Ss1.1-Lym1-jns23_C12.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAGAGAGCCATGCTCATGAGGCAGCAAAGCTTTGGGAACAACCTCCCTCCCTCGTCTG GACTGCCAGTTCCAATGGGGAACCCCCGTCTTCCTCAGGGTGCTCCGCAGCAATTCCCCT ACCCACCAAACTATGGTACAAATCCCGGAACTCCACCCGCTTCTACCAGCCCCTTTTCAC AACTGGCAGGAAACCCTGAGGCAACCTTGGGCAACCGCAACAGCATGGTGAACAGAGGCA TGACAGGAAACATGGGAGGACAGTTTGGCACTGGAATCAATCCTCAGATGCAGCAGAATG TCTTCCAGTATCCAGGATCAGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTC TTAGCCCTGGGAGCTCCATGGTGCCGATGCCAATCCCTCCGCCTCAGAGCTCTCTGCTCC AGCAGACTCCGCCTGCTTCTGGCTACCAGTCACCAGACATGAAGGCCTGGCAGCAAGGAG CAATGGGAAACAACAATGTGTTCAGTCAAGCTGTCCAGAACCAGCCCACGCCTGCACAGC CAGGAGTGTACAACAATATGAGCATCACCGTGTCCATGGCAGGTGGAAATACAAATGTTC AGAACATGAACCCAATGATGGGCCAGATGCAGATGAGCTCTTTGCAGATGCCAGGAATGA ACACTGTGTGCCCTGAGCAGATAAATGATCCAGCCCTGAGACACACAGGCCTCTACTGCA ACCAGCTCTCATCTACTGACCTTCTCAAAACAGAAGCAGATGGAACCCAGGACAAGAAGA CAGAAGAGTTCTTCTCTGTGGTGACTACAGACTAGAGGAATGCTCTACAGGTGCAACAGG TTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGGACCCTTACCTGA ACCAGCCTGGTCAGCTCTCATCTACTGACCTTCTCAAAACAGAAGCAGATGGAACCCAGC AGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGG ACCCTTACCTGAACCAGCCTGGTCCACTGGGAACTCAAAAACCCACGGCAGGACCACAGA CCCCCCAGGCCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGACTGAATAACCACTTTTAA AGGAATGTGAAATTTAAATAATAGACATACAGAGATATACAAATATATTATATATTTTTC TGAGATTTTTGATATCTCAATCTGCAGCCATTCTTCAGGTCGTAGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAGAGAGCCATGCTCATGAGGCAGCAAAGCTTTGGGAACAACCTCCCTCCCTCGTCTG GACTGCCAGTTCCAATGGGGAACCCCCGTCTTCCTCAGGGTGCTCCGCAGCAATTCCCCT ACCCACCAAACTATGGTACAAATCCCGGAACTCCACCCGCTTCTACCAGCCCCTTTTCAC AACTGGCAGGAAACCCTGAGGCAACCTTGGGCAACCGCAACAGCATGGTGAACAGAGGCA TGACAGGAAACATGGGAGGACAGTTTGGCACTGGAATCAATCCTCAGATGCAGCAGAATG TCTTCCAGTATCCAGGATCAGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTC TTAGCCCTGGGAGCTCCATGGTGCCGATGCCAATCCCTCCGCCTCAGAGCTCTCTGCTCC AGCAGACTCCGCCTGCTTCTGGCTACCAGTCACCAGACATGAAGGCCTGGCAGCAAGGAG CAATGGGAAACAACAATGTGTTCAGTCAAGCTGTCCAGAACCAGCCCACGCCTGCACAGC CAGGAGTGTACAACAATATGAGCATCACCGTGTCCATGGCAGGTGGAAATACAAATGTTC AGAACATGAACCCAATGATGGGCCAGATGCAGATGAGCTCTTTGCAGATGCCAGGAATGA ACACTGTGTGCCCTGAGCAGATAAATGATCCAGCCCTGAGACACACAGGCCTCTACTGCA ACCAGCTCTCATCTACTGACCTTCTCAAAACAGAAGCAGATGGAACCCAGGACAAGAAGA CAGAAGAGTTCTTCTCTGTGGTGACTACAGACTAGAGGAATGCTCTACAGGTGCAACAGG TTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGGACCCTTACCTGA ACCAGCCTGGTCAGCTCTCATCTACTGACCTTCTCAAAACAGAAGCAGATGGAACCCAGC AGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGG ACCCTTACCTGAACCAGCCTGGTCCACTGGGAACTCAAAAACCCACGGCAGGACCACAGA CCCCCCAGGCCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGACTGAATAACCACTTTTAA AGGAATGTGAAATTTAAATAATAGACATACAGAGATATACAAATATATTATATATTTTTC TGAGATTTTTGATATCTCAATCTGCAGCCATTCTTCAGGTCGTAGCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-199, - strand, RNAz p=0.980389 | |
| 1035-1234, - strand, RNAz p=0.60763 | |
| 1097-1213, + strand, RNAz p=0.539765 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-199, - strand, RNAz p=0.980389 | |
