Ss1.1-Lym1-jns21_G11.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGTCAGATCAGCTGCTACAGATATATTTTCTTATCTAGTAGAGTTTAGTCCATCCATG GTCCGAGAATTTGTAATGCAAGAAGCCCAGCAGAGTGATGATGATATCCTTCTCATTAAT GTAGTAATTGAACAAATGATCTGTGATACCGATCCTGAGCTAGGAGGTGCTGTTCAGTTA ATGGGACTTCTTCGTACTCTAATAGATCCAGAGAATATGCTGGCTACAACTAATAAAACT GAAAAAAGTGAATTTCTAAATTTCTTCTACAACCATTGTATGCATGTCCTCACAGCACCA CTTTTGACCAATACTTCAGAAGACAGATGTGAAAAGGATAATGTAGTTGGATCTAACAAA AACAGCACGGTTTGTCCTGATAATTATCAAACAGCACAGCTGCTTGCCTTAATTTTAGAG CTACTCACATTTTGTGTGGAACATCACACATATCACATAAAAAACTATATTATGAACAAA GACTTGCTAAGAAGAGTCTTGGTCTTGATGAATTCAAAGCACACCTTCTTGGCCTTGTGT GCTCTTCGTTTTATGAGGCGGATAATTGGCCTTAAAGATGAATTTTATAATCGTTACATC ACCAAGGGAAATCTTTTTGAGCCAGTTATAAATGCTCTTCTGGATAATGGAACTCGGTAC AATCTCTTGAATTCAGCTGTTATTGAGTTATTTGAATTTATAAGAGTGGAAGATATCAAG TCTCTTACTGCACATATAGTTGAAAACTTTTATAAAGCACTTGAATCGATTGAATATGTT CAGACATTCAAAGGATTGAAGACTAAATATGAGCAAGAAAAAGACAGACAAAATCAGAAA CTGAACAGTGTACCATCTATATTGCGTAGTAACAGATTTCGCAGAGATGCAAAGACCTTG GAAGAGGATGAAGAAATGTGGTTTAATGAAGATGAAGAGGAGGAAGGAAAACCAGTTGTG GCATCAGTGGAAAAATCTAAACCTGAAGATGATTTTCCAGATAGTTACGAAAAATTCATG GAGACGAAAAAAGCAAAAGAAAGTGAAGACAAGGAAAACCTTCCCAAAAGGACATCTTCT GGTGGCTTCAAATTTACTTTCTCCCACTCCACCAGTGCTGCTAATGGAACAAACAGTACA AACAGTAAATCTGTAGTGGCTCAGTCACCACCAGCAAGTTCTAATGGATCCTCTTCCAAA ACAACAAACTTAGCTACGACAGTAACAGCCACCAAGGGAAGTTTGGTTGGTTTAGTGGAT TATCCAGATGATGAAGAGGAAGATGAAGAAGAAGAAACATCTCCCAGGAAAAGACCTCGT CTTGGCTCATAAAATATTTGCTAGGGACCCTCAACATGTGGTCTTACCAAATGCTGCAAC TGTTCGATGAGCTAAAAATCTGAATCAGAAAGCTCTCTCACTTGAACTTATAAATATACA AGGTGTAGCAAAAGACACTCAGTATATCAGCTAGGAGAGTTTAGTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGTCAGATCAGCTGCTACAGATATATTTTCTTATCTAGTAGAGTTTAGTCCATCCATG GTCCGAGAATTTGTAATGCAAGAAGCCCAGCAGAGTGATGATGATATCCTTCTCATTAAT GTAGTAATTGAACAAATGATCTGTGATACCGATCCTGAGCTAGGAGGTGCTGTTCAGTTA ATGGGACTTCTTCGTACTCTAATAGATCCAGAGAATATGCTGGCTACAACTAATAAAACT GAAAAAAGTGAATTTCTAAATTTCTTCTACAACCATTGTATGCATGTCCTCACAGCACCA CTTTTGACCAATACTTCAGAAGACAGATGTGAAAAGGATAATGTAGTTGGATCTAACAAA AACAGCACGGTTTGTCCTGATAATTATCAAACAGCACAGCTGCTTGCCTTAATTTTAGAG CTACTCACATTTTGTGTGGAACATCACACATATCACATAAAAAACTATATTATGAACAAA GACTTGCTAAGAAGAGTCTTGGTCTTGATGAATTCAAAGCACACCTTCTTGGCCTTGTGT GCTCTTCGTTTTATGAGGCGGATAATTGGCCTTAAAGATGAATTTTATAATCGTTACATC ACCAAGGGAAATCTTTTTGAGCCAGTTATAAATGCTCTTCTGGATAATGGAACTCGGTAC AATCTCTTGAATTCAGCTGTTATTGAGTTATTTGAATTTATAAGAGTGGAAGATATCAAG TCTCTTACTGCACATATAGTTGAAAACTTTTATAAAGCACTTGAATCGATTGAATATGTT CAGACATTCAAAGGATTGAAGACTAAATATGAGCAAGAAAAAGACAGACAAAATCAGAAA