Ss1.1-Lym1-jns110_A06.f.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGTCCTCTCCAACGTGAAGTTCATTCAAGAGAAGAAATTAATAGGGCGATACTTCGAT GAAATCAGCCAAGACACGGGCAAGTACTGTTTTGGAGTTGAAGATACACTAAAGGCTTTA GAAATGGGAGCTGTAGAGATTCTAATAGTCTATGAAAACCTGGATATAATGAGATATGTT CTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTCTATCTAACTCCAGAACAAGAGAAG GATAAATCTCATTTTACAGACAAAGAGACAGGACAAGAACATGAGCTGATTGAGAGCATG CCCCTGCTGGAATGGTTTGCTAACAATTATAAAAAATTTGGAGCTACGTTGGAAATTGTC ACAGATAAGTCACAAGAAGGATCCCAATTTGTGAAAGGATTTGGTGGAATTGGAGGTATC TTGCGGTACCGAGTAGATTTCCAGGGAATGGAATACCAAGGAGGAGATGATGAATTTTTT GACCTTGATGACTACTAGGTAGTCGACATGGGTCCGGCAAAACGTGCCTCACCCTCCAGC ATCCAACCCAAGGAGCATACCCGTGGTGGAATCCAAACAGATCCCTGCCTTACAATTGGA ACACTTCCGGAACTTAATCCATGAGCATTGGATATTGAAAAGAAAACCGAAACAAAACCA GACCCAACCCTACACTTTGGTTTGTCATGGTGTCAGCGCAGCAGCCTACAACTAAGTTCC TAAATGCCACTTTGGACTAATTTAAAAAGAATCCCAGTTTTTACTTTTACTCGATGGTGA AATTGGTTGCTCTTGTATTTTATGAAAAAAAAAAAATGATTTTTTTAACCTTCATACATA GAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAATGAGATCATACT GGTTTGTTTCTTATTTTGATTGGAGAAAAATTAAATTGCTGCATTTCGCAGTGACCCATT TACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATATATGTGGTGAAATGTTGGAAC CATTTCTCTCTCGGTCTCTGTTTAATGTTGAAAGGGTGAGCTAATAGGAGACAGATTCAA CTTCACTCCCTCACACTACCCTCCCCCTCCAGACCGTCACTTTCAAGGATGCAGATTGCA TTGCAAAGACAAACTGACACATGAAGCATTTGGGCCAGTGCTGTTACTTTCAATCTGTTT TGCTGGCGCATTCGCGCCCGGGGTTTGGGAGCCCTTAACATCAATTGCTTTGACAAGGGT TCGCATAGTCTTGCCTACTAAAAACAGTTTGGGATGGATATGATGGGGCTTCTGTGCTAT TGCTGGGATTGGGAGAAATAAAACATGCAATTTAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGTCCTCTCCAACGTGAAGTTCATTCAAGAGAAGAAATTAATAGGGCGATACTTCGAT GAAATCAGCCAAGACACGGGCAAGTACTGTTTTGGAGTTGAAGATACACTAAAGGCTTTA GAAATGGGAGCTGTAGAGATTCTAATAGTCTATGAAAACCTGGATATAATGAGATATGTT CTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTCTATCTAACTCCAGAACAAGAGAAG GATAAATCTCATTTTACAGACAAAGAGACAGGACAAGAACATGAGCTGATTGAGAGCATG CCCCTGCTGGAATGGTTTGCTAACAATTATAAAAAATTTGGAGCTACGTTGGAAATTGTC ACAGATAAGTCACAAGAAGGATCCCAATTTGTGAAAGGATTTGGTGGAATTGGAGGTATC TTGCGGTACCGAGTAGATTTCCAGGGAATGGAATACCAAGGAGGAGATGATGAATTTTTT GACCTTGATGACTACTAGGTAGTCGACATGGGTCCGGCAAAACGTGCCTCACCCTCCAGC ATCCAACCCAAGGAGCATACCCGTGGTGGAATCCAAACAGATCCCTGCCTTACAATTGGA ACACTTCCGGAACTTAATCCATGAGCATTGGATATTGAAAAGAAAACCGAAACAAAACCA GACCCAACCCTACACTTTGGTTTGTCATGGTGTCAGCGCAGCAGCCTACAACTAAGTTCC TAAATGCCACTTTGGACTAATTTAAAAAGAATCCCAGTTTTTACTTTTACTCGATGGTGA AATTGGTTGCTCTTGTATTTTATGAAAAAAAAAAAATGATTTTTTTAACCTTCATACATA GAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAATGAGATCATACT GGTTTGTTTCTTATTTTGATTGGAGAAAAATTAAATTGCTGCATTTCGCAGTGACCCATT TACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATATATGTGGTGAAATGTTGGAAC CATTTCTCTCTCGGTCTCTGTTTAATGTTGAAAGGGTGAGCTAATAGGAGACAGATTCAA CTTCACTCCCTCACACTACCCTCCCCCTCCAGACCGTCACTTTCAAGGATGCAGATTGCA TTGCAAAGACAAACTGACACATGAAGCATTTGGGCCAGTGCTGTTACTTTCAATCTGTTT TGCTGGCGCATTCGCGCCCGGGGTTTGGGAGCCCTTAACATCAATTGCTTTGACAAGGGT TCGCATAGTCTTGCCTACTAAAAACAGTTTGGGATGGATATGATGGGGCTTCTGTGCTAT TGCTGGGATTGGGAGAAATAAAACATGCAATTTAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 85-573, - strand, RNAz p=0.957833 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 85-573, - strand, RNAz p=0.957833 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 45-213, gnl|bosTau2|chr7 (34968580-34968412) | |
| 45-213, gnl|canFam2|chr16 (16107738-16107893) | |
| 45-213, gnl|canFam2|chr16 (16107741-16107893) | |
| 45-213, gnl|canFam2|chr16 (16107736-16107891) | |
| 45-213, gnl|canFam2|chr16 (16107877-16107768) | |
| 45-213, gnl|danRer3|chr10 (14762310-14762456) | |
| 45-213, gnl|danRer3|chr10 (14762312-14762456) | |
| 45-213, gnl|danRer3|chr10 (14762312-14762456) | |
| 45-213, gnl|dasNov1|scaffold_14869 (11281-11127) | |
| 45-213, gnl|dasNov1|scaffold_14869 (11278-11127) | |
| 45-213, gnl|dasNov1|scaffold_14869 (11283-11129) | |
| 45-213, gnl|dasNov1|scaffold_14869 (11137-11248) | |
| 45-213, gnl|echTel1|scaffold_232933 (6007-6162) | |
| 45-213, gnl|echTel1|scaffold_232933 (6010-6162) | |
| 45-213, gnl|echTel1|scaffold_232933 (6152-6041) | |
| 45-213, gnl|echTel1|scaffold_51284 (944-1099) | |
| 45-213, gnl|galGal2|chr13 (6733930-6733777) | |
| 45-213, gnl|galGal2|chr13 (6733927-6733776) | |
| 45-213, gnl|galGal2|chr13 (6733932-6733777) | |
| 45-213, gnl|hg17|chr4 (137283588-137283703) | |
| 45-213, gnl|Hg17|chr5 (137874790-137874622) | |
| 45-213, gnl|hg17|chr6 (30108316-30108468) | |
| 45-213, gnl|hg17|chr7 (150637754-150637909) | |
| 45-213, gnl|hg17|chrX (64797925-64798078) | |
| 45-213, gnl|loxAfr1|scaffold_6116 (52354-52224) | |
| 45-213, gnl|loxAfr1|scaffold_6116 (52351-52224) | |
| 45-213, gnl|loxAfr1|scaffold_6116 (52356-52224) | |
| 45-213, gnl|loxAfr1|scaffold_6116 (52225-52320) | |
| 45-213, gnl|mm7|chr18 (35284299-35284144) | |
| 45-213, gnl|mm7|chr18 (35284296-35284146) | |
| 45-213, gnl|mm7|chr18 (35284298-35284146) | |
| 45-213, gnl|mm7|chr18 (35284154-35284269) | |
| 45-213, gnl|Mm7|chr18 (35284300-35284141) | |
| 45-213, gnl|monDom2|scaffold_6 (70896476-70896629) | |
| 45-213, gnl|monDom2|scaffold_6 (70896479-70896631) | |
| 45-213, gnl|monDom2|scaffold_6 (70896474-70896629) | |
| 45-213, gnl|monDom2|scaffold_6 (70896621-70896511) | |
