Non-Coding RNA Search

Ss1.1-Lym1-jns27_A01.f.5.5

Sequence:


               
               CCAACGGGTCTAAAGCAGTTGCAAGAACTGCAAGGAAAAGGAAGCCTTCACCAGAACCAG
AAGGTGAAGTCGGGCCCCCTAAGATCAATGGAGAGGCACAGCCCTGGCTGTCCACATCCA
CTGAAGGGCTCAAGATCCCCATTACGCCTACATCCTCTTTTGTGTCTCCACCACCACCCA
CTGCCTCACCTCATTCCAACCGGACCACACCGCCTGAAGCGGCCCAGAACGGCCAGTCCC
CCATGGCAGCCCTGATCTTAGTTGCAGACAATGCTGGAGGCAGTCATGCCTCTAAAGATG
CCAATCAGGTGCACTCCACCACGAGGAGGAACAGCAGCAGTCCACCGTCTCCGTCCTCTA
TGAACCAAAGAAGGCTGGGCCCCAGAGAGGTAGGGGGCCAGGGGGCAGGCAGCACAGGAG
GACTGGAGCCAGTGCACCCCGCCAGCCTCCCGGACTCCTCTCTGGCAGCCAGTGCCCCGC
TGTGCTGCACCCTCTGCCACGAGCGGCTGGAGGACACCCACTTTGTGCAGTGCCCGTCCG
TTCCTTCGCACAAGTTCTGCTTCCCTTGCTCCAGACAAAGCATCAAACAGCAGGGAGCTA
GTGGAGAGGTCTATTGTCCCAGTGGGGAAAAATGCCCTCTTGTGGGCTCCAATGTCCCCT
GGGCCTTCATGCAAGGGGAAATTGCAACCATCCTTGCTGGAGATGTGAAAGTGAAAAAAG
AGAGAGACTCTTGACTTTCCGGTTTGAGAAAAACCCAATGATTACCCTTAACTAAAACTG
CTTGAATTGTATATATCTCCATATATATAAATATATATATATATATACACACATATATAT
ATATATATCCAAGACAAGGGAAATGTAGACTTCATAAACATGGCTGTATAATTTTGATTT
TTTTTGAATACATTGTGTTTCTATTTTTTTTTTGACGACAAAAGGTATGTACTTATAAAG
GCATTTTCTTCTTTTGTTAACGTTATTAGCATATCTTTGTGCTTTATCCTGGTTACCTTT
CAATGTAGGCTGTGACTTGCGCTGCTTTTTTAGGGCACTTGGCAAATCAGAACTGCTTCT
AGCTGTATTTGTATGCACTTATTTTAAAAAGAAAAAAAAAAGCCAAATACATTTTCTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACGGGTCTAAAGCAGTTGCAAGAACTGCAAGGAAAAGGAAGCCTTCACCAGAACCAG
AAGGTGAAGTCGGGCCCCCTAAGATCAATGGAGAGGCACAGCCCTGGCTGTCCACATCCA
CTGAAGGGCTCAAGATCCCCATTACGCCTACATCCTCTTTTGTGTCTCCACCACCACCCA
CTGCCTCACCTCATTCCAACCGGACCACACCGCCTGAAGCGGCCCAGAACGGCCAGTCCC
CCATGGCAGCCCTGATCTTAGTTGCAGACAATGCTGGAGGCAGTCATGCCTCTAAAGATG
CCAATCAGGTGCACTCCACCACGAGGAGGAACAGCAGCAGTCCACCGTCTCCGTCCTCTA
TGAACCAAAGAAGGCTGGGCCCCAGAGAGGTAGGGGGCCAGGGGGCAGGCAGCACAGGAG
GACTGGAGCCAGTGCACCCCGCCAGCCTCCCGGACTCCTCTCTGGCAGCCAGTGCCCCGC
TGTGCTGCACCCTCTGCCACGAGCGGCTGGAGGACACCCACTTTGTGCAGTGCCCGTCCG
TTCCTTCGCACAAGTTCTGCTTCCCTTGCTCCAGACAAAGCATCAAACAGCAGGGAGCTA
GTGGAGAGGTCTATTGTCCCAGTGGGGAAAAATGCCCTCTTGTGGGCTCCAATGTCCCCT
GGGCCTTCATGCAAGGGGAAATTGCAACCATCCTTGCTGGAGATGTGAAAGTGAAAAAAG
AGAGAGACTCTTGACTTTCCGGTTTGAGAAAAACCCAATGATTACCCTTAACTAAAACTG
CTTGAATTGTATATATCTCCATATATATAAATATATATATATATATACACACATATATAT
ATATATATCCAAGACAAGGGAAATGTAGACTTCATAAACATGGCTGTATAATTTTGATTT
TTTTTGAATACATTGTGTTTCTATTTTTTTTTTGACGACAAAAGGTATGTACTTATAAAG
GCATTTTCTTCTTTTGTTAACGTTATTAGCATATCTTTGTGCTTTATCCTGGTTACCTTT
CAATGTAGGCTGTGACTTGCGCTGCTTTTTTAGGGCACTTGGCAAATCAGAACTGCTTCT
AGCTGTATTTGTATGCACTTATTTTAAAAAGAAAAAAAAAAGCCAAATACATTTTCTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WUH8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WUH8_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               16-134, - strand, RNAz p=0.883908
               