CTGAACAGTGTACCATCTATATTGCGTAGTAACAGATTTCGCAGAGATGCAAAGACCTTG GAAGAGGATGAAGAAATGTGGTTTAATGAAGATGAAGAGGAGGAAGGAAAACCAGTTGTG GCATCAGTGGAAAAATCTAAACCTGAAGATGATTTTCCAGATAGTTACGAAAAATTCATG GAGACGAAAAAAGCAAAAGAAAGTGAAGACAAGGAAAACCTTCCCAAAAGGACATCTTCT GGTGGCTTCAAATTTACTTTCTCCCACTCCACCAGTGCTGCTAATGGAACAAACAGTACA AACAGTAAATCTGTAGTGGCTCAGTCACCACCAGCAAGTTCTAATGGATCCTCTTCCAAA ACAACAAACTTAGCTACGACAGTAACAGCCACCAAGGGAAGTTTGGTTGGTTTAGTGGAT TATCCAGATGATGAAGAGGAAGATGAAGAAGAAGAAACATCTCCCAGGAAAAGACCTCGT CTTGGCTCATAAAATATTTGCTAGGGACCCTCAACATGTGGTCTTACCAAATGCTGCAAC TGTTCGATGAGCTAAAAATCTGAATCAGAAAGCTCTCTCACTTGAACTTATAAATATACA AGGTGTAGCAAAAGACACTCAGTATATCAGCTAGGAGAGTTTAGTTCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 82 entry(ies) | More info |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
| 1-101, gnl|bosTau2|chr11 (20624487-20624387) | |
| 1-101, gnl|canFam2|chr10 (59588443-59588580) | |
| 1-101, gnl|danRer3|chr20 (42153865-42154012) | |
| 1-101, gnl|dasNov1|scaffold_31350 (5192-5308) | |
| 1-101, gnl|echTel1|scaffold_280310 (11553-11696) | |
| 1-101, gnl|fr1|chrUn (46924188-46924325) | |
| 1-101, gnl|galGal2|chr5 (41163035-41163165) | |
| 1-101, gnl|hg17|chr2 (55723832-55723969) | |
| 1-101, gnl|Hg17|chr2 (55723939-55723839) | |
| 1-101, gnl|loxAfr1|scaffold_244 (174370-174229) | |
| 1-101, gnl|mm7|chr11 (29149223-29149086) | |
| 1-101, gnl|Mm7|chr11 (29149114-29149214) | |
| 1-101, gnl|monDom2|scaffold_1 (18525230-18525369) | |
| 1-101, gnl|oryCun1|scaffold_132615 (6717-6579) | |
| 1-101, gnl|panTro1|chr12 (57881422-57881559) | |
| 1-101, gnl|rheMac2|chr13 (55907331-55907468) | |
| 1-101, gnl|rn3|chr14 (110222253-110222116) | |
| 1-101, gnl|tetNig1|chr17 (10726542-10726405) | |
| 1-101, gnl|xenTro1|scaffold_392 (301950-302085) | |
| 103-234, gnl|bosTau2|chr11 (20620578-20620447) | |
| 103-234, gnl|canFam2|chr10 (59575513-59575666) | |
| 103-234, gnl|danRer3|chr20 (42153660-42153806) | |
| 103-234, gnl|dasNov1|scaffold_11144 (25147-24994) | |
| 103-234, gnl|echTel1|scaffold_240312 (1343-1190) | |
| 103-234, gnl|fr1|chrUn (46923904-46924045) | |
| 103-234, gnl|galGal2|chr5 (41161956-41162109) | |
| 103-234, gnl|hg17|chr2 (55720335-55720488) | |
| 103-234, gnl|Hg17|chr2 (55720485-55720354) | |
| 103-234, gnl|loxAfr1|scaffold_244 (180273-180122) | |
| 103-234, gnl|mm7|chr11 (29150951-29150798) | |
| 103-234, gnl|Mm7|chr11 (29150799-29150930) | |
| 103-234, gnl|monDom2|scaffold_1 (18517403-18517556) | |
| 103-234, gnl|oryCun1|scaffold_210724 (20318-20472) | |
