Non-Coding RNA Search

Ss1.1-Lym1-jns104_H02.f.5

Sequence:


               
               TCTGAACGAGAAACAAGTGCATTTGGAACAGGAAATAAGAGGAGAAGTGAAACTGTTGAA
TAACGTCACGAATGATCTTAGGCTGAAGGACTGGGAGCATTCTCAGACACTGAAAAATAT
CACTTTAGTTCAAGGTCCTCCTGGACCTCCAGGTGAAAAAGGAGATAGAGGTCCTGCTGG
AGAAGTTGGTCCACGCGGCATTCCAGGTCCACTAGGTCCTCCAGGTCTTAAAGGTGATCG
GGGATCAATTGGCTTTCCTGGAAGTCGAGGATTCCCAGGACCAATGGGGAAGACCGGGAG
GCCAGGAAATCCTGGACAAAAAGGCCAGAAGGGAGAAAAAGGGAGTGGAAGCATGCTAAA
ACCATCTAAAACAGTTCGTCTGGTTGGTGGTAGTGGCCCTCACGAAGGCAGAGTGGAAAT
TTTCCATGATGGCCAGTGGGGTACAGTTTGTGATGACCGCTGGGAATTGCGTGGTGGACT
GGTCATCTGCAGGAGTTTGGGATACCAGGGTGTTAAAAATGTGCATAAACAAGCTTACTT
TGGAGCAGGTACTGGTCCAATATGGCTGAATGATGTGTTTTGTTTTGGGAGAGAATCATC
TATTGAAGAATGTAATATTAGACAGTGGGGTGTGAGAACCTGTTCACATGCTGAAGATGC
TGGAGTCACCTGCACTACATAATGTATCGTATTTTCATTCACATTTATGAAATTGTTGCA
AAATGATTTTTATTATTTTGCTTCATTAAAACAAGTTTATTGAACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGAACGAGAAACAAGTGCATTTGGAACAGGAAATAAGAGGAGAAGTGAAACTGTTGAA
TAACGTCACGAATGATCTTAGGCTGAAGGACTGGGAGCATTCTCAGACACTGAAAAATAT
CACTTTAGTTCAAGGTCCTCCTGGACCTCCAGGTGAAAAAGGAGATAGAGGTCCTGCTGG
AGAAGTTGGTCCACGCGGCATTCCAGGTCCACTAGGTCCTCCAGGTCTTAAAGGTGATCG
GGGATCAATTGGCTTTCCTGGAAGTCGAGGATTCCCAGGACCAATGGGGAAGACCGGGAG
GCCAGGAAATCCTGGACAAAAAGGCCAGAAGGGAGAAAAAGGGAGTGGAAGCATGCTAAA
ACCATCTAAAACAGTTCGTCTGGTTGGTGGTAGTGGCCCTCACGAAGGCAGAGTGGAAAT
TTTCCATGATGGCCAGTGGGGTACAGTTTGTGATGACCGCTGGGAATTGCGTGGTGGACT
GGTCATCTGCAGGAGTTTGGGATACCAGGGTGTTAAAAATGTGCATAAACAAGCTTACTT
TGGAGCAGGTACTGGTCCAATATGGCTGAATGATGTGTTTTGTTTTGGGAGAGAATCATC
TATTGAAGAATGTAATATTAGACAGTGGGGTGTGAGAACCTGTTCACATGCTGAAGATGC
TGGAGTCACCTGCACTACATAATGTATCGTATTTTCATTCACATTTATGAAATTGTTGCA
AAATGATTTTTATTATTTTGCTTCATTAAAACAAGTTTATTGAACATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|192738|gb|AAA37464.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|192738|gb|AAA37464.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               81-200, + strand, RNAz p=0.603213

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, + strand, RNAz p=0.603213

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               81-289, gnl|bosTau2|chr14 (9519956-9519750)
               


               
               545-768, gnl|bosTau2|chr27 (13278078-13277856)
               

               
               545-768, gnl|Hg17|chr8 (16012102-16011877)
               

               
               545-768, gnl|Mm7|chr8 (38372536-38372310)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-289, gnl|bosTau2|chr14 (9519956-9519750)
               


               
               545-768, gnl|bosTau2|chr27 (13278078-13277856)
               

               
               545-768, gnl|Hg17|chr8 (16012102-16011877)
               

               
               545-768, gnl|Mm7|chr8 (38372536-38372310)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               che (0.272628)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               ova (0.129132)

	81-289, gnl\|bosTau2\|chr14 (9519956-9519750)

	545-768, gnl\|bosTau2\|chr27 (13278078-13277856)
	545-768, gnl\|Hg17\|chr8 (16012102-16011877)
	545-768, gnl\|Mm7\|chr8 (38372536-38372310)