Ss1.1-Lym1-jns117_G06.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCATGAGGAACAAATGTTTGTGAATCGTGTGGGCCATGATTATCAGTGGATTGGTCTCA ATGACAAGATGTTTGAGCATGACTTCCGTTGGACCGATGGCAGCACACTGCAATATGAGA ACTGGAGGCCCAACCAGCCAGACAGCTTCTTTTCTTCTGGAGAAGACTGCGTTGTGATCA TATGGCATGAGAATGGCCAGTGGAATGATGTTCCCTGCAATTACCATCTCACCTACACCT GCAAGAAAGGAACAGTTGCTTGCGGCCAGCCCCCTGTTGTAGAAAATGCCAAGACCTTTG GAAAGATGAAACCTCGTTATGAAATCAACTCCCTGATTAGATATCACTGCAAAGATGGTT TCATTCAACGCCACCCTCCAACTATCCGTTGCCTAGGAAATGGAAGATGGGCTATGCCCA AAATTACCTGCCTGAACCCATCCGCATACCAAAGGACTTATTCTAAGAAATACTTTAAAA ATTCCTCATCAGCAAAGGACAATTCAATAAACACATCCAAACATGATCACCGTTGGAGTC GGAGGTGGCAAGAGTCAAGGCGCTGATCCCTAAAAATGGCGAACATGTGTTTTCATCATT TCAGCCAAAGTCCTAACTTCCTGTGCCTTTCCTATCACCTCGAGAAGTATTATCAGTTGG TTTGGATTTTTGGATCACCGTCCAGTCACTTTGGGTTGCTGTGCTCCCAAAACATTTTAA GTGAAAGTATTGGCATTCAAAAACAAAGAAAACAAAAATGAAAGCACATGAGGGCAGACA GTAACCATTTCCAGCCTATCTAATGTCTTTAGTTTTCTATTTGCCTCCAGTGCAGACCAT TTTATAATGTATAACCAGCCTCCTGTACTATTTAAAAAGCTCCATTTCAGCACCAATGGC AATGTAAATAAGATGATTTAATGTTGATTTTAATCCTGTATATAAAATAAAAAGTCACAC TGAGTTCCGGCATATTTAATGATGATTATGGAGCCTTAGAGGTCTTTAATCATTGGTTCG GCTGCTTTTTTCGTAGTTTGTTTAGGCTGGAAATGGTTTCATTTGCTCTTTGTCAGCAGG ACTTAGGATGGCTTTTCCTGGACAACTAACAAACACACAGTTTAGTAGGTCTCTGCACCA TCTCCAACATAGGCGCAGTTGGCTTCCACGTGATGCCGAAGCCTGGCTAATGGGATCCCA ATGGAACTAAAGACTGCAATGTGGAACTCTTTTTTGCTGCATTCCTTTTTCTTCACTTAC AAGAAAGGCCTGGATGGAGGACTTTTCTATGACCAGGAGCATTTTTTTAGGGGTCAAAGT GCTAATTATTAACTCAACCAGGTCTCCTTTTTAATGGCTTTCGTAACACTAACTTGCAGG ATTACAGAACAACACGTTTCCAATGGATATAGACCTAGGGCTCGGGAGGGAAGGGGATTG TTAAAACAACAACACACATTCAAAGAAAGAAATTTTGTATATATAACCATTTTAATCTTT TATAAAGTTTTGAATGTTCATGTATGAATGCTGCAGCTGTGAAGCATACATAAATAAATG AAGTAAGCCATACTGATTTAATTTATTGGATGTTATTTTCCCCAAACCTGCAAATTGACC TAGTATGCTAGTTATTTTTCAGTGTTAGCCTTTATACTCCCTCACACAGTTTGGAACCAT ATAATCTAGATACTTTGTCCCTGATTAAACAATGTGGTGGATAGAATACATCAAGTGTTT ATGATAAAAAGAGTGGAAAAGTGTATAGCTTTCAGCAATTGGTGTTTGCCCATTCTAAGC AAGGTGCTTATATACATAAATAGTGTGGGCATTTCTTCCTATTAGGTGGAGTGTATGTTT TGAAATTTCTCCCTATCTCTTCCTACTCTGTTTTTGCCCTTTAATTTGAATAAAGTGACT GCTGAAGATGACTTTGAATCATTATCCACTTAATTTAATGTTTAAAGAAAAGCCTGTAAT GGAAAGAAAGCATTTAGGAGTCTTTCCCTAATTTTCGTTAGAACGATACTAAGAAGAGAA GACAACAAATAAAATGCTGATAGAAAAAGAGCAGACCCAATGTGGATTCTCTTTCATGAA ACTTTTTTGGACTTAGAAGGAACTGCAGTGGCTACAATCATACACAATGTCTTTAGTCAA GTTCCTTTGGTTGTTGAATTAAACGTGATTCACCTTTAGGGGTTCTAGAGCACAGAACAA CTCTGTGTCTACCTGTTAGGTTTTCATTTTTCCTCTTTTTCATTACAATTAACGTAATGC ATTCCTGTATTTATATTATAACATGTATAGTGTAAAATGTGAATGACTGTTTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCATGAGGAACAAATGTTTGTGAATCGTGTGGGCCATGATTATCAGTGGATTGGTCTCA ATGACAAGATGTTTGAGCATGACTTCCGTTGGACCGATGGCAGCACACTGCAATATGAGA