| 103-234, gnl|panTro1|chr12 (57877948-57878101) | |
| 103-234, gnl|rheMac2|chr13 (55901521-55901674) | |
| 103-234, gnl|rn3|chr14 (110223609-110223456) | |
| 103-234, gnl|tetNig1|chr17 (10726845-10726704) | |
| 103-234, gnl|xenTro1|scaffold_392 (300681-300834) | |
| 235-340, gnl|bosTau2|chr11 (20618826-20618721) | |
| 235-340, gnl|Hg17|chr2 (55718568-55718463) | |
| 235-340, gnl|Mm7|chr11 (29152707-29152812) | |
| 539-709, gnl|bosTau2|chr11 (20609552-20609382) | |
| 539-709, gnl|canFam2|chr10 (59566806-59567006) | |
| 539-709, gnl|danRer3|chr20 (42150495-42150697) | |
| 539-709, gnl|dasNov1|scaffold_11144 (33957-33758) | |
| 539-709, gnl|echTel1|scaffold_288185 (50549-50720) | |
| 539-709, gnl|fr1|chrUn (46922609-46922805) | |
| 539-709, gnl|galGal2|chr5 (41159081-41159272) | |
| 539-709, gnl|hg17|chr2 (55706972-55707175) | |
| 539-709, gnl|Hg17|chr2 (55707150-55706980) | |
| 539-709, gnl|loxAfr1|scaffold_244 (188392-188194) | |
| 539-709, gnl|mm7|chr11 (29161503-29161307) | |
| 539-709, gnl|Mm7|chr11 (29161323-29161493) | |
| 539-709, gnl|monDom2|scaffold_1 (18505904-18506098) | |
| 539-709, gnl|oryCun1|scaffold_210724 (9828-10027) | |
| 539-709, gnl|panTro1|chr12 (57864594-57864797) | |
| 539-709, gnl|rheMac2|chr13 (55888553-55888756) | |
| 539-709, gnl|rn3|chr14 (110234766-110234572) | |
| 539-709, gnl|tetNig1|chr17 (10727757-10727571) | |
| 539-709, gnl|xenTro1|scaffold_392 (296429-296623) | |
| 845-1033, gnl|bosTau2|chr11 (20607013-20606825) | |
| 845-1033, gnl|canFam2|chr10 (59563662-59563859) | |
| 845-1033, gnl|danRer3|chr20 (42146835-42147037) | |
| 845-1033, gnl|dasNov1|scaffold_11144 (41245-41048) | |
| 845-1033, gnl|echTel1|scaffold_213014 (4799-4996) | |
| 845-1033, gnl|fr1|chrUn (46922174-46922362) | |
| 845-1033, gnl|galGal2|chr5 (41156814-41157015) | |
| 845-1033, gnl|hg17|chr2 (55703096-55703293) | |
| 845-1033, gnl|Hg17|chr2 (55703288-55703100) | |
| 845-1033, gnl|loxAfr1|scaffold_244 (191327-191130) | |
| 845-1033, gnl|mm7|chr11 (29163803-29163606) | |
| 845-1033, gnl|Mm7|chr11 (29163609-29163797) | |
| 845-1033, gnl|monDom2|scaffold_1 (18501927-18502124) | |
| 845-1033, gnl|oryCun1|scaffold_210724 (6349-6546) | |
| 845-1033, gnl|panTro1|chr12 (57860729-57860926) | |
| 845-1033, gnl|rheMac2|chr13 (55884599-55884796) | |
| 845-1033, gnl|rn3|chr14 (110237076-110236879) | |
| 845-1033, gnl|tetNig1|chr17 (10728193-10728038) | |
| 845-1033, gnl|xenTro1|scaffold_392 (294663-294859) | |
