Non-Coding RNA Search

Ss1.1-Lym1-jns117_F09.f.5

Sequence:


               
               AACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAACCACTGCGCCACGACGGGAACTC
CTGAAATGTTCTTTCTTACAGATATCCACACTGTGCTTCAACATGGTCTTTACTCAAATA
TCACCTTATCAGTGAGGTCTCCTTGACCATTCAATACAATACCACTCCTCCACTATCTCC
TAATCTCCCTCTCTTGCTTGATTTTTTCCCCCATTGTACTCATCACCAGCTGAAGTACCA
TATGCCCAATTGTTTAATTGTTTATTGATGTATTTTTACCCATTGTACTTATTACCAACT
GACTATCCCCTCTCCCATTAGAATATGAGCTCCAGGATCCAGTGCTTTTTTTCCGTTTTG
TTCACTATCATACAGTTAGAGTCAAGGTCAGCATCTGGTACATGACAAAGCATACAATAC
CTATTTGTGGTGTGAGTAAATTCCTTATAATTTGAAATCAAAGACTTTTTAAAAAGGCAC
ATCTACTCCATCTTCCCAGAAGCAGAAATCCAATTCAATATTACTGAACACCCTGTTAGA
TACCATCCAAGATATACCACTGGTACATGCATTTCAGCTTTGAATGTATTTGCCTAAACT
CTTTAATATAATTTACTTTCACCCATCACATCTTTTAAAGTAGTATATCAGTTGGACTTG
CTTCCCTTTAATTTAATTAACTTTCTAAGCCTATAGAGTAGCATTGTGAAAAGTATACTG
AAAATAGAGCCAAAAACCTGAATTTGTGTTTCATTTCTACCATATGCTAGCTGATTGGTC
TTGAAGAATTTAACTACTCTGTGAATTATATTCTTCTTCTGTGAAATGGTAATATCTTTC
TCTCTCCCCAGGGATATCTTGTTGAGGTTAAAGTTTAACAACATACATGGAAACATAATG
TCATTGGAACATAATAGGTATTTAATAAATGTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAACCACTGCGCCACGACGGGAACTC
CTGAAATGTTCTTTCTTACAGATATCCACACTGTGCTTCAACATGGTCTTTACTCAAATA
TCACCTTATCAGTGAGGTCTCCTTGACCATTCAATACAATACCACTCCTCCACTATCTCC
TAATCTCCCTCTCTTGCTTGATTTTTTCCCCCATTGTACTCATCACCAGCTGAAGTACCA
TATGCCCAATTGTTTAATTGTTTATTGATGTATTTTTACCCATTGTACTTATTACCAACT
GACTATCCCCTCTCCCATTAGAATATGAGCTCCAGGATCCAGTGCTTTTTTTCCGTTTTG
TTCACTATCATACAGTTAGAGTCAAGGTCAGCATCTGGTACATGACAAAGCATACAATAC
CTATTTGTGGTGTGAGTAAATTCCTTATAATTTGAAATCAAAGACTTTTTAAAAAGGCAC
ATCTACTCCATCTTCCCAGAAGCAGAAATCCAATTCAATATTACTGAACACCCTGTTAGA
TACCATCCAAGATATACCACTGGTACATGCATTTCAGCTTTGAATGTATTTGCCTAAACT
CTTTAATATAATTTACTTTCACCCATCACATCTTTTAAAGTAGTATATCAGTTGGACTTG
CTTCCCTTTAATTTAATTAACTTTCTAAGCCTATAGAGTAGCATTGTGAAAAGTATACTG
AAAATAGAGCCAAAAACCTGAATTTGTGTTTCATTTCTACCATATGCTAGCTGATTGGTC
TTGAAGAATTTAACTACTCTGTGAATTATATTCTTCTTCTGTGAAATGGTAATATCTTTC
TCTCTCCCCAGGGATATCTTGTTGAGGTTAAAGTTTAACAACATACATGGAAACATAATG
TCATTGGAACATAATAGGTATTTAATAAATGTTTAT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               73-936, gnl|bosTau2|chr3 (19188750-19187913)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-936, gnl|bosTau2|chr3 (19188750-19187913)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               mgp (0.230681)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)