Non-Coding RNA Search

Ss1.1-Lym1-jns113_B12.f.5

Sequence:


               
               CCAATGATGTCACTGCCTACCGCCAGGTTGGCCTGCCTACATCCCGCATCTTCACGGTCA
ACCCCCGGGGAGAACTCAGCCAGGAGCTCCTGAAGAACCACAAGTCCACGTATGAGCGGC
TTAGCGATGTGGTCGAACTCCTCTTCCCGCCTGTAGCCCGTGGCCCCAGCGCAGACCTGG
CCAACCCTGAATACAGCAATTTTTGCTACTGGCGGAAGCCCTTGGCCCCTGTGGACCTCG
ATGCCTTGGCCTGAACCTGCCCTGCCTGCCCTCCCCCTGCCCCCCGCCCCCTGCCGCTAG
CCCAGAACAAACTGCACATCCCAGGGCCTGGCGGTTGGAGGCCAACTCACCAAAGGGGAG
GAGGGGGCTTCAGGCCTAAGTCGTAGCCTCTCTTGTCCCCTGCTTTTGCCAGCTGAGCTG
CGGGGGCTGGGACAGCTTCTCCAGGCCTCAGCCATTAAATGACTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAATGATGTCACTGCCTACCGCCAGGTTGGCCTGCCTACATCCCGCATCTTCACGGTCA
ACCCCCGGGGAGAACTCAGCCAGGAGCTCCTGAAGAACCACAAGTCCACGTATGAGCGGC
TTAGCGATGTGGTCGAACTCCTCTTCCCGCCTGTAGCCCGTGGCCCCAGCGCAGACCTGG
CCAACCCTGAATACAGCAATTTTTGCTACTGGCGGAAGCCCTTGGCCCCTGTGGACCTCG
ATGCCTTGGCCTGAACCTGCCCTGCCTGCCCTCCCCCTGCCCCCCGCCCCCTGCCGCTAG
CCCAGAACAAACTGCACATCCCAGGGCCTGGCGGTTGGAGGCCAACTCACCAAAGGGGAG
GAGGGGGCTTCAGGCCTAAGTCGTAGCCTCTCTTGTCCCCTGCTTTTGCCAGCTGAGCTG
CGGGGGCTGGGACAGCTTCTCCAGGCCTCAGCCATTAAATGACTGTGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               107-452, gnl|bosTau2|chr13 (51563434-51563791)
               

               
               107-452, gnl|Hg17|chr20 (39420773-39421146)
               

               
               107-452, gnl|Mm7|chr2 (160646145-160646628)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-452, gnl|bosTau2|chr13 (51563434-51563791)
               

               
               107-452, gnl|Hg17|chr20 (39420773-39421146)
               

               
               107-452, gnl|Mm7|chr2 (160646145-160646628)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               ute (0.132784)

	107-452, gnl\|bosTau2\|chr13 (51563434-51563791)
	107-452, gnl\|Hg17\|chr20 (39420773-39421146)
	107-452, gnl\|Mm7\|chr2 (160646145-160646628)