Non-Coding RNA Search

Ss1.1-Lym1-jns26_H03.f.5

Sequence:


               
               TTTTATGCCCTCTATGCAATTTTTAGGCATGATCCAGCAGCCTTAACCCAAGGGAGGTTG
AGCCTGGTGGTCTGTGACAGCCCAGGACCTCTGCTGGGCTGGCCACTGCATTTTCCTCCT
CACCCCATGGCATCCTCTTTAAGAACTTAACTTTTCTTCTAAACCATCAAGGAGGGGGGC
TAACACGCTTTGTGACCCCCCCCTCCAAGTTCAGACTGACCCAATCTTGGTCTCCTGAAG
TACATTTATGGTTTTCTCATTGATTTTTTTTTGGTGCACTGACCTAAAAGCAGTGTGAGG
GTACTAACAGTTTTTATTTTTCTCCAAAATTCTCTTACAATGAAGGGTCTGATGTAGTTG
CCTTCACTCTATTTGTTCTATTAACATCTAGGATTAATTTAGTGTTCTTTTCTAAACTGG
TCCAGTTAACCGCGGGGCACAGTGTTTCCTGGAGAGGCAGGGCGTGTGGTGAGAGTGATG
TTTGAGGATGCTCTGTGTTTAAGATGGTCTGCAAACAGGTGCCTGTGGAGCCAAGTGCAA
GATATTGGTGAAGGATGAGGACCAAAGGAAACACGGTACTTTTGGGCTTGCCTGTCATTT
TTTTCCCTTTACATAATAGCACCACTCTGAGGCAGCCGCTGCCCAGTCGGCAGGAATAAT
CAGTGATGTGGGGACTGGGGTGAGTTGGAAAGGACACATCCTTACTGTCACGCTGTAGCC
AGTAAGAGTACCACAGGAGAATCTGGGCCAAATATTCTCAATTTTTTTCCCCCCTAGAGA
ATCCAGAAATCCAGCCTTTGATATAAAATTATTTTTAAATATCGGTCACAAATTATTTTT
TATAAACACTGAGCAGGCAGAAGGGACCAAACAGTCAATGGGGAAATCTGGCTCCTGGGG
GCTGTTTGTGACCTTGGATGTAAGAACATGTATGCCTTGTCCTTTTAACCTTGAGACAAC
TCCTTCGGCACTGCTTCTCTCTCTCTCAGGCCAAGTCCATAGTGCCTGACCCTAGAAGGC
TCCTCCGGGGCCTGGGGAGGCAGCCTCAGAGCTGTGAGCTCATGGATCAATGGATGCCAG
CGTGGCCTTGGCTCGCTGTCAGGGTGAGCGGGGCAGGTGCTAAGGAGCTGCAGCAAAGAG
ATGCGGACTCACATCTGGTGCCTGGGTTTGTTCACCGTCCACTTCCCCTGTGACAGTGTA
ATCACTCACGACCAGCCCCAAGTTCTGGGCAAACATGAAGCCTGGAGTGGTAATAAAATC
TTTTTTAACTTGTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTATGCCCTCTATGCAATTTTTAGGCATGATCCAGCAGCCTTAACCCAAGGGAGGTTG
AGCCTGGTGGTCTGTGACAGCCCAGGACCTCTGCTGGGCTGGCCACTGCATTTTCCTCCT
CACCCCATGGCATCCTCTTTAAGAACTTAACTTTTCTTCTAAACCATCAAGGAGGGGGGC
TAACACGCTTTGTGACCCCCCCCTCCAAGTTCAGACTGACCCAATCTTGGTCTCCTGAAG
TACATTTATGGTTTTCTCATTGATTTTTTTTTGGTGCACTGACCTAAAAGCAGTGTGAGG
GTACTAACAGTTTTTATTTTTCTCCAAAATTCTCTTACAATGAAGGGTCTGATGTAGTTG
CCTTCACTCTATTTGTTCTATTAACATCTAGGATTAATTTAGTGTTCTTTTCTAAACTGG
TCCAGTTAACCGCGGGGCACAGTGTTTCCTGGAGAGGCAGGGCGTGTGGTGAGAGTGATG
TTTGAGGATGCTCTGTGTTTAAGATGGTCTGCAAACAGGTGCCTGTGGAGCCAAGTGCAA
GATATTGGTGAAGGATGAGGACCAAAGGAAACACGGTACTTTTGGGCTTGCCTGTCATTT
TTTTCCCTTTACATAATAGCACCACTCTGAGGCAGCCGCTGCCCAGTCGGCAGGAATAAT
CAGTGATGTGGGGACTGGGGTGAGTTGGAAAGGACACATCCTTACTGTCACGCTGTAGCC
AGTAAGAGTACCACAGGAGAATCTGGGCCAAATATTCTCAATTTTTTTCCCCCCTAGAGA
ATCCAGAAATCCAGCCTTTGATATAAAATTATTTTTAAATATCGGTCACAAATTATTTTT
TATAAACACTGAGCAGGCAGAAGGGACCAAACAGTCAATGGGGAAATCTGGCTCCTGGGG
GCTGTTTGTGACCTTGGATGTAAGAACATGTATGCCTTGTCCTTTTAACCTTGAGACAAC
TCCTTCGGCACTGCTTCTCTCTCTCTCAGGCCAAGTCCATAGTGCCTGACCCTAGAAGGC
TCCTCCGGGGCCTGGGGAGGCAGCCTCAGAGCTGTGAGCTCATGGATCAATGGATGCCAG
CGTGGCCTTGGCTCGCTGTCAGGGTGAGCGGGGCAGGTGCTAAGGAGCTGCAGCAAAGAG
ATGCGGACTCACATCTGGTGCCTGGGTTTGTTCACCGTCCACTTCCCCTGTGACAGTGTA
ATCACTCACGACCAGCCCCAAGTTCTGGGCAAACATGAAGCCTGGAGTGGTAATAAAATC
TTTTTTAACTTGTAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               3-274, - strand, RNAz p=0.999967