| 1035-1234, - strand, RNAz p=0.60763 | |
| 1097-1213, + strand, RNAz p=0.539765 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-326, gnl|bosTau2|chr11 (53259447-53259772) | |
| 1-326, gnl|Hg17|chr2 (24876386-24876711) | |
| 1-326, gnl|Mm7|chr12 (4194281-4193956) | |
| 492-687, gnl|bosTau2|chr11 (53276502-53276697) | |
| 492-687, gnl|Hg17|chr2 (24892488-24892683) | |
| 492-687, gnl|Mm7|chr12 (4185754-4185559) | |
| 956-1248, gnl|bosTau2|chr11 (53518620-53518912) | |
| 956-1248, gnl|canFam2|chr17 (22103192-22103406) | |
| 956-1248, gnl|danRer3|chr20 (30114637-30114441) | |
| 956-1248, gnl|dasNov1|scaffold_3899 (77576-77362) | |
| 956-1248, gnl|echTel1|scaffold_325460 (33831-34002) | |
| 956-1248, gnl|fr1|chrUn (243002245-243002055) | |
| 956-1248, gnl|galGal2|chr3 (103442177-103441961) | |
| 956-1248, gnl|hg17|chr2 (24902699-24902913) | |
| 956-1248, gnl|Hg17|chr2 (24902737-24903029) | |
| 956-1248, gnl|loxAfr1|scaffold_7869 (35892-36106) | |
| 956-1248, gnl|mm7|chr12 (4176137-4175923) | |
| 956-1248, gnl|Mm7|chr12 (4176097-4175805) | |
| 956-1248, gnl|monDom2|scaffold_1 (152464656-152464442) | |
| 956-1248, gnl|oryCun1|scaffold_145591 (16781-16567) | |
| 956-1248, gnl|panTro1|chr12 (25781181-25781395) | |
| 956-1248, gnl|rheMac2|chr13 (24688605-24688819) | |
| 956-1248, gnl|rn3|chr6 (27229698-27229484) | |
| 956-1248, gnl|tetNig1|chr14 (1659931-1660112) | |
| 956-1248, gnl|xenTro1|scaffold_508 (850116-850341) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-326, gnl|bosTau2|chr11 (53259447-53259772) | |
| 1-326, gnl|Hg17|chr2 (24876386-24876711) | |
| 1-326, gnl|Mm7|chr12 (4194281-4193956) | |
| 492-687, gnl|bosTau2|chr11 (53276502-53276697) | |
| 492-687, gnl|Hg17|chr2 (24892488-24892683) | |
| 492-687, gnl|Mm7|chr12 (4185754-4185559) | |
| 956-1248, gnl|bosTau2|chr11 (53518620-53518912) | |
| 956-1248, gnl|canFam2|chr17 (22103192-22103406) | |
| 956-1248, gnl|danRer3|chr20 (30114637-30114441) | |
| 956-1248, gnl|dasNov1|scaffold_3899 (77576-77362) | |
| 956-1248, gnl|echTel1|scaffold_325460 (33831-34002) | |
| 956-1248, gnl|fr1|chrUn (243002245-243002055) | |
| 956-1248, gnl|galGal2|chr3 (103442177-103441961) | |
| 956-1248, gnl|hg17|chr2 (24902699-24902913) | |
| 956-1248, gnl|Hg17|chr2 (24902737-24903029) | |
| 956-1248, gnl|loxAfr1|scaffold_7869 (35892-36106) | |
| 956-1248, gnl|mm7|chr12 (4176137-4175923) | |
| 956-1248, gnl|Mm7|chr12 (4176097-4175805) | |
| 956-1248, gnl|monDom2|scaffold_1 (152464656-152464442) | |
| 956-1248, gnl|oryCun1|scaffold_145591 (16781-16567) | |
| 956-1248, gnl|panTro1|chr12 (25781181-25781395) | |
| 956-1248, gnl|rheMac2|chr13 (24688605-24688819) | |
| 956-1248, gnl|rn3|chr6 (27229698-27229484) | |
| 956-1248, gnl|tetNig1|chr14 (1659931-1660112) | |
| 956-1248, gnl|xenTro1|scaffold_508 (850116-850341) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| tes (0.207814) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eje (0.0988338) |