Non-Coding RNA Search

Ss1.1-Lym1-jns122_H04.f.5

Sequence:


               
               TACTGTGACCTGTTAAACGTGGACATCTCCTGCGACGGCTGCGATGAGATCGCCCCCTGG
CATCGCTACCGGTGTCTGCAGTGCAGCGACATGGACCTCTGCAAGACTTGCTTCCTAGGT
GGTGTGAAGCCTGAGGGCCATGGAGATGACCACGAAATGGTCAACATGGAATTTACGTGT
GACCACTGTCAGGGTTTGATCATAGGTCGGAGGATGAATTGCAACGTGTGTGATGACTTT
GACCTTTGCTATGGATGCTATGCGGCCAAGAAATATTCCTATGGCCACTTGCCTACGCAC
AGCATCACTGCCCATCCGATGGTGACCATCCGGATCAGCGACCGCCAGCGGCTCATCCAG
CCCTACATCCACAACTACTCCTGGCTGCTCTTCGCCGCCCTGGCTCTCTACAGCGCCCAC
GTGGCCAGCGCAGAGGATGTGGACGGCGAGAAGCTGGCTCCCCAGGCCCGCAGGAGTGCC
GCCGCCCTGCGGAGCCGGTGCATGCAGCTCGTAGGGGACTGTCTGATGAAGGCGCACCAG
GGTAAAGGTCTTAAGGCGCTAGCTCTTCTTGGTATTTTGCCTGATAGCGACTCTCCTCCA
GAAAATCAGGCCCCGCCAGTCACCGCGCCCACCGGAACAGCAGAGGAGCAGCGGGAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGTGACCTGTTAAACGTGGACATCTCCTGCGACGGCTGCGATGAGATCGCCCCCTGG
CATCGCTACCGGTGTCTGCAGTGCAGCGACATGGACCTCTGCAAGACTTGCTTCCTAGGT
GGTGTGAAGCCTGAGGGCCATGGAGATGACCACGAAATGGTCAACATGGAATTTACGTGT
GACCACTGTCAGGGTTTGATCATAGGTCGGAGGATGAATTGCAACGTGTGTGATGACTTT
GACCTTTGCTATGGATGCTATGCGGCCAAGAAATATTCCTATGGCCACTTGCCTACGCAC
AGCATCACTGCCCATCCGATGGTGACCATCCGGATCAGCGACCGCCAGCGGCTCATCCAG
CCCTACATCCACAACTACTCCTGGCTGCTCTTCGCCGCCCTGGCTCTCTACAGCGCCCAC
GTGGCCAGCGCAGAGGATGTGGACGGCGAGAAGCTGGCTCCCCAGGCCCGCAGGAGTGCC
GCCGCCCTGCGGAGCCGGTGCATGCAGCTCGTAGGGGACTGTCTGATGAAGGCGCACCAG
GGTAAAGGTCTTAAGGCGCTAGCTCTTCTTGGTATTTTGCCTGATAGCGACTCTCCTCCA
GAAAATCAGGCCCCGCCAGTCACCGCGCCCACCGGAACAGCAGAGGAGCAGCGGGAGAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               114-232, - strand, RNAz p=0.546698
               

               
               175-284, + strand, RNAz p=0.755835

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-232, - strand, RNAz p=0.546698
               

               
               175-284, + strand, RNAz p=0.755835

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               114-284, gnl|bosTau2|chr19 (19214354-19214184)
               

               
               114-284, gnl|canFam2|chr5 (33156823-33157012)
               

               
               114-284, gnl|danRer3|chr5 (26021468-26021659)
               

               
               114-284, gnl|echTel1|scaffold_318100 (47038-47226)
               

               
               114-284, gnl|fr1|chrUn (54206220-54206039)
               

               
               114-284, gnl|galGal2|chr19 (2997752-2997573)
               

               
               114-284, gnl|hg17|chr17 (3902012-3902202)
               

               
               114-284, gnl|Hg17|chr17 (3902185-3902014)
               

               
               114-284, gnl|mm7|chr11 (72969886-72969696)
               

               
               114-284, gnl|Mm7|chr11 (72969712-72969882)
               

               
               114-284, gnl|monDom2|scaffold_310 (117090-116904)
               

               
               114-284, gnl|oryCun1|scaffold_213267 (96407-96597)
               

               
               114-284, gnl|panTro1|chr19_random (19375863-19375673)
               

               
               114-284, gnl|rheMac2|chr16 (3778965-3779155)
               

               
               114-284, gnl|rn3|chr10 (59791354-59791166)
               

               
               114-284, gnl|tetNig1|chr7 (2042336-2042517)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-284, gnl|bosTau2|chr19 (19214354-19214184)
               

               
               114-284, gnl|canFam2|chr5 (33156823-33157012)
               

               
               114-284, gnl|danRer3|chr5 (26021468-26021659)
               

               
               114-284, gnl|echTel1|scaffold_318100 (47038-47226)
               

               
               114-284, gnl|fr1|chrUn (54206220-54206039)
               

               
               114-284, gnl|galGal2|chr19 (2997752-2997573)
               

               
               114-284, gnl|hg17|chr17 (3902012-3902202)
               

               
               114-284, gnl|Hg17|chr17 (3902185-3902014)
               

               
               114-284, gnl|mm7|chr11 (72969886-72969696)
               

               
               114-284, gnl|Mm7|chr11 (72969712-72969882)
               

               
               114-284, gnl|monDom2|scaffold_310 (117090-116904)
               

               
               114-284, gnl|oryCun1|scaffold_213267 (96407-96597)
               

               
               114-284, gnl|panTro1|chr19_random (19375863-19375673)
               

               
               114-284, gnl|rheMac2|chr16 (3778965-3779155)
               

               
               114-284, gnl|rn3|chr10 (59791354-59791166)
               

               
               114-284, gnl|tetNig1|chr7 (2042336-2042517)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	114-232, - strand, RNAz p=0.546698
	175-284, + strand, RNAz p=0.755835

	114-284, gnl\|bosTau2\|chr19 (19214354-19214184)
	114-284, gnl\|canFam2\|chr5 (33156823-33157012)
	114-284, gnl\|danRer3\|chr5 (26021468-26021659)
	114-284, gnl\|echTel1\|scaffold_318100 (47038-47226)
	114-284, gnl\|fr1\|chrUn (54206220-54206039)
	114-284, gnl\|galGal2\|chr19 (2997752-2997573)
	114-284, gnl\|hg17\|chr17 (3902012-3902202)
	114-284, gnl\|Hg17\|chr17 (3902185-3902014)
	114-284, gnl\|mm7\|chr11 (72969886-72969696)
	114-284, gnl\|Mm7\|chr11 (72969712-72969882)
	114-284, gnl\|monDom2\|scaffold_310 (117090-116904)
	114-284, gnl\|oryCun1\|scaffold_213267 (96407-96597)
	114-284, gnl\|panTro1\|chr19_random (19375863-19375673)
	114-284, gnl\|rheMac2\|chr16 (3778965-3779155)
	114-284, gnl\|rn3\|chr10 (59791354-59791166)
	114-284, gnl\|tetNig1\|chr7 (2042336-2042517)