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-274, - strand, RNAz p=0.999967

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               3-263, BP162781 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP162781.1|), blast E-value=0, identity=93.87% 
               

               
               3-263, CJ018974 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ018974.1|), blast E-value=0, identity=94.25% 
               

               
               3-195, DB792861 full-length enriched swine cDNA library, adult immature 
(dbj|DB792861.1|), blast E-value=0, identity=100% 
               

               
               3-263, DB796381 full-length enriched swine cDNA library, adult immature 
(dbj|DB796381.1|), blast E-value=0, identity=96.55% 
               

               
               3-263, DB796517 full-length enriched swine cDNA library, adult immature 
(dbj|DB796517.1|), blast E-value=0, identity=96.55% 
               

               
               3-263, EST-AR179G11 Infected Porcine Peripheral Blood Cell cDNA library 
(gb|DV226865.1|), blast E-value=0, identity=94.25%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               3-263, BP162781 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP162781.1|), blast E-value=0, identity=93.87% 
               

               
               3-263, CJ018974 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ018974.1|), blast E-value=0, identity=94.25% 
               

               
               3-195, DB792861 full-length enriched swine cDNA library, adult immature 
(dbj|DB792861.1|), blast E-value=0, identity=100% 
               

               
               3-263, DB796381 full-length enriched swine cDNA library, adult immature 
(dbj|DB796381.1|), blast E-value=0, identity=96.55% 
               

               
               3-263, DB796517 full-length enriched swine cDNA library, adult immature 
(dbj|DB796517.1|), blast E-value=0, identity=96.55% 
               

               
               3-263, EST-AR179G11 Infected Porcine Peripheral Blood Cell cDNA library 
(gb|DV226865.1|), blast E-value=0, identity=94.25%

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               3-1119, gnl|bosTau2|chr7 (43199435-43200548)
               

               
               3-1119, gnl|Hg17|chr5 (150627350-150628808)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1119, gnl|bosTau2|chr7 (43199435-43200548)
               

               
               3-1119, gnl|Hg17|chr5 (150627350-150628808)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               clu (1.07681)
               

               
               cly (0.965135)
               

               
               ute (0.531138)
               

               
               duo (0.518403)
               

               
               cag (0.453583)
               

               
               cty (0.41632)
               

               
               che (0.408942)
               

               
               col (0.390016)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               liv (0.292569)
               

               
               cga (0.279096)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.07681)
               

               
               cly (0.965135)
               

               
               ute (0.531138)
               

               
               duo (0.518403)
               

               
               cag (0.453583)
               

               
               cty (0.41632)
               

               
               che (0.408942)
               

               
               col (0.390016)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               liv (0.292569)
               

               
               cga (0.279096)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	3-263, BP162781 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP162781.1\|), blast E-value=0, identity=93.87%
	3-263, CJ018974 full-length enriched swine cDNA library, adult spleen Sus (dbj\|CJ018974.1\|), blast E-value=0, identity=94.25%
	3-195, DB792861 full-length enriched swine cDNA library, adult immature (dbj\|DB792861.1\|), blast E-value=0, identity=100%
	3-263, DB796381 full-length enriched swine cDNA library, adult immature (dbj\|DB796381.1\|), blast E-value=0, identity=96.55%
	3-263, DB796517 full-length enriched swine cDNA library, adult immature (dbj\|DB796517.1\|), blast E-value=0, identity=96.55%
	3-263, EST-AR179G11 Infected Porcine Peripheral Blood Cell cDNA library (gb\|DV226865.1\|), blast E-value=0, identity=94.25%

	3-1119, gnl\|bosTau2\|chr7 (43199435-43200548)
	3-1119, gnl\|Hg17\|chr5 (150627350-150628808)

	clu (1.07681)
	cly (0.965135)
	ute (0.531138)
	duo (0.518403)
	cag (0.453583)
	cty (0.41632)
	che (0.408942)
	col (0.390016)
	cje (0.330469)
	csp (0.322373)
	liv (0.292569)
	cga (0.279096)
	nbm (0.198649)
	fcc (0.197785)
	ton (0.1755)
	fhi (0.169578)
	nco (0.161734)
	eli (0.151814)
	lun (0.150489)
	fat (0.147427)
	cov (0.132153)
	ova (0.129132)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)
	jej (0.0989218)