Non-Coding RNA Search

Ss1.1-Lym1-jns121_C07.f.5

Sequence:


               
               AGCAAAAGAAACAAAAGCCAGGAAAACACTCATTTTTTGCCTTGAATATGTAAATGGGGT
TAATTTTGTCCTGTGCCTTATGTGGAAAGGAAGTTCTTTGGTTTTTCCTCTTTCTGTTTT
GGTGGAAGCATGTGCAGGAGACATATCATCGAAACATAAAGCATTAAAATGTTTGTGGTT
TGCTTGGCTGTAATTTTCAAAGTAGTTAATTGAGGACAAAGGGTAATGCAGAAATGATAG
CTTTGGTTTGCTGAGTCTCATTTTCAGTGGCCTTGATATTTAAAACTATTCCTGCCACCA
GTTCTTTTCCTTGGCCACGTCTTCCTTGTGTCTCTTCCTGCATGCTGCTTTATTTGCTTC
TCCCCCACCACTCTGTGGTATGGGTTATTTAAAAATGAAAGAGTCAAACTAGTAGGTTTG
TCAAGTTTAACATAAAGCACTGATTTAAATTGCTAAGTAAACTGAAAGATAAATTCTAAC
TGCCTCCTCTCAAATGTCAGTTAACTATGTCCCCTCCTCATTTTCTCTCTCCCCTAATGC
TTCTGTCCCAGATTCCTTCATATGCTGTTCGACTTCATGTTCCTCTTCTCCTTCCCTTTT
TTGTTTCCTTCCTGTCTCTCCATTGAGTTTATGAAATGGAAGAGTTAATTGCATGCACTA
GTGTTTGGAGGGTGTTGTGGTTTGTCTTTCTAATTAGGTGTATCGCCTATTCACTTTCCT
AGAATAAATCTCTTAACCTAAATTTGAGTAGTCTCCATTTTGGCAACTCCTCTAGCAGTT
TGGTAGCCCGGTAAAGGTTGTTTAAATAAGGTGGGAAGGAGGAGTGAAATTCATTAACAT
GTTTGCCAAATATCTTGAGATTTGGCCTTTGAAGAACACTTTTTCAGTGTTAAGTTGTCT
TTACCTTAAGATTTAGAAGTACTTTAGATTATTATTAATTTTAAGTCCTATCTTCACATC
CCTTTGAAAAACTTGTATTACCATGGATTTGGGAAAAGGACAACAAAGGCTTTTCATGTA
AAGATAAGATACTCTAGCTCTCTCTCATCCTGTCCTTTTTTCACTTCATTTCTCTAGTTT
TGCTTCATTGCTTATCATTAGGATAGGGTAAGTTACGTTTGCTCTGCTGCTAGCATCCTA
AGATGATACCTTTGTTGAAATAATTGTGAATAGCATGATTCATTTCTAGCAGAGGCTGAG
TTTAGGACAGCAGCTTCCATTGAAAAGTCTTTCTGTATCGTGGGTAGCATTTTAATGCCC
TCTGGCTCACAGAAACAACATAGGGACATATCTGCTCTGAACAACCATGAATTTTTCAGA
TAGTGCCCTAAAAACAATTTTATATGCCTCACTGGTTATTGTTGTTGTTAGGTTTCCCCC
TCACTTGACTTTATCATTGTTTACTACTAGTAAAAGCAGCATTGCCAAATAATCCTTAAT
TTTCCACTAAAAATAACAAATGATGTTAAGCTTCTCAGCAAAACGTTTTAGGTTAAATCT
GCTGTTGGTTAGATCAGTTTTAATGTGTTGCTTTCCTGTATCTGGAATGTGGCAGTAGCT
TTTTTATTTTTAACCCTCCTTAATCCTTATTCAATTCAGTGACTTAAGGTTTGAGAGCTA
AACACTGGGATTTTTGGGTAACAGACTGACAGTTTTGTTGTTTGCGTAATTATAATCGGC
ATTGTACATAGAAAGGATATGGCTACCTTTTGTTAAATCTGCACTTTCTAAATATCAAAA
AAAGGGAAATGGAGTAAAAATCAATTTTTGTATAACCTGTTTGAAACATGAATTTTATTT
GCTTAATATTAGGGCTTTGCCCCTTTTTCTGTAAGTCTCTTGGGATCCTGTGTAGAAGCT
GTTCTCATTAAACACCAAACAGTTAAGTCCATTCTCTGGTACTAGCTACAAATTCGGTTT
CATATTCTACTTAACAATTTAAATAAACTGAAATATTTCTAGATGGTCTACTTCTGTTCA
TATAAAAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAAAAGAAACAAAAGCCAGGAAAACACTCATTTTTTGCCTTGAATATGTAAATGGGGT
TAATTTTGTCCTGTGCCTTATGTGGAAAGGAAGTTCTTTGGTTTTTCCTCTTTCTGTTTT
GGTGGAAGCATGTGCAGGAGACATATCATCGAAACATAAAGCATTAAAATGTTTGTGGTT
TGCTTGGCTGTAATTTTCAAAGTAGTTAATTGAGGACAAAGGGTAATGCAGAAATGATAG
CTTTGGTTTGCTGAGTCTCATTTTCAGTGGCCTTGATATTTAAAACTATTCCTGCCACCA
GTTCTTTTCCTTGGCCACGTCTTCCTTGTGTCTCTTCCTGCATGCTGCTTTATTTGCTTC
TCCCCCACCACTCTGTGGTATGGGTTATTTAAAAATGAAAGAGTCAAACTAGTAGGTTTG
TCAAGTTTAACATAAAGCACTGATTTAAATTGCTAAGTAAACTGAAAGATAAATTCTAAC
TGCCTCCTCTCAAATGTCAGTTAACTATGTCCCCTCCTCATTTTCTCTCTCCCCTAATGC
TTCTGTCCCAGATTCCTTCATATGCTGTTCGACTTCATGTTCCTCTTCTCCTTCCCTTTT
TTGTTTCCTTCCTGTCTCTCCATTGAGTTTATGAAATGGAAGAGTTAATTGCATGCACTA
GTGTTTGGAGGGTGTTGTGGTTTGTCTTTCTAATTAGGTGTATCGCCTATTCACTTTCCT
AGAATAAATCTCTTAACCTAAATTTGAGTAGTCTCCATTTTGGCAACTCCTCTAGCAGTT
TGGTAGCCCGGTAAAGGTTGTTTAAATAAGGTGGGAAGGAGGAGTGAAATTCATTAACAT
GTTTGCCAAATATCTTGAGATTTGGCCTTTGAAGAACACTTTTTCAGTGTTAAGTTGTCT
TTACCTTAAGATTTAGAAGTACTTTAGATTATTATTAATTTTAAGTCCTATCTTCACATC
CCTTTGAAAAACTTGTATTACCATGGATTTGGGAAAAGGACAACAAAGGCTTTTCATGTA
AAGATAAGATACTCTAGCTCTCTCTCATCCTGTCCTTTTTTCACTTCATTTCTCTAGTTT
TGCTTCATTGCTTATCATTAGGATAGGGTAAGTTACGTTTGCTCTGCTGCTAGCATCCTA
AGATGATACCTTTGTTGAAATAATTGTGAATAGCATGATTCATTTCTAGCAGAGGCTGAG
TTTAGGACAGCAGCTTCCATTGAAAAGTCTTTCTGTATCGTGGGTAGCATTTTAATGCCC
TCTGGCTCACAGAAACAACATAGGGACATATCTGCTCTGAACAACCATGAATTTTTCAGA
TAGTGCCCTAAAAACAATTTTATATGCCTCACTGGTTATTGTTGTTGTTAGGTTTCCCCC
TCACTTGACTTTATCATTGTTTACTACTAGTAAAAGCAGCATTGCCAAATAATCCTTAAT
TTTCCACTAAAAATAACAAATGATGTTAAGCTTCTCAGCAAAACGTTTTAGGTTAAATCT
GCTGTTGGTTAGATCAGTTTTAATGTGTTGCTTTCCTGTATCTGGAATGTGGCAGTAGCT
TTTTTATTTTTAACCCTCCTTAATCCTTATTCAATTCAGTGACTTAAGGTTTGAGAGCTA
AACACTGGGATTTTTGGGTAACAGACTGACAGTTTTGTTGTTTGCGTAATTATAATCGGC
ATTGTACATAGAAAGGATATGGCTACCTTTTGTTAAATCTGCACTTTCTAAATATCAAAA
AAAGGGAAATGGAGTAAAAATCAATTTTTGTATAACCTGTTTGAAACATGAATTTTATTT
GCTTAATATTAGGGCTTTGCCCCTTTTTCTGTAAGTCTCTTGGGATCCTGTGTAGAAGCT
GTTCTCATTAAACACCAAACAGTTAAGTCCATTCTCTGGTACTAGCTACAAATTCGGTTT
CATATTCTACTTAACAATTTAAATAAACTGAAATATTTCTAGATGGTCTACTTCTGTTCA
TATAAAAACAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1078-1237, - strand, RNAz p=0.980196