| 45-213, gnl|oryCun1|scaffold_178125 (105710-105863) | |
| 45-213, gnl|oryCun1|scaffold_178125 (105713-105863) | |
| 45-213, gnl|oryCun1|scaffold_178125 (105711-105863) | |
| 45-213, gnl|oryCun1|scaffold_178125 (105855-105744) | |
| 45-213, gnl|panTro1|chr3 (154336742-154336857) | |
| 45-213, gnl|panTro1|chr5 (30595274-30595426) | |
| 45-213, gnl|panTro1|chr6_random (16283870-16283715) | |
| 45-213, gnl|panTro1|chrX (66583245-66583398) | |
| 45-213, gnl|rheMac2|chr3 (188453682-188453837) | |
| 45-213, gnl|rheMac2|chr4 (29618846-29618998) | |
| 45-213, gnl|rheMac2|chr5 (128374053-128374168) | |
| 45-213, gnl|rheMac2|chrX (64368665-64368818) | |
| 45-213, gnl|rn3|chr18 (27416884-27416734) | |
| 45-213, gnl|rn3|chr18 (27416886-27416734) | |
| 45-213, gnl|rn3|chrX (85192812-85192656) | |
| 45-213, gnl|rn3|chrX (85192666-85192782) | |
| 45-213, gnl|tetNig1|chr1 (146747-146594) | |
| 45-213, gnl|tetNig1|chr1 (146745-146595) | |
| 45-213, gnl|tetNig1|chr1 (146745-146595) | |
| 45-213, gnl|xenTro1|scaffold_635 (45990-46145) | |
| 45-213, gnl|xenTro1|scaffold_635 (45993-46145) | |
| 45-213, gnl|xenTro1|scaffold_635 (45988-46143) | |
| 414-1325, gnl|bosTau2|chr7 (34966974-34966064) | |
| 414-1325, gnl|Hg17|chr5 (137871977-137871065) | |
| 414-1325, gnl|Mm7|chr18 (35281173-35280275) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-213, gnl|bosTau2|chr7 (34968580-34968412) | |
| 45-213, gnl|canFam2|chr16 (16107738-16107893) | |
| 45-213, gnl|canFam2|chr16 (16107741-16107893) | |
| 45-213, gnl|canFam2|chr16 (16107736-16107891) | |
| 45-213, gnl|canFam2|chr16 (16107877-16107768) | |
| 45-213, gnl|danRer3|chr10 (14762310-14762456) | |
| 45-213, gnl|danRer3|chr10 (14762312-14762456) | |
| 45-213, gnl|danRer3|chr10 (14762312-14762456) | |
| 45-213, gnl|dasNov1|scaffold_14869 (11281-11127) | |
| 45-213, gnl|dasNov1|scaffold_14869 (11278-11127) | |
| 45-213, gnl|dasNov1|scaffold_14869 (11283-11129) | |
| 45-213, gnl|dasNov1|scaffold_14869 (11137-11248) | |
| 45-213, gnl|echTel1|scaffold_232933 (6007-6162) | |
| 45-213, gnl|echTel1|scaffold_232933 (6010-6162) | |
| 45-213, gnl|echTel1|scaffold_232933 (6152-6041) | |
| 45-213, gnl|echTel1|scaffold_51284 (944-1099) | |
| 45-213, gnl|galGal2|chr13 (6733930-6733777) | |
| 45-213, gnl|galGal2|chr13 (6733927-6733776) | |
| 45-213, gnl|galGal2|chr13 (6733932-6733777) | |
| 45-213, gnl|hg17|chr4 (137283588-137283703) | |
| 45-213, gnl|Hg17|chr5 (137874790-137874622) | |
| 45-213, gnl|hg17|chr6 (30108316-30108468) | |
| 45-213, gnl|hg17|chr7 (150637754-150637909) | |
| 45-213, gnl|hg17|chrX (64797925-64798078) | |
