Non-Coding RNA Search

Ss1.1-Lym1-jns23_H11.f.5

Sequence:


               
               GAAACCTGAAATACAAAGATTTCTTTGATCCAGTTGAAAGTGATGAAGACATAGCAAGCA
TTCATGATGATGAACTGGCTTCACATGAAGAGGAAGAAATTGCTGAGGAAGGAGAACAAA
GCATTTCTGAGATGGAGGAAGATAATGACCTGGAGGAAAGCAGAGACAGTAAACAACATA
AAGAAACCTTGAAAAGAGTGACTTTTGCTCTGCCAGATGATGAGGAACCTGAAGATACAG
ATGTCTTAAATATACAGAAAGACTCTGATGAAGTTAAATCCTCTTTTGAAAAAAGACAGG
AAAAGATGAATGAAAAGATTGCATCTTTAGAAAAAGAATTGTTGGAAAAGAAACCATGGC
AGCTTCTAGGGGAGGTGACTGCACAGAAGCGCCCTGAAAACAGCCTCTTGGAAGAGACAC
TGCACTTTGACCACGCTGTGCGCATGGCACCAGTGATCACAGAGGAGACCACTCTTCAAC
TAGAAGATATCATTAAGCAGAGGATAAAAGATCAGGCTTGGGATGATGTCGTACGTAAAG
AAAAACCTAAGGAGGATGCATATGAATATAAAAAGCGTTTAACACTAGACCATGAGAAGA
GTAAATTGAGCCTTGCTGAAATTTATGAACAGGAATATATCAAACTCAACCAGCAAAAAA
CAGCAGAAGAAGAAAATCCAGAGCATGTAGAAATTCAGAAAATGATGGATTCCCTGTTCT
TAAAATTGGATGCCCTTTCAAACTTCCACTTCATCCCTAAACCGCCTGTTCCAGAGATTA
AAGTTGTGTCGAATCTGCCAGCCATCACCATGGAGGAGGTGGCCCCAGTGAGTGTCAGCG
ACGCAGCCCTCCTGGCCCCAGAGGAAGTCAAGGAGAAAAATAAAGCTGGAGATATAAAAA
CAGCTGCTGAGAAAACAGCTACAGACAAGAAGCGAGAAAGGAGGAAAAAGAAACATCAAA
AGCATATGAAAATAAAGGAGAAAGAAAAGCGGAGAAGACTACTTGAGAAGAGCAATCCAG
ATCAAGCAGGGAAATACACCAAAGCAGTAGCTTCGGAGAAGTTAAAACAGCTGACCAAAA
CAGGCAAAGCTTCTCTGTTAAAGGATGAAGGTAAAGACAAAGCCTTAAAATCATCTCAAG
CATTCTTTTCTAAATTACAAGATCAAGTAAAAATGCAAATCAATGATGCAAAGAAAACAG
AAAAGAAAAAGAAGAAAAAACAGGATATTTCGGTTCATAAATTAAAGCTGTAATATATTT
TGATTATATTTTGAATATAATGTAAATAATTAATGTGTAAGCTTATGTTCTGTCATTGTT
CTGTTTTGTAATAAAATTTTTGAGAACTTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACCTGAAATACAAAGATTTCTTTGATCCAGTTGAAAGTGATGAAGACATAGCAAGCA
TTCATGATGATGAACTGGCTTCACATGAAGAGGAAGAAATTGCTGAGGAAGGAGAACAAA
GCATTTCTGAGATGGAGGAAGATAATGACCTGGAGGAAAGCAGAGACAGTAAACAACATA
AAGAAACCTTGAAAAGAGTGACTTTTGCTCTGCCAGATGATGAGGAACCTGAAGATACAG
ATGTCTTAAATATACAGAAAGACTCTGATGAAGTTAAATCCTCTTTTGAAAAAAGACAGG
AAAAGATGAATGAAAAGATTGCATCTTTAGAAAAAGAATTGTTGGAAAAGAAACCATGGC
AGCTTCTAGGGGAGGTGACTGCACAGAAGCGCCCTGAAAACAGCCTCTTGGAAGAGACAC
TGCACTTTGACCACGCTGTGCGCATGGCACCAGTGATCACAGAGGAGACCACTCTTCAAC
TAGAAGATATCATTAAGCAGAGGATAAAAGATCAGGCTTGGGATGATGTCGTACGTAAAG
AAAAACCTAAGGAGGATGCATATGAATATAAAAAGCGTTTAACACTAGACCATGAGAAGA
GTAAATTGAGCCTTGCTGAAATTTATGAACAGGAATATATCAAACTCAACCAGCAAAAAA
CAGCAGAAGAAGAAAATCCAGAGCATGTAGAAATTCAGAAAATGATGGATTCCCTGTTCT
TAAAATTGGATGCCCTTTCAAACTTCCACTTCATCCCTAAACCGCCTGTTCCAGAGATTA
AAGTTGTGTCGAATCTGCCAGCCATCACCATGGAGGAGGTGGCCCCAGTGAGTGTCAGCG
ACGCAGCCCTCCTGGCCCCAGAGGAAGTCAAGGAGAAAAATAAAGCTGGAGATATAAAAA
CAGCTGCTGAGAAAACAGCTACAGACAAGAAGCGAGAAAGGAGGAAAAAGAAACATCAAA
AGCATATGAAAATAAAGGAGAAAGAAAAGCGGAGAAGACTACTTGAGAAGAGCAATCCAG
ATCAAGCAGGGAAATACACCAAAGCAGTAGCTTCGGAGAAGTTAAAACAGCTGACCAAAA
CAGGCAAAGCTTCTCTGTTAAAGGATGAAGGTAAAGACAAAGCCTTAAAATCATCTCAAG
CATTCTTTTCTAAATTACAAGATCAAGTAAAAATGCAAATCAATGATGCAAAGAAAACAG
AAAAGAAAAAGAAGAAAAAACAGGATATTTCGGTTCATAAATTAAAGCTGTAATATATTT
TGATTATATTTTGAATATAATGTAAATAATTAATGTGTAAGCTTATGTTCTGTCATTGTT
CTGTTTTGTAATAAAATTTTTGAGAACTTTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9D7V6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D7V6_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1368, gnl|bosTau2|chr4 (55913502-55912139)
               

               
               1-1368, gnl|Hg17|chr2 (71272749-71288889)
               

               
               1-1368, gnl|Mm7|chr7 (60141599-60129169)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1368, gnl|bosTau2|chr4 (55913502-55912139)
               

               
               1-1368, gnl|Hg17|chr2 (71272749-71288889)
               

               
               1-1368, gnl|Mm7|chr7 (60141599-60129169)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               bla (0.373042)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.373042)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	1-1368, gnl\|bosTau2\|chr4 (55913502-55912139)
	1-1368, gnl\|Hg17\|chr2 (71272749-71288889)
	1-1368, gnl\|Mm7\|chr7 (60141599-60129169)

	bla (0.373042)
	sag (0.182715)
	gul (0.177588)
	ill (0.175593)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	ste (0.135208)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	jca (0.11396)
	spc (0.113366)