| 1235-1488, gnl|bosTau2|chr11 (20598870-20598616) | |
| 1235-1488, gnl|Hg17|chr2 (55688795-55688546) | |
| 1235-1488, gnl|Mm7|chr11 (29170460-29170709) |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-101, gnl|bosTau2|chr11 (20624487-20624387) | |
| 1-101, gnl|canFam2|chr10 (59588443-59588580) | |
| 1-101, gnl|danRer3|chr20 (42153865-42154012) | |
| 1-101, gnl|dasNov1|scaffold_31350 (5192-5308) | |
| 1-101, gnl|echTel1|scaffold_280310 (11553-11696) | |
| 1-101, gnl|fr1|chrUn (46924188-46924325) | |
| 1-101, gnl|galGal2|chr5 (41163035-41163165) | |
| 1-101, gnl|hg17|chr2 (55723832-55723969) | |
| 1-101, gnl|Hg17|chr2 (55723939-55723839) | |
| 1-101, gnl|loxAfr1|scaffold_244 (174370-174229) | |
| 1-101, gnl|mm7|chr11 (29149223-29149086) | |
| 1-101, gnl|Mm7|chr11 (29149114-29149214) | |
| 1-101, gnl|monDom2|scaffold_1 (18525230-18525369) | |
| 1-101, gnl|oryCun1|scaffold_132615 (6717-6579) | |
| 1-101, gnl|panTro1|chr12 (57881422-57881559) | |
| 1-101, gnl|rheMac2|chr13 (55907331-55907468) | |
| 1-101, gnl|rn3|chr14 (110222253-110222116) | |
| 1-101, gnl|tetNig1|chr17 (10726542-10726405) | |
| 1-101, gnl|xenTro1|scaffold_392 (301950-302085) | |
| 103-234, gnl|bosTau2|chr11 (20620578-20620447) | |
| 103-234, gnl|canFam2|chr10 (59575513-59575666) | |
| 103-234, gnl|danRer3|chr20 (42153660-42153806) | |
| 103-234, gnl|dasNov1|scaffold_11144 (25147-24994) | |
| 103-234, gnl|echTel1|scaffold_240312 (1343-1190) | |
| 103-234, gnl|fr1|chrUn (46923904-46924045) | |
| 103-234, gnl|galGal2|chr5 (41161956-41162109) | |
| 103-234, gnl|hg17|chr2 (55720335-55720488) | |
| 103-234, gnl|Hg17|chr2 (55720485-55720354) | |
| 103-234, gnl|loxAfr1|scaffold_244 (180273-180122) | |
| 103-234, gnl|mm7|chr11 (29150951-29150798) | |
| 103-234, gnl|Mm7|chr11 (29150799-29150930) | |
| 103-234, gnl|monDom2|scaffold_1 (18517403-18517556) | |
| 103-234, gnl|oryCun1|scaffold_210724 (20318-20472) | |
| 103-234, gnl|panTro1|chr12 (57877948-57878101) | |
| 103-234, gnl|rheMac2|chr13 (55901521-55901674) | |
| 103-234, gnl|rn3|chr14 (110223609-110223456) | |
| 103-234, gnl|tetNig1|chr17 (10726845-10726704) | |
| 103-234, gnl|xenTro1|scaffold_392 (300681-300834) | |
| 235-340, gnl|bosTau2|chr11 (20618826-20618721) | |
| 235-340, gnl|Hg17|chr2 (55718568-55718463) | |
| 235-340, gnl|Mm7|chr11 (29152707-29152812) | |
| 539-709, gnl|bosTau2|chr11 (20609552-20609382) | |
| 539-709, gnl|canFam2|chr10 (59566806-59567006) | |
| 539-709, gnl|danRer3|chr20 (42150495-42150697) | |
| 539-709, gnl|dasNov1|scaffold_11144 (33957-33758) | |
| 539-709, gnl|echTel1|scaffold_288185 (50549-50720) | |
| 539-709, gnl|fr1|chrUn (46922609-46922805) | |
| 539-709, gnl|galGal2|chr5 (41159081-41159272) | |
| 539-709, gnl|hg17|chr2 (55706972-55707175) | |
| 539-709, gnl|Hg17|chr2 (55707150-55706980) | |
| 539-709, gnl|loxAfr1|scaffold_244 (188392-188194) | |
| 539-709, gnl|mm7|chr11 (29161503-29161307) | |
| 539-709, gnl|Mm7|chr11 (29161323-29161493) | |
| 539-709, gnl|monDom2|scaffold_1 (18505904-18506098) | |
| 539-709, gnl|oryCun1|scaffold_210724 (9828-10027) | |
| 539-709, gnl|panTro1|chr12 (57864594-57864797) | |
| 539-709, gnl|rheMac2|chr13 (55888553-55888756) | |
| 539-709, gnl|rn3|chr14 (110234766-110234572) | |
| 539-709, gnl|tetNig1|chr17 (10727757-10727571) | |
| 539-709, gnl|xenTro1|scaffold_392 (296429-296623) | |
| 845-1033, gnl|bosTau2|chr11 (20607013-20606825) | |
| 845-1033, gnl|canFam2|chr10 (59563662-59563859) | |
| 845-1033, gnl|danRer3|chr20 (42146835-42147037) | |
| 845-1033, gnl|dasNov1|scaffold_11144 (41245-41048) | |
| 845-1033, gnl|echTel1|scaffold_213014 (4799-4996) | |
| 845-1033, gnl|fr1|chrUn (46922174-46922362) | |
| 845-1033, gnl|galGal2|chr5 (41156814-41157015) | |
| 845-1033, gnl|hg17|chr2 (55703096-55703293) | |
| 845-1033, gnl|Hg17|chr2 (55703288-55703100) | |
| 845-1033, gnl|loxAfr1|scaffold_244 (191327-191130) | |
| 845-1033, gnl|mm7|chr11 (29163803-29163606) | |
| 845-1033, gnl|Mm7|chr11 (29163609-29163797) | |
| 845-1033, gnl|monDom2|scaffold_1 (18501927-18502124) | |
| 845-1033, gnl|oryCun1|scaffold_210724 (6349-6546) | |
| 845-1033, gnl|panTro1|chr12 (57860729-57860926) | |
| 845-1033, gnl|rheMac2|chr13 (55884599-55884796) | |
| 845-1033, gnl|rn3|chr14 (110237076-110236879) | |
| 845-1033, gnl|tetNig1|chr17 (10728193-10728038) | |
| 845-1033, gnl|xenTro1|scaffold_392 (294663-294859) | |
| 1235-1488, gnl|bosTau2|chr11 (20598870-20598616) | |
| 1235-1488, gnl|Hg17|chr2 (55688795-55688546) | |
| 1235-1488, gnl|Mm7|chr11 (29170460-29170709) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| tes (0.623441) | |
| tbr (0.462535) | |
| liv (0.438853) | |
| ese (0.379507) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| hea (0.204499) | |
| rec (0.17307) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| tbr (0.462535) | |
| liv (0.438853) | |
| ese (0.379507) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| hea (0.204499) | |
| rec (0.17307) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) |