               
               375-734, - strand, RNAz p=0.898824

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               16-134, - strand, RNAz p=0.883908
               

               
               375-734, - strand, RNAz p=0.898824

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               16-814, gnl|bosTau2|chr28 (3330387-3331187)
               

               
               16-814, gnl|Hg17|chr1 (231050336-231049535)
               

               
               16-814, gnl|Mm7|chr8 (125179435-125178612)
               


               
               424-658, gnl|bosTau2|chr10 (61706277-61706043)
               

               
               424-658, gnl|Hg17|chr14 (76561808-76561574)
               

               
               424-658, gnl|Mm7|chr12 (84884479-84884245)
               


               
               822-1140, gnl|bosTau2|chr28 (3331161-3331484)
               

               
               822-1140, gnl|Hg17|chr1 (231049561-231049235)
               

               
               822-1140, gnl|Mm7|chr8 (125178662-125178267)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-814, gnl|bosTau2|chr28 (3330387-3331187)
               

               
               16-814, gnl|Hg17|chr1 (231050336-231049535)
               

               
               16-814, gnl|Mm7|chr8 (125179435-125178612)
               


               
               424-658, gnl|bosTau2|chr10 (61706277-61706043)
               

               
               424-658, gnl|Hg17|chr14 (76561808-76561574)
               

               
               424-658, gnl|Mm7|chr12 (84884479-84884245)
               


               
               822-1140, gnl|bosTau2|chr28 (3331161-3331484)
               

               
               822-1140, gnl|Hg17|chr1 (231049561-231049235)
               

               
               822-1140, gnl|Mm7|chr8 (125178662-125178267)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               sme (0.91631)
               

               
               mga (0.64082)
               

               
               csp (0.483559)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               lnt (0.284616)
               

               
               ssp (0.271039)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.91631)
               

               
               mga (0.64082)
               

               
               csp (0.483559)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               lnt (0.284616)
               

               
               ssp (0.271039)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	16-134, - strand, RNAz p=0.883908
	375-734, - strand, RNAz p=0.898824

	16-814, gnl\|bosTau2\|chr28 (3330387-3331187)
	16-814, gnl\|Hg17\|chr1 (231050336-231049535)
	16-814, gnl\|Mm7\|chr8 (125179435-125178612)

	424-658, gnl\|bosTau2\|chr10 (61706277-61706043)
	424-658, gnl\|Hg17\|chr14 (76561808-76561574)
	424-658, gnl\|Mm7\|chr12 (84884479-84884245)

	822-1140, gnl\|bosTau2\|chr28 (3331161-3331484)
	822-1140, gnl\|Hg17\|chr1 (231049561-231049235)
	822-1140, gnl\|Mm7\|chr8 (125178662-125178267)

	sme (0.91631)
	mga (0.64082)
	csp (0.483559)
	mgm (0.360685)
	vin (0.332557)
	nje (0.33184)
	isp (0.300752)
	bfe (0.299715)
	lnt (0.284616)
	ssp (0.271039)
	jej (0.197844)
	col (0.195008)
	ldo (0.194005)
	sag (0.182715)
	duo (0.172801)
	fat (0.147427)
	csk (0.140746)
	nmm (0.132802)
	ret (0.128733)
	eru (0.120048)
	ebs (0.118301)
	cbl (0.114797)
	cty (0.10408)