Non-Coding RNA Search

Ss1.1-Lym1-jns123_F07.f.5

Sequence:


               
               GGTTAGTGTCAGTATAAGTTTTAAATGAATATTTACTGTCTTGTTTTTGTTTTAAAGTAG
TTGAAATTTTTTCCTAGCCTTTTTCCCATGTTTTATGAATTCATTTTGTCAGGGTTTCTA
ATGTCACAGAAATGCTACACAAGATATCACTATTGGTAGAGAAAATAGTAAAAGTGTTGC
TATAATTGCCCTCACAATTTTGAATTTAAAACTTTACCAACTGTTTTAAAGATGTCTTAG
TATTAAGTTTCCATACAATAATCTACTACTTCTGGATTCAAGAAATTTGAAGAAATTGAA
TCTGCATATTTTTCCCATAGAGTGTGAGCATTTAAAAAAATACCTTTGTTCTTTAAAAAA
TAAGTACTGAAATTTTATTAATTCTATGTATAACAGCAACAGAGAATAACTAATGGCATA
TACTGCATGAAAATCTTGAACTATATTTTTTTTAAATACTTACTAAGCAGGTATTTGTAT
ATATAATCTACTCTGTTGATCTGTTCTAATCCATCCTTGTGCATTTTCTTAATTTCCATG
GCCTTAATTTTTAAATTTGCTTGTAATCTCAGTAACTAAATTGTAGTCATGTGGTAATTT
TCTAAAGGGAATCTGTGATAGGTGAACTTGATTTAATAAAAATTAAATATAAACATTTGT
ATTTATTTCAGAAATATCAGAAGTAGGCTAATGAGTCATTATAAAACTTACCATGTGATT
CTATTAAGTAACCAATCAATAGAACGTAGATTAGTTTATATAAATAGATGAGTAGGTACG
TATGTAGGTAGATAATTAAATAGCCTTTGGATGATTGAGGCATGCTCATATTATGAAAAA
AAAATTATTGCTAATAAAGACAAATACTACATGTTCATTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTAGTGTCAGTATAAGTTTTAAATGAATATTTACTGTCTTGTTTTTGTTTTAAAGTAG
TTGAAATTTTTTCCTAGCCTTTTTCCCATGTTTTATGAATTCATTTTGTCAGGGTTTCTA
ATGTCACAGAAATGCTACACAAGATATCACTATTGGTAGAGAAAATAGTAAAAGTGTTGC
TATAATTGCCCTCACAATTTTGAATTTAAAACTTTACCAACTGTTTTAAAGATGTCTTAG
TATTAAGTTTCCATACAATAATCTACTACTTCTGGATTCAAGAAATTTGAAGAAATTGAA
TCTGCATATTTTTCCCATAGAGTGTGAGCATTTAAAAAAATACCTTTGTTCTTTAAAAAA
TAAGTACTGAAATTTTATTAATTCTATGTATAACAGCAACAGAGAATAACTAATGGCATA
TACTGCATGAAAATCTTGAACTATATTTTTTTTAAATACTTACTAAGCAGGTATTTGTAT
ATATAATCTACTCTGTTGATCTGTTCTAATCCATCCTTGTGCATTTTCTTAATTTCCATG
GCCTTAATTTTTAAATTTGCTTGTAATCTCAGTAACTAAATTGTAGTCATGTGGTAATTT
TCTAAAGGGAATCTGTGATAGGTGAACTTGATTTAATAAAAATTAAATATAAACATTTGT
ATTTATTTCAGAAATATCAGAAGTAGGCTAATGAGTCATTATAAAACTTACCATGTGATT
CTATTAAGTAACCAATCAATAGAACGTAGATTAGTTTATATAAATAGATGAGTAGGTACG
TATGTAGGTAGATAATTAAATAGCCTTTGGATGATTGAGGCATGCTCATATTATGAAAAA
AAAATTATTGCTAATAAAGACAAATACTACATGTTCATTAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               498-884, gnl|bosTau2|chr3 (50547244-50547643)
               

               
               498-884, gnl|Mm7|chr3 (157974821-157975239)
               


               
               502-874, gnl|bosTau2|chr27 (25101785-25102186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               498-884, gnl|bosTau2|chr3 (50547244-50547643)
               

               
               498-884, gnl|Mm7|chr3 (157974821-157975239)
               


               
               502-874, gnl|bosTau2|chr27 (25101785-25102186)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (0.314416)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               kid (0.129735)

	498-884, gnl\|bosTau2\|chr3 (50547244-50547643)
	498-884, gnl\|Mm7\|chr3 (157974821-157975239)

	502-874, gnl\|bosTau2\|chr27 (25101785-25102186)