGGTTTGCGGAGTGTGGTTCTTTTGGACATGGCATCCA CTGCAGGAAAGCAGAATGACCAAAGGCAGCAGGAACACTGATGGCGTGGCCCCAACCCCC GATATCAGGATAGTGCTGCCCTGAAGCCTGAATCACCTATTTAATAAACAAATTAAATGT GGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 159-324, gnl|bosTau2|chr3 (61014305-61014140) | |
| 159-324, gnl|canFam2|chr5 (58125958-58125770) | |
| 159-324, gnl|danRer3|chr2 (18061413-18061568) | |
| 159-324, gnl|dasNov1|scaffold_18262 (37166-37354) | |
| 159-324, gnl|echTel1|scaffold_313703 (52784-52597) | |
| 159-324, gnl|galGal2|chr8 (25349482-25349657) | |
| 159-324, gnl|hg17|chr1 (54060793-54060981) | |
| 159-324, gnl|Hg17|chr1 (54060972-54060807) | |
| 159-324, gnl|loxAfr1|scaffold_78294 (7113-7300) | |
| 159-324, gnl|mm7|chr4 (106695560-106695372) | |
| 159-324, gnl|Mm7|chr4 (106695379-106695544) | |
| 159-324, gnl|oryCun1|scaffold_213610 (43149-42961) | |
| 159-324, gnl|panTro1|chr1 (52310842-52311030) | |
| 159-324, gnl|rheMac2|chr1 (56754723-56754911) | |
| 159-324, gnl|rn3|chr5 (128434448-128434260) | |
| 159-324, gnl|xenTro1|scaffold_197 (917847-918023) | |
| 609-776, gnl|bosTau2|chr3 (61001822-61001655) | |
| 609-776, gnl|canFam2|chr5 (58139415-58139226) | |
| 609-776, gnl|danRer3|chr2 (18059989-18060168) | |
| 609-776, gnl|dasNov1|scaffold_18262 (11059-11250) | |
| 609-776, gnl|echTel1|scaffold_313703 (66818-66629) | |
| 609-776, gnl|fr1|chrUn (149152395-149152582) | |
| 609-776, gnl|galGal2|chr8 (25347662-25347843) | |
| 609-776, gnl|hg17|chr1 (54044435-54044626) | |
| 609-776, gnl|Hg17|chr1 (54044620-54044453) | |
| 609-776, gnl|loxAfr1|scaffold_31231 (42235-42427) | |
| 609-776, gnl|mm7|chr4 (106721136-106720945) | |
| 609-776, gnl|Mm7|chr4 (106720949-106721116) | |
| 609-776, gnl|monDom2|scaffold_244 (192523-192731) | |
| 609-776, gnl|oryCun1|scaffold_213610 (63599-63408) | |
| 609-776, gnl|panTro1|chr1_random (69826212-69826403) | |
| 609-776, gnl|rheMac2|chr1 (56736967-56737158) | |
| 609-776, gnl|rn3|chr5 (128452291-128452100) | |
| 609-776, gnl|tetNig1|chrUn_random (157943053-157943236) | |
| 609-776, gnl|xenTro1|scaffold_197 (914462-914638) | |
| 777-961, gnl|bosTau2|chr3 (61001313-61001129) | |
| 777-961, gnl|canFam2|chr5 (58139967-58139745) | |
| 777-961, gnl|danRer3|chr2 (18059482-18059672) | |
| 777-961, gnl|dasNov1|scaffold_18262 (10466-10688) | |
| 777-961, gnl|echTel1|scaffold_313703 (67366-67147) | |
| 777-961, gnl|fr1|chrUn (149151856-149152060) | |
| 777-961, gnl|galGal2|chr8 (25346898-25347123) | |
| 777-961, gnl|hg17|chr1 (54043869-54044091) | |
| 777-961, gnl|Hg17|chr1 (54044077-54043893) | |
| 777-961, gnl|loxAfr1|scaffold_31231 (41663-41889) | |
| 777-961, gnl|mm7|chr4 (106721636-106721436) | |
| 777-961, gnl|Mm7|chr4 (106721447-106721631) | |
| 777-961, gnl|monDom2|scaffold_244 (191255-191466) | |
| 777-961, gnl|oryCun1|scaffold_213610 (64050-63824) | |
| 777-961, gnl|panTro1|chr1_random (69825646-69825868) | |
| 777-961, gnl|rheMac2|chr1 (56736401-56736623) | |
| 777-961, gnl|rn3|chr5 (128452816-128452616) | |
| 777-961, gnl|xenTro1|scaffold_197 (912528-912729) | |
| 1091-1266, gnl|bosTau2|chr3 (60986212-60986033) | |
| 1091-1266, gnl|Hg17|chr1 (54029966-54029795) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 159-324, gnl|bosTau2|chr3 (61014305-61014140) | |
