Non-Coding RNA Search

Ss1.1-Lym1-jns16bD01.f.5

Sequence:


               
               GATATCAGGAGACCGTGAAAAGCCACTTGGCTGCAGACATCCAGGCAGCAATTTACTTAC
CTTCCTCGCTGGCTCTGAGAACAACTCTGGCTCAGTCTTTCCACCATGAGCCTCAGACTT
GGCGCCATCTCCTCCTGTACCACTTCCAGCCCATTTCCTGTCCTCCAGGTATTGCTGCCA
TTGTCACTGCTCCTGACCACGCTGGTTCCCGCCACCATGGGAGCAGCTAAAATTGAGGGA
AGAATGGCGCACGTTGAACTTCGCTGCCTCTGCTTGAATACCGTCTCTGGCATTCATCCC
AGTAACATCCAAAGTTTGGAGGTGATCAGGGCAGGAGCTCACTGTGCCAAAGTCGAAGTG
ATAGCCACGCTGAAGAATGACAAGAAAATCTGCCTGGATCCAGAAGCACCCAGAATCAAG
AAAATAGTCCAAAAAATAATGGAAGATGGTGGGTCAGCTGCTTAATCCTTCTCCCTTTCT
GCCAAAGTGGTTTAACTCCCAGGAAGGTTAGGAATTTGAAGTCTTGGCTGTCTAGAGTTC
TTATTTATCCAGGATACCTAGTCATCCTGTATTAAACGCTGGATATGTTTTCCATTCTGT
AAAAAAAAAAAAAAAAAAAAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATCAGGAGACCGTGAAAAGCCACTTGGCTGCAGACATCCAGGCAGCAATTTACTTAC
CTTCCTCGCTGGCTCTGAGAACAACTCTGGCTCAGTCTTTCCACCATGAGCCTCAGACTT
GGCGCCATCTCCTCCTGTACCACTTCCAGCCCATTTCCTGTCCTCCAGGTATTGCTGCCA
TTGTCACTGCTCCTGACCACGCTGGTTCCCGCCACCATGGGAGCAGCTAAAATTGAGGGA
AGAATGGCGCACGTTGAACTTCGCTGCCTCTGCTTGAATACCGTCTCTGGCATTCATCCC
AGTAACATCCAAAGTTTGGAGGTGATCAGGGCAGGAGCTCACTGTGCCAAAGTCGAAGTG
ATAGCCACGCTGAAGAATGACAAGAAAATCTGCCTGGATCCAGAAGCACCCAGAATCAAG
AAAATAGTCCAAAAAATAATGGAAGATGGTGGGTCAGCTGCTTAATCCTTCTCCCTTTCT
GCCAAAGTGGTTTAACTCCCAGGAAGGTTAGGAATTTGAAGTCTTGGCTGTCTAGAGTTC
TTATTTATCCAGGATACCTAGTCATCCTGTATTAAACGCTGGATATGTTTTCCATTCTGT
AAAAAAAAAAAAAAAAAAAAAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SCYB7_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               SCYB7_PIG

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-222, gnl|bosTau2|chr6 (44833794-44833586)
               

               
               1-222, gnl|canFam2|chr13 (65464425-65465123)
               

               
               1-222, gnl|echTel1|scaffold_275173 (20025-19295)
               

               
               1-222, gnl|hg17|chr4 (75078324-75079016)
               

               
               1-222, gnl|Hg17|chr4 (75078507-75078734)
               

               
               1-222, gnl|loxAfr1|scaffold_7474 (39717-40395)
               

               
               1-222, gnl|mm7|chr5 (90739605-90740283)
               

               
               1-222, gnl|Mm7|chr5 (90739770-90739993)
               

               
               1-222, gnl|oryCun1|scaffold_197459 (205674-206341)
               

               
               1-222, gnl|panTro1|chr3 (58619759-58619067)
               

               
               1-222, gnl|rheMac2|chr5 (55832587-55831896)
               

               
               1-222, gnl|rn3|chr14 (18817504-18816836)
               


               
               254-362, gnl|bosTau2|chr6 (44833211-44833103)
               

               
               254-362, gnl|Hg17|chr4 (75079085-75079374)
               

               
               254-362, gnl|Mm7|chr5 (90740348-90740456)
               


               
               363-608, gnl|bosTau2|chr6 (44832977-44832733)
               

               
               363-608, gnl|Hg17|chr4 (75079488-75079732)
               

               
               363-608, gnl|Mm7|chr5 (90740591-90740805)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr6 (44833794-44833586)
               

               
               1-222, gnl|canFam2|chr13 (65464425-65465123)
               

               
               1-222, gnl|echTel1|scaffold_275173 (20025-19295)
               

               
               1-222, gnl|hg17|chr4 (75078324-75079016)
               

               
               1-222, gnl|Hg17|chr4 (75078507-75078734)
               

               
               1-222, gnl|loxAfr1|scaffold_7474 (39717-40395)
               

               
               1-222, gnl|mm7|chr5 (90739605-90740283)
               

               
               1-222, gnl|Mm7|chr5 (90739770-90739993)
               

               
               1-222, gnl|oryCun1|scaffold_197459 (205674-206341)
               

               
               1-222, gnl|panTro1|chr3 (58619759-58619067)
               

               
               1-222, gnl|rheMac2|chr5 (55832587-55831896)
               

               
               1-222, gnl|rn3|chr14 (18817504-18816836)
               


               
               254-362, gnl|bosTau2|chr6 (44833211-44833103)
               

               
               254-362, gnl|Hg17|chr4 (75079085-75079374)
               

               
               254-362, gnl|Mm7|chr5 (90740348-90740456)
               


               
               363-608, gnl|bosTau2|chr6 (44832977-44832733)
               

               
               363-608, gnl|Hg17|chr4 (75079488-75079732)
               

               
               363-608, gnl|Mm7|chr5 (90740591-90740805)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               nbm (0.0993246)

	1-222, gnl\|bosTau2\|chr6 (44833794-44833586)
	1-222, gnl\|canFam2\|chr13 (65464425-65465123)
	1-222, gnl\|echTel1\|scaffold_275173 (20025-19295)
	1-222, gnl\|hg17\|chr4 (75078324-75079016)
	1-222, gnl\|Hg17\|chr4 (75078507-75078734)
	1-222, gnl\|loxAfr1\|scaffold_7474 (39717-40395)
	1-222, gnl\|mm7\|chr5 (90739605-90740283)
	1-222, gnl\|Mm7\|chr5 (90739770-90739993)
	1-222, gnl\|oryCun1\|scaffold_197459 (205674-206341)
	1-222, gnl\|panTro1\|chr3 (58619759-58619067)
	1-222, gnl\|rheMac2\|chr5 (55832587-55831896)
	1-222, gnl\|rn3\|chr14 (18817504-18816836)

	254-362, gnl\|bosTau2\|chr6 (44833211-44833103)
	254-362, gnl\|Hg17\|chr4 (75079085-75079374)
	254-362, gnl\|Mm7\|chr5 (90740348-90740456)

	363-608, gnl\|bosTau2\|chr6 (44832977-44832733)
	363-608, gnl\|Hg17\|chr4 (75079488-75079732)
	363-608, gnl\|Mm7\|chr5 (90740591-90740805)