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1078-1237, - strand, RNAz p=0.980196

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1163-1298, - strand, RNAmicro p=0.957109

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1163-1298, - strand, RNAmicro p=0.957109

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1992, gnl|bosTau2|chr11 (54654037-54656040)
               

               
               1-1992, gnl|Hg17|chr2 (26269974-26271962)
               

               
               1-1992, gnl|Mm7|chr12 (3167829-3165912)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1992, gnl|bosTau2|chr11 (54654037-54656040)
               

               
               1-1992, gnl|Hg17|chr2 (26269974-26271962)
               

               
               1-1992, gnl|Mm7|chr12 (3167829-3165912)

Expressed library(ies): 37 entry(ies)

More info

Expressed library(ies): 37 entry(ies)

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               sin (1.22463)
               

               
               liv (1.02399)
               

               
               vin (0.997672)
               

               
               ldo (0.776021)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               ebs (0.354904)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (1.22463)
               

               
               liv (1.02399)
               

               
               vin (0.997672)
               

               
               ldo (0.776021)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               ebs (0.354904)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

	1-1992, gnl\|bosTau2\|chr11 (54654037-54656040)
	1-1992, gnl\|Hg17\|chr2 (26269974-26271962)
	1-1992, gnl\|Mm7\|chr12 (3167829-3165912)

	sin (1.22463)
	liv (1.02399)
	vin (0.997672)
	ldo (0.776021)
	pro (0.512033)
	mgp (0.461361)
	bfe (0.449573)
	lin (0.436808)
	spl (0.429553)
	mas (0.42061)
	amn (0.417711)
	hea (0.408998)
	fcc (0.39557)
	ret (0.3862)
	sug (0.381874)
	ebs (0.354904)
	spc (0.340097)
	fhi (0.339155)
	tbr (0.308356)
	sme (0.305437)
	isp (0.300752)
	fce (0.271592)
	ste (0.270416)
	ecc (0.23007)
	nms (0.213858)
	cty (0.20816)
	col (0.195008)
	mgm (0.180343)
	eye (0.170503)
	nje (0.16592)
	fco (0.157208)
	fat (0.147427)
	pla (0.133672)
	kid (0.129735)
	thg (0.126791)
	bla (0.124347)
	clu (0.119646)