| 45-213, gnl|loxAfr1|scaffold_6116 (52354-52224) | |
| 45-213, gnl|loxAfr1|scaffold_6116 (52351-52224) | |
| 45-213, gnl|loxAfr1|scaffold_6116 (52356-52224) | |
| 45-213, gnl|loxAfr1|scaffold_6116 (52225-52320) | |
| 45-213, gnl|mm7|chr18 (35284299-35284144) | |
| 45-213, gnl|mm7|chr18 (35284296-35284146) | |
| 45-213, gnl|mm7|chr18 (35284298-35284146) | |
| 45-213, gnl|mm7|chr18 (35284154-35284269) | |
| 45-213, gnl|Mm7|chr18 (35284300-35284141) | |
| 45-213, gnl|monDom2|scaffold_6 (70896476-70896629) | |
| 45-213, gnl|monDom2|scaffold_6 (70896479-70896631) | |
| 45-213, gnl|monDom2|scaffold_6 (70896474-70896629) | |
| 45-213, gnl|monDom2|scaffold_6 (70896621-70896511) | |
| 45-213, gnl|oryCun1|scaffold_178125 (105710-105863) | |
| 45-213, gnl|oryCun1|scaffold_178125 (105713-105863) | |
| 45-213, gnl|oryCun1|scaffold_178125 (105711-105863) | |
| 45-213, gnl|oryCun1|scaffold_178125 (105855-105744) | |
| 45-213, gnl|panTro1|chr3 (154336742-154336857) | |
| 45-213, gnl|panTro1|chr5 (30595274-30595426) | |
| 45-213, gnl|panTro1|chr6_random (16283870-16283715) | |
| 45-213, gnl|panTro1|chrX (66583245-66583398) | |
| 45-213, gnl|rheMac2|chr3 (188453682-188453837) | |
| 45-213, gnl|rheMac2|chr4 (29618846-29618998) | |
| 45-213, gnl|rheMac2|chr5 (128374053-128374168) | |
| 45-213, gnl|rheMac2|chrX (64368665-64368818) | |
| 45-213, gnl|rn3|chr18 (27416884-27416734) | |
| 45-213, gnl|rn3|chr18 (27416886-27416734) | |
| 45-213, gnl|rn3|chrX (85192812-85192656) | |
| 45-213, gnl|rn3|chrX (85192666-85192782) | |
| 45-213, gnl|tetNig1|chr1 (146747-146594) | |
| 45-213, gnl|tetNig1|chr1 (146745-146595) | |
| 45-213, gnl|tetNig1|chr1 (146745-146595) | |
| 45-213, gnl|xenTro1|scaffold_635 (45990-46145) | |
| 45-213, gnl|xenTro1|scaffold_635 (45993-46145) | |
| 45-213, gnl|xenTro1|scaffold_635 (45988-46143) | |
| 414-1325, gnl|bosTau2|chr7 (34966974-34966064) | |
| 414-1325, gnl|Hg17|chr5 (137871977-137871065) | |
| 414-1325, gnl|Mm7|chr18 (35281173-35280275) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| ton (0.526501) | |
| mgp (0.461361) | |
| aor (0.390549) | |
| sto (0.359648) | |
| tbr (0.308356) | |
| isp (0.300752) | |
| cte (0.29274) | |
| nca (0.273748) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| mga (0.160205) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.526501) | |
| mgp (0.461361) | |
| aor (0.390549) | |
| sto (0.359648) | |
| tbr (0.308356) | |
| isp (0.300752) | |
| cte (0.29274) | |
| nca (0.273748) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| mga (0.160205) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |