Non-Coding RNA Search

Ss1.1-Lym1-jns15_C03.f.5

Sequence:


               
               GATCTTCATGGTTGGCAAGTCAGTCTACAACTGTTATCATTTCATTTAACTCGACTGACT
TAGAAGTCCTTACCCAGTTATTTTGTTTCATCAGACCTAAAGAATGGAGAAAGTGAAGAT
ACAAGTGTTTGTTCTTACTTACACTATTAGTTTTCTTCTCCTTGTAACTCCATTCTTTAC
CTTCTTCTCAACTTATAACTCCCTTTCCCTTATCATGCTAACAGTAGCGCCTACACTCAT
CCCGTTCTGCTGTCACGGCTAGTGGTTGGTGCTATACAGGGAGCCCACTGTACAGCGGCA
TTCGTAACCTTTGCCTGCCTAGCGCACCCAGCCCACCTTTCAGCTAATTAGATCACTTTT
TGCAGCTTTGCAGTTTCTAGAGTAACCAATATCAGCTTGGCAGCTAAAATCAAGATGTTG
ACAAATATCTATTCCTTTTGCCTGTAAGATTGGTTACCTGGTTCAGTTGCTTTTCATTTT
TACTGTCTTCCTTTTCACAGTTCATACCTCAAAAGAACAGTCAATACATTTGCTTTTCTT
TCTGCAGAACCCCTTATCTCAACCTTCCATATATGGACTGTCTAATTTTCTTTCTGTGCT
TTCTTCTCATATGCAAGCAGACTGTATGCCAAGAGTCCCTTGCCCCTAGCAATTTCTGTT
AAAATTTTCAAGTAGCCTGTTTCCTTTTACAATTAAATTATTGTATTTATTAATTTGATT
GAATCCAGTAAGTCCTTTCTCTAGTCCTGGCCATACTGTCAATAAAATGATGAAAGTAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCTTCATGGTTGGCAAGTCAGTCTACAACTGTTATCATTTCATTTAACTCGACTGACT
TAGAAGTCCTTACCCAGTTATTTTGTTTCATCAGACCTAAAGAATGGAGAAAGTGAAGAT
ACAAGTGTTTGTTCTTACTTACACTATTAGTTTTCTTCTCCTTGTAACTCCATTCTTTAC
CTTCTTCTCAACTTATAACTCCCTTTCCCTTATCATGCTAACAGTAGCGCCTACACTCAT
CCCGTTCTGCTGTCACGGCTAGTGGTTGGTGCTATACAGGGAGCCCACTGTACAGCGGCA
TTCGTAACCTTTGCCTGCCTAGCGCACCCAGCCCACCTTTCAGCTAATTAGATCACTTTT
TGCAGCTTTGCAGTTTCTAGAGTAACCAATATCAGCTTGGCAGCTAAAATCAAGATGTTG
ACAAATATCTATTCCTTTTGCCTGTAAGATTGGTTACCTGGTTCAGTTGCTTTTCATTTT
TACTGTCTTCCTTTTCACAGTTCATACCTCAAAAGAACAGTCAATACATTTGCTTTTCTT
TCTGCAGAACCCCTTATCTCAACCTTCCATATATGGACTGTCTAATTTTCTTTCTGTGCT
TTCTTCTCATATGCAAGCAGACTGTATGCCAAGAGTCCCTTGCCCCTAGCAATTTCTGTT
AAAATTTTCAAGTAGCCTGTTTCCTTTTACAATTAAATTATTGTATTTATTAATTTGATT
GAATCCAGTAAGTCCTTTCTCTAGTCCTGGCCATACTGTCAATAAAATGATGAAAGTAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               553-710, - strand, RNAz p=0.615967

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               553-710, - strand, RNAz p=0.615967

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-782, gnl|bosTau2|chr28 (23225385-23224640)
               

               
               1-782, gnl|Hg17|chr10 (75552340-75551527)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-782, gnl|bosTau2|chr28 (23225385-23224640)
               

               
               1-782, gnl|Hg17|chr10 (75552340-75551527)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               lyg (0.399308)
               

               
               sug (0.254582)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.399308)
               

               
               sug (0.254582)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	1-782, gnl\|bosTau2\|chr28 (23225385-23224640)
	1-782, gnl\|Hg17\|chr10 (75552340-75551527)

	lyg (0.399308)
	sug (0.254582)
	sin (0.174948)
	eye (0.170503)
	nco (0.161734)
	mga (0.160205)
	isp (0.150376)
	kid (0.129735)
	thg (0.126791)
	ese (0.126502)
	eru (0.120048)
	ebs (0.118301)