Non-Coding RNA Search

Ss1.1-Lym1-jns39_C07.f.5

Sequence:


               
               AAGGTCAGGTTTTATTCTGGTGTCTGGGGGAAGCTTTGTTAAATTTGTGTTAATGTGGGT
AAATCTGACTACTTAATTCCACCACTTCCCTGCAAATAGGACAAGAGGGCAAGGGTCTTG
TCTGCTGCTTTGTTTCTTCTAAGTAGGCATTTAGATCATTCCTTAGGCTTCTTCTTTTCA
CTTTACTGCTCTACTGCTGCTAGTTTTAGTCTTTAGCACACTAGGTGGTATGCCTTTATT
AGCATAAGAAAAATAACTTTAACAGGAGCTTTTACATATTATTGGGGTGGGGGTGGTAAG
GGCCGGGTGGGCGGCTGCCGAACCCACTCGGGCGTTTCCCTCTGTTGTGGCGCTTTCTAC
AGTTACTGCTGCAGCTTTAAATACCTGAAAGCTTCTGGTATTGACATTTTAGGGAAATGT
TAGGCTCAGAACTTAAGTGTTTCGGGTGGGTTTTTGTGTGGAGGGAAGGGGTAGTCTTTT
AATTTTTTGATTTTTGAGCATTTCTGCTCTGGGGTACGTCAGTGAACTTTATTTACAGTG
CTTGGATTTGGCAGGTTGGTCTGCCTGGAACTGTTTCCACATCATGTAAAGCAAAGGTAG
TTAGTGTCCCATTACCGTGTGGCTTAGGGATTTGTTTTTTAAGATCAGCCATGTCAGCTG
GTATTAGACTCCCTAAAATCTATCAGTGATAAAGTAACATTGAAAAAATGCTTTTAGAAA
TTCAAATTACAGACAAAAAGTGCATAAGAGCTGGTATTTTCTAAGTGCCTCTGTTTAATT
AAGGTCACGCGGTGCCAAGTACCATTCTTGCAAATGATTCTTTGATACAACTGACCAGTG
CTTATTGAACAAAAACACACAGATACATATGAGTAATTATTGGCAGTAGGTTTTAATTAT
TGGGTAAAAAATAACATTGAAATATGGGACCTGTGAGTTGGGTAATTTTCACTAGTTTTT
TTGTTGGTGTGATTTGAAACCTAGAAGTGGAGTAAAATTTGACTATTTAAAATGTTTCCC
CAAAAATGAAGATTTAAATGCGTTTTGTACTGAAAAACAAATCATAACTCCTAAGTCTCA
GCCACCTTAAGCTTGAAAGAAGAGTCGTTGGTATTTTGTAAATATCAGGCTTTCCTATTA
GAAAATCGTATTTATGAATTCTGGTATCTGAAAAAAAGCAAAACAAGCAAAGAAAGCAAA
CAGTACCCAGACTTGAATTCCTTCTAAATTTGAAAAATAAAGTAGTAAGAAATTGTGTCA
TGCTAAGTACAAAATGCAAATTCTAGAGAGAAGACTTTTCCTTCATTTCAAAACATTCTT
TACCAATACTTTCTTTGAAAGAAGCAGCTTACTTTTGGGGGCGACTGAAATTGGAGACAT
TATTGGCTCTAGCGTCTTTTTTGTGAAAAAAACTTAAAAATCAGTGCAAATGAAGTAAGC
GCAAAAGGAAGTTAGTTTTAATTATGTAGCTTCTGTTGTTATTACAAATTTTTTGTCTTT
TTTACCTCAGTCTGAACAAATAAAAGGAGTTTGCCTGCATGCTGGACATGCTTCAGTACA
CGTGAATAGCCTATACATAACGTCTGTTAGATTTTAGGGTGTCAGAGCCACTATGGAATT
CTAAAGTGTTCCTAAATCATGTTCTTGTAAATCCCCCAGCCTTTTAAATACAGTTGTTCA
AGGACACCAATGGAGGACCTGTATCTGTTGGCTGTTCATTTCACGTAAACGGATCGACTC
CTGACCTTTGGTCATGATTTTAAAATATGAGAGTTGCAAACAACAAAGAATGGGATAGAC
TCTTAAATAAAGCATTTGTCATCTGTCCCTTGAATATAGAATTTGGTTTTAATTTTATAA
TTCTGTGGGCAAACATGACAAAATGGTGTATTAATATATACAGAGAATATAATTTTAAAT
TACATCTTATAGTTTTCCTATTCCAAGGTGAAATAATGCATTTAGTAATTTGGGGGTAGG
GTGGAAAAGTATTATGTTTAACTGGAGTTGACAGATATGAGCCCCTTAGAAATTACGATT
TTCTCTCTTTTAAAAGAAATCTGATTTATAGCTCTTGAAAACCATTGCCACTCGGTTTCC
AATAATGATTAAAATTCTTTTAAAATTAGAATTGCCAATGCCTTGACCTTTGAGAAGGAT
TTCTTAGAAATACGTCCTACATTTAATTAAACTTTTTTCATTAAAATATGGTATTGGATG
TTAACTTTTACACAGTTCTGAGCACCATTAATATCTGGAAAGTGTCTTGAAAGATCAATG
GAAAGTTAAACATTCTAAATTTAACATGAATACATTTCTTTTTGATTCAGAAAATAAAAT
CAGATTTTTCAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTCAGGTTTTATTCTGGTGTCTGGGGGAAGCTTTGTTAAATTTGTGTTAATGTGGGT
AAATCTGACTACTTAATTCCACCACTTCCCTGCAAATAGGACAAGAGGGCAAGGGTCTTG
TCTGCTGCTTTGTTTCTTCTAAGTAGGCATTTAGATCATTCCTTAGGCTTCTTCTTTTCA
CTTTACTGCTCTACTGCTGCTAGTTTTAGTCTTTAGCACACTAGGTGGTATGCCTTTATT
AGCATAAGAAAAATAACTTTAACAGGAGCTTTTACATATTATTGGGGTGGGGGTGGTAAG
GGCCGGGTGGGCGGCTGCCGAACCCACTCGGGCGTTTCCCTCTGTTGTGGCGCTTTCTAC
AGTTACTGCTGCAGCTTTAAATACCTGAAAGCTTCTGGTATTGACATTTTAGGGAAATGT
TAGGCTCAGAACTTAAGTGTTTCGGGTGGGTTTTTGTGTGGAGGGAAGGGGTAGTCTTTT
AATTTTTTGATTTTTGAGCATTTCTGCTCTGGGGTACGTCAGTGAACTTTATTTACAGTG
CTTGGATTTGGCAGGTTGGTCTGCCTGGAACTGTTTCCACATCATGTAAAGCAAAGGTAG
TTAGTGTCCCATTACCGTGTGGCTTAGGGATTTGTTTTTTAAGATCAGCCATGTCAGCTG
GTATTAGACTCCCTAAAATCTATCAGTGATAAAGTAACATTGAAAAAATGCTTTTAGAAA
TTCAAATTACAGACAