Non-Coding RNA Search

Ss1.1-Lym1-jns21_G05.f.5

Sequence:


               
               GGTTGGCCCTTTCCTCATCACCATTAAATTGTAAACAGGACTACTGCATGTATTCTCCTA
GCAATGGATTTAGAATGGAAAGCCAGACTTCTATATATTTTGACAGGTACTTTGTGAACT
GACCCAGTATCTAGGTGGTAAGGTTATTTGTGGCTTGGCATTTTGCTAAGTAACTACTTT
TCAGGAAATAATTACTTTTAAAAAAACATAAATGATCGATGTTCCAATTATGCATTGCTT
CCCCCAGTTTCAATCAAAGGTTATTTATGGGAAACTGTTGAGAACTATACTGTTTCTAAA
ACAGGCATTTATGGGGCTCATCACAGTAGATCTATCAGTACCCTCCAAAAAGGAGCCAGG
TGGTCAAACTTAGACTAACATCATCTTGTTAAGCCTATTTTATTTCTCTAGGAAAAAAAT
CAGTATCAAGGACTATTCTACTGCATTACTAGGAAATTCTTTTTAAAACTACATTGAAAA
CAATCACCGGGAACTTGATCCACATCGCACCCTTTTTCCTCAAACATCTTAGAAGCCTAA
GCTTCTGAGAATCATGGCGGTGTGATAGGCAGTCACATGCCACAGAGAAGATAATTAGTA
GTGGTTAAAGGCTGTTTGCACCTTTAAGGACCAGCTGGGCTATAGTGATTCTTGGGGCCA
GAGTGGCTTTATGTTTTTTCAAGATAATGACATGTGTTTGTTTGCTTCCTGAGTTTTTGA
ATGACCAGTTTACTGATTGTAGAAAATACTACATTCTTTTACATGGTTTTTGACTCACTG
GCTCAAAAAATTTCCCAGAATATCTGTAGCCACAGCAGCATAACAGTTTCCATTCTGTTT
CATGGGAATGAAATTAATTGTATCTGCTGATAACAGAATCTGGGTCATGTGGAAAGAAAA
AAAGATTGTTTCTTCCTGTCTTTTATGTTTTCAAATACTAGCTTCTCTGTTTGTATGATA
AAACACACTGCAGAACAGCTCCGAGAGCATCATTTTCCCATTAACTCTCTCTCTCCAGTT
GTGCTGGGAAGAGGAAAGGGTATATGAATATGTCTAACAATCTCAAATACCCAAATGTAA
TGGCCTAAATAAAATATTTATTTTATGCTTCAGCATGTTGTTATTTAAATTTTTAGGTAA
TGTATTTCTTTTGGTCTATTAAGGAAAGAGGCAGTCTGCAGAGAATTCAGCTGTGTTTCT
GTAAATCCTTGCAGATTGCATGTTCTTACAGTGGCCTGCTATTCAGGATAGGTATTCTTC
CATGCACTTTTTTTTAAAAAAAACCTTTCAGAATGTTGGAAGATAAAAATTATCATCAGT
GATTTGTTGAGATGTGAACTTAATGGTGCTGCTTAGTCAGTTTGCTTCCAATGTGGCCTC
CTGCCCAAAGGCCCCTGAGACCAGTGGAAATTAAAAGAATTTCAAAAAGCTTCAATTCCT
ACCTTCAAGCTACCAGCAAACTAGGATTGTGATAGTAATGAATGATATGATGAAAAAAGT
TTGACCAAGTTTGTTTTTTGTTGTTCCAGATTTGCAATGTATATTCTTTACTCCTTTTTA
AGAATGTTGACATATGGGTGTGAAGCTGCTAGAGAAACTTTGCTCAGATATTCGTTGTAA
GTGTCCCTTCACGTATATGTTGTAGAACTTCAGATTGATCACTGATCATATATTTCTTTA
GTAAGAATGTGTTAAAGTTACAACAGTCTCTTTAAAAGATGATTCAGTTCTATATAGTTA
TTGTGCTTTGCCTGGTCCTAAGTAGAGCCAGTTAAAAAAGTTTCATATGTATTTTTCCAG
TGTTAAATCTCACACATTGTACCCTTTGGAAATTTCCTTCCATCCTGATGAATAGAAAAG
GTTTTATATATATATATATATATATGTATGTATATATATATATATAGAGCCTCCTTATCC
TTGAAGTTTCACTATCTTTATGTTAAAAGTTGTGTATAATTGTTAAAATCTATGAAAAAG
AATAAAAAGTGGATTTAAATTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGGCCCTTTCCTCATCACCATTAAATTGTAAACAGGACTACTGCATGTATTCTCCTA
GCAATGGATTTAGAATGGAAAGCCAGACTTCTATATATTTTGACAGGTACTTTGTGAACT
GACCCAGTATCTAGGTGGTAAGGTTATTTGTGGCTTGGCATTTTGCTAAGTAACTACTTT
TCAGGAAATAATTACTTTTAAAAAAACATAAATGATCGATGTTCCAATTATGCATTGCTT
CCCCCAGTTTCAATCAAAGGTTATTTATGGGAAACTGTTGAGAACTATACTGTTTCTAAA
ACAGGCATTTATGGGGCTCATCACAGTAGATCTATCAGTACCCTCCAAAAAGGAGCCAGG
TGGTCAAACTTAGACTAACATCATCTTGTTAAGCCTATTTTATTTCTCTAGGAAAAAAAT
CAGTATCAAGGACTATTCTACTGCATTACTAGGAAATTCTTTTTAAAACTACATTGAAAA
CAATCACCGGGAACTTGATCCACATCGCACCCTTTTTCCTCAAACATCTTAGAAGCCTAA
GCTTCTGAGAATCATGGCGGTGTGATAGGCAGTCACATGCCACAGAGAAGATAATTAGTA
GTGGTTAAAGGCTGTTTGCACCTTTAAGGACCAGCTGGGCTATAGTGATTCTTGGGGCCA
GAGTGGCTTTATGTTTTTTCAAGATAATGACATGTGTTTGTTTGCTTCCTGAGTTTTTGA
ATGACCAGTTTACTGATTGTAGAAAATACTACATTCTTTTACATGGTTTTTGACTCACTG
GCTCAAAAAATTTCCCAGAATATCTGTAGCCACAGCAGCATAACAGTTTCCATTCTGTTT
CATGGGAATGAAATTAATTGTATCTGCTGATAACAGAATCTGGGTCATGTGGAAAGAAAA
AAAGATTGTTTCTTCCTGTCTTTTATGTTTTCAAATACTAGCTTCTCTGTTTGTATGATA
AAACACACTGCAGAACAGCTCCGAGAGCATCATTTTCCCATTAACTCTCTCTCTCCAGTT
GTGCTGGGAAGAGGAAAGGGTATATGAATATGTCTAACAATCTCAAATACCCAAATGTAA
TGGCCTAAATAAAATATTTATTTTATGCTTCAGCATGTTGTTATTTAAATTTTTAGGTAA
TGTATTTCTTTTGGTCTATTAAGGAAAGAGGCAGTCTGCAGAGAATTCAGCTGTGTTTCT
GTAAATCCTTGCAGATTGCATGTTCTTACAGTGGCCTGCTATTCAGGATAGGTATTCTTC
CATGCACTTTTTTTTAAAAAAAACCTTTCAGAATGTTGGAAGATAAAAATTATCATCAGT
GATTTGTTGAGATGTGAACTTAATGGTGCTGCTTAGTCAGTTTGCTTCCAATGTGGCCTC
CTGCCCAAAGGCCCCTGAGACCAGTGGAAATTAAAAGAATTTCAAAAAGCTTCAATTCCT
ACCTTCAAGCTACCAGCAAACTAGGATTGTGATAGTAATGAATGATATGATGAAAAAAGT
TTGACCAAGTTTGTTTTTTGTTGTTCCAGATTTGCAATGTATATTCTTTACTCCTTTTTA
AGAATGTTGACATATGGGTGTGAAGCTGCTAGAGAAACTTTGCTCAGATATTCGTTGTAA
GTGTCCCTTCACGTATATGTTGTAGAACTTCAGATTGATCACTGATCATATATTTCTTTA
GTAAGAATGTGTTAAAGTTACAACAGTCTCTTTAAAAGATGATTCAGTTCTATATAGTTA
TTGTGCTTTGCCTGGTCCTAAGTAGAGCCAGTTAAAAAAGTTTCATATGTATTTTTCCAG
TGTTAAATCTCACACATTGTACCCTTTGGAAATTTCCTTCCATCCTGATGAATAGAAAAG
GTTTTATATATATATATATATATATGTATGTATATATATATATATAGAGCCTCCTTATCC
TTGAAGTTTCACTATCTTTATGTTAAAAGTTGTGTATAATTGTTAAAATCTATGAAAAAG
AATAAAAAGTGGATTTAAATTAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               513-628, - strand, RNAz p=0.813744
               

               
               705-813, - strand, RNAz p=0.854461
               

               
               1163-1271, - strand, RNAz p=0.681719

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               513-628, - strand, RNAz p=0.813744
               

               
               705-813, - strand, RNAz p=0.854461
               

               
               1163-1271, - strand, RNAz p=0.681719

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               513-1271, gnl|bosTau2|chr1 (31733467-31734260)
               

               
               513-1271, gnl|Hg17|chr3 (115012129-115012922)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               513-1271, gnl|bosTau2|chr1 (31733467-31734260)
               

               
               513-1271, gnl|Hg17|chr3 (115012129-115012922)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

Help | Less info


               
               kid (1.16762)
               

               
               fco (1.10046)
               

               
               lin (0.728014)
               

               
               ret (0.514933)
               

               
               tes (0.415628)
               

               
               tra (0.369276)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (1.16762)
               

               
               fco (1.10046)
               

               
               lin (0.728014)
               

               
               ret (0.514933)
               

               
               tes (0.415628)
               

               
               tra (0.369276)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	513-628, - strand, RNAz p=0.813744
	705-813, - strand, RNAz p=0.854461
	1163-1271, - strand, RNAz p=0.681719

	513-1271, gnl\|bosTau2\|chr1 (31733467-31734260)
	513-1271, gnl\|Hg17\|chr3 (115012129-115012922)

	kid (1.16762)
	fco (1.10046)
	lin (0.728014)
	ret (0.514933)
	tes (0.415628)
	tra (0.369276)
	fhi (0.339155)
	vin (0.332557)
	hyp (0.285673)
	cbe (0.239234)
	ecc (0.23007)
	cty (0.20816)
	fcc (0.197785)
	col (0.195008)
	ton (0.1755)
	sin (0.174948)
	rec (0.17307)
	lun (0.150489)
	fat (0.147427)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	ute (0.132784)
	cbr (0.127975)
	sug (0.127291)
	bla (0.124347)
	ebs (0.118301)
	cbl (0.114797)
	jej (0.0989218)
	eje (0.0988338)