Non-Coding RNA Search

Ss1.1-Lym1-jns119_G07.f.5

Sequence:


               
               GGTGTTATCATGCGCTACGTAACATTTATTTTGAGGGTGCGGATGTGAGTGCCACAGTGG
AAGGTGCCCCCCCCACCTCTTCGGCAGCCTGAGGGAGGAGCAGGATTGTCCCAGCTGCAA
GCTGGGGATCAGTCCAGACCCCGTATCCATTTGGAGGGTCGCTGCATCAGATGCCACTCT
GTCCCCACAGTACTGAGGGGGTGAGGGCTGAGCGGGGCTGTGGGGCTCATAGAACGGGTA
GCGTCAGCGAGAAGCTCGGGGAATGTGCAAAAATGATCAAATCACGGGCCAGGGTGGCGC
TAGCCCTGCCTGGGAGTGAGGGAGGGGTGTGTGCTGGAGGCTGGAGGGCTGCGTCCGGGC
CGTCTTGGGGGATGGAGTGGGTTTCCCAGGGTGGACAGCGTCGGCAGGGGGCTCACTCCA
CAGGTGAGCCCTGCCTGCTCTGCGTTCCCAAGTTTGTATGAGGCCACCTGGGCCCTTCAC
TCAGCCACGTCGATGGACAGCATGGACTTGATCGCAGGGAATTTGTTGCAGGAGAAGTCA
GCGAGGAGCTGCTTGGTGCCGCTCCGGGTGGGCATGATCTCAAAACGCACTCGGGACCGC
TCCTTGGGGCGCAGGGCTGGCACGTCGATCCTGAGGCTGCCCAGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTTATCATGCGCTACGTAACATTTATTTTGAGGGTGCGGATGTGAGTGCCACAGTGG
AAGGTGCCCCCCCCACCTCTTCGGCAGCCTGAGGGAGGAGCAGGATTGTCCCAGCTGCAA
GCTGGGGATCAGTCCAGACCCCGTATCCATTTGGAGGGTCGCTGCATCAGATGCCACTCT
GTCCCCACAGTACTGAGGGGGTGAGGGCTGAGCGGGGCTGTGGGGCTCATAGAACGGGTA
GCGTCAGCGAGAAGCTCGGGGAATGTGCAAAAATGATCAAATCACGGGCCAGGGTGGCGC
TAGCCCTGCCTGGGAGTGAGGGAGGGGTGTGTGCTGGAGGCTGGAGGGCTGCGTCCGGGC
CGTCTTGGGGGATGGAGTGGGTTTCCCAGGGTGGACAGCGTCGGCAGGGGGCTCACTCCA
CAGGTGAGCCCTGCCTGCTCTGCGTTCCCAAGTTTGTATGAGGCCACCTGGGCCCTTCAC
TCAGCCACGTCGATGGACAGCATGGACTTGATCGCAGGGAATTTGTTGCAGGAGAAGTCA
GCGAGGAGCTGCTTGGTGCCGCTCCGGGTGGGCATGATCTCAAAACGCACTCGGGACCGC
TCCTTGGGGCGCAGGGCTGGCACGTCGATCCTGAGGCTGCCCAGCAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               354-468, + strand, RNAz p=0.996416

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               354-468, + strand, RNAz p=0.996416

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               427-517, + strand, RNAmicro p=0.998998

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               427-517, + strand, RNAmicro p=0.998998

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-629, gnl|bosTau2|chr13 (34009025-34008372)
               

               
               2-629, gnl|Hg17|chr20 (2269724-2269075)
               

               
               2-629, gnl|Mm7|chr2 (129789746-129789101)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-629, gnl|bosTau2|chr13 (34009025-34008372)
               

               
               2-629, gnl|Hg17|chr20 (2269724-2269075)
               

               
               2-629, gnl|Mm7|chr2 (129789746-129789101)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               cag (0.151194)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               cag (0.151194)

	2-629, gnl\|bosTau2\|chr13 (34009025-34008372)
	2-629, gnl\|Hg17\|chr20 (2269724-2269075)
	2-629, gnl\|Mm7\|chr2 (129789746-129789101)