ACTGGAGGCCCAACCAGCCAGACAGCTTCTTTTCTTCTGGAGAAGACTGCGTTGTGATCA TATGGCATGAGAATGGCCAGTGGAATGATGTTCCCTGCAATTACCATCTCACCTACACCT GCAAGAAAGGAACAGTTGCTTGCGGCCAGCCCCCTGTTGTAGAAAATGCCAAGACCTTTG GAAAGATGAAACCTCGTTATGAAATCAACTCCCTGATTAGATATCACTGCAAAGATGGTT TCATTCAACGCCACCCTCCAACTATCCGTTGCCTAGGAAATGGAAGATGGGCTATGCCCA AAATTACCTGCCTGAACCCATCCGCATACCAAAGGACTTATTCTAAGAAATACTTTAAAA ATTCCTCATCAGCAAAGGACAATTCAATAAACACATCCAAACATGATCACCGTTGGAGTC GGAGGTGGCAAGAGTCAAGGCGCTGATCCCTAAAAATGGCGAACATGTGTTTTCATCATT TCAGCCAAAGTCCTAACTTCCTGTGCCTTTCCTATCACCTCGAGAAGTATTATCAGTTGG TTTGGATTTTTGGATCACCGTCCAGTCACTTTGGGTTGCTGTGCTCCCAAAACATTTTAA GTGAAAGTATTGGCATTCAAAAACAAAGAAAACAAAAATGAAAGCACATGAGGGCAGACA GTAACCATTTCCAGCCTATCTAATGTCTTTAGTTTTCTATTTGCCTCCAGTGCAGACCAT TTTATAATGTATAACCAGCCTCCTGTACTATTTAAAAAGCTCCATTTCAGCACCAATGGC AATGTAAATAAGATGATTTAATGTTGATTTTAATCCTGTATATAAAATAAAAAGTCACAC TGAGTTCCGGCATATTTAATGATGATTATGGAGCCTTAGAGGTCTTTAATCATTGGTTCG GCTGCTTTTTTCGTAGTTTGTTTAGGCTGGAAATGGTTTCATTTGCTCTTTGTCAGCAGG ACTTAGGATGGCTTTTCCTGGACAACTAACAAACACACAGTTTAGTAGGTCTCTGCACCA TCTCCAACATAGGCGCAGTTGGCTTCCACGTGATGCCGAAGCCTGGCTAATGGGATCCCA ATGGAACTAAAGACTGCAATGTGGAACTCTTTTTTGCTGCATTCCTTTTTCTTCACTTAC AAGAAAGGCCTGGATGGAGGACTTTTCTATGACCAGGAGCATTTTTTTAGGGGTCAAAGT GCTAATTATTAACTCAACCAGGTCTCCTTTTTAATGGCTTTCGTAACACTAACTTGCAGG ATTACAGAACAACACGTTTCCAATGGATATAGACCTAGGGCTCGGGAGGGAAGGGGATTG TTAAAACAACAACACACATTCAAAGAAAGAAATTTTGTATATATAACCATTTTAATCTTT TATAAAGTTTTGAATGTTCATGTATGAATGCTGCAGCTGTGAAGCATACATAAATAAATG AAGTAAGCCATACTGATTTAATTTATTGGATGTTATTTTCCCCAAACCTGCAAATTGACC TAGTATGCTAGTTATTTTTCAGTGTTAGCCTTTATACTCCCTCACACAGTTTGGAACCAT ATAATCTAGATACTTTGTCCCTGATTAAACAATGTGGTGGATAGAATACATCAAGTGTTT ATGATAAAAAGAGTGGAAAAGTGTATAGCTTTCAGCAATTGGTGTTTGCCCATTCTAAGC AAGGTGCTTATATACATAAATAGTGTGGGCATTTCTTCCTATTAGGTGGAGTGTATGTTT TGAAATTTCTCCCTATCTCTTCCTACTCTGTTTTTGCCCTTTAATTTGAATAAAGTGACT GCTGAAGATGACTTTGAATCATTATCCACTTAATTTAATGTTTAAAGAAAAGCCTGTAAT GGAAAGAAAGCATTTAGGAGTCTTTCCCTAATTTTCGTTAGAACGATACTAAGAAGAGAA GACAACAAATAAAATGCTGATAGAAAAAGAGCAGACCCAATGTGGATTCTCTTTCATGAA ACTTTTTTGGACTTAGAAGGAACTGCAGTGGCTACAATCATACACAATGTCTTTAGTCAA GTTCCTTTGGTTGTTGAATTAAACGTGATTCACCTTTAGGGGTTCTAGAGCACAGAACAA CTCTGTGTCTACCTGTTAGGTTTTCATTTTTCCTCTTTTTCATTACAATTAACGTAATGC ATTCCTGTATTTATATTATAACATGTATAGTGTAAAATGTGAATGACTGTTTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 106-255, gnl|bosTau2|chr21 (14838831-14838682) | |
| 106-255, gnl|canFam2|chr3 (54890901-54891086) | |
| 106-255, gnl|danRer3|chr25 (11799927-11799767) | |
| 106-255, gnl|dasNov1|scaffold_90362 (1062-1233) | |
| 106-255, gnl|echTel1|scaffold_274256 (23717-23905) | |
| 106-255, gnl|fr1|chrUn (111147202-111147354) | |
| 106-255, gnl|galGal2|chr10 (13608703-13608540) | |
| 106-255, gnl|hg17|chr15 (87217085-87217274) | |
| 106-255, gnl|Hg17|chr15 (87217111-87217260) | |
| 106-255, gnl|loxAfr1|scaffold_65315 (16560-16750) | |
| 106-255, gnl|mm7|chr7 (74975845-74976034) | |
| 106-255, gnl|Mm7|chr7 (74975871-74976020) | |
| 106-255, gnl|monDom2|scaffold_45 (11637802-11637611) | |
| 106-255, gnl|oryCun1|scaffold_137587 (5141-4952) | |
| 106-255, gnl|panTro1|chr16 (88071810-88071999) | |
| 106-255, gnl|rheMac2|chr7 (68483485-68483674) | |
| 106-255, gnl|rn3|chr1 (134925561-134925751) | |
| 106-255, gnl|tetNig1|chrUn_random (25862106-25861935) | |
| 106-255, gnl|xenTro1|scaffold_130 (1562293-1562125) | |
| 1230-2339, gnl|bosTau2|chr7 (56002132-56001029) | |
| 1230-2339, gnl|Hg17|chr5 (82912670-82913794) | |
| 1230-2339, gnl|Mm7|chr13 (86730954-86729768) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 106-255, gnl|bosTau2|chr21 (14838831-14838682) | |
| 106-255, gnl|canFam2|chr3 (54890901-54891086) | |
| 106-255, gnl|danRer3|chr25 (11799927-11799767) | |
| 106-255, gnl|dasNov1|scaffold_90362 (1062-1233) | |
| 106-255, gnl|echTel1|scaffold_274256 (23717-23905) | |
| 106-255, gnl|fr1|chrUn (111147202-111147354) | |
| 106-255, gnl|galGal2|chr10 (13608703-13608540) | |
| 106-255, gnl|hg17|chr15 (87217085-87217274) | |
| 106-255, gnl|Hg17|chr15 (87217111-87217260) | |
| 106-255, gnl|loxAfr1|scaffold_65315 (16560-16750) | |
| 106-255, gnl|mm7|chr7 (74975845-74976034) | |
| 106-255, gnl|Mm7|chr7 (74975871-74976020) | |
| 106-255, gnl|monDom2|scaffold_45 (11637802-11637611) | |
| 106-255, gnl|oryCun1|scaffold_137587 (5141-4952) | |
| 106-255, gnl|panTro1|chr16 (88071810-88071999) | |
| 106-255, gnl|rheMac2|chr7 (68483485-68483674) | |
| 106-255, gnl|rn3|chr1 (134925561-134925751) | |
| 106-255, gnl|tetNig1|chrUn_random (25862106-25861935) | |
| 106-255, gnl|xenTro1|scaffold_130 (1562293-1562125) | |
| 1230-2339, gnl|bosTau2|chr7 (56002132-56001029) | |
| 1230-2339, gnl|Hg17|chr5 (82912670-82913794) | |
| 1230-2339, gnl|Mm7|chr13 (86730954-86729768) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| gul (0.887942) | |
| eru (0.480192) | |
| cbl (0.344392) | |
| csk (0.281492) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| nms (0.213858) | |
| eje (0.197668) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.887942) | |
| eru (0.480192) | |
| cbl (0.344392) | |
| csk (0.281492) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| nms (0.213858) | |
| eje (0.197668) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| cty (0.10408) |