| 159-324, gnl|canFam2|chr5 (58125958-58125770) | |
| 159-324, gnl|danRer3|chr2 (18061413-18061568) | |
| 159-324, gnl|dasNov1|scaffold_18262 (37166-37354) | |
| 159-324, gnl|echTel1|scaffold_313703 (52784-52597) | |
| 159-324, gnl|galGal2|chr8 (25349482-25349657) | |
| 159-324, gnl|hg17|chr1 (54060793-54060981) | |
| 159-324, gnl|Hg17|chr1 (54060972-54060807) | |
| 159-324, gnl|loxAfr1|scaffold_78294 (7113-7300) | |
| 159-324, gnl|mm7|chr4 (106695560-106695372) | |
| 159-324, gnl|Mm7|chr4 (106695379-106695544) | |
| 159-324, gnl|oryCun1|scaffold_213610 (43149-42961) | |
| 159-324, gnl|panTro1|chr1 (52310842-52311030) | |
| 159-324, gnl|rheMac2|chr1 (56754723-56754911) | |
| 159-324, gnl|rn3|chr5 (128434448-128434260) | |
| 159-324, gnl|xenTro1|scaffold_197 (917847-918023) | |
| 609-776, gnl|bosTau2|chr3 (61001822-61001655) | |
| 609-776, gnl|canFam2|chr5 (58139415-58139226) | |
| 609-776, gnl|danRer3|chr2 (18059989-18060168) | |
| 609-776, gnl|dasNov1|scaffold_18262 (11059-11250) | |
| 609-776, gnl|echTel1|scaffold_313703 (66818-66629) | |
| 609-776, gnl|fr1|chrUn (149152395-149152582) | |
| 609-776, gnl|galGal2|chr8 (25347662-25347843) | |
| 609-776, gnl|hg17|chr1 (54044435-54044626) | |
| 609-776, gnl|Hg17|chr1 (54044620-54044453) | |
| 609-776, gnl|loxAfr1|scaffold_31231 (42235-42427) | |
| 609-776, gnl|mm7|chr4 (106721136-106720945) | |
| 609-776, gnl|Mm7|chr4 (106720949-106721116) | |
| 609-776, gnl|monDom2|scaffold_244 (192523-192731) | |
| 609-776, gnl|oryCun1|scaffold_213610 (63599-63408) | |
| 609-776, gnl|panTro1|chr1_random (69826212-69826403) | |
| 609-776, gnl|rheMac2|chr1 (56736967-56737158) | |
| 609-776, gnl|rn3|chr5 (128452291-128452100) | |
| 609-776, gnl|tetNig1|chrUn_random (157943053-157943236) | |
| 609-776, gnl|xenTro1|scaffold_197 (914462-914638) | |
| 777-961, gnl|bosTau2|chr3 (61001313-61001129) | |
| 777-961, gnl|canFam2|chr5 (58139967-58139745) | |
| 777-961, gnl|danRer3|chr2 (18059482-18059672) | |
| 777-961, gnl|dasNov1|scaffold_18262 (10466-10688) | |
| 777-961, gnl|echTel1|scaffold_313703 (67366-67147) | |
| 777-961, gnl|fr1|chrUn (149151856-149152060) | |
| 777-961, gnl|galGal2|chr8 (25346898-25347123) | |
| 777-961, gnl|hg17|chr1 (54043869-54044091) | |
| 777-961, gnl|Hg17|chr1 (54044077-54043893) | |
| 777-961, gnl|loxAfr1|scaffold_31231 (41663-41889) | |
| 777-961, gnl|mm7|chr4 (106721636-106721436) | |
| 777-961, gnl|Mm7|chr4 (106721447-106721631) | |
| 777-961, gnl|monDom2|scaffold_244 (191255-191466) | |
| 777-961, gnl|oryCun1|scaffold_213610 (64050-63824) | |
| 777-961, gnl|panTro1|chr1_random (69825646-69825868) | |
| 777-961, gnl|rheMac2|chr1 (56736401-56736623) | |
| 777-961, gnl|rn3|chr5 (128452816-128452616) | |
| 777-961, gnl|xenTro1|scaffold_197 (912528-912729) | |
| 1091-1266, gnl|bosTau2|chr3 (60986212-60986033) | |
| 1091-1266, gnl|Hg17|chr1 (54029966-54029795) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| elu (0.385356) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| eru (0.240096) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| eru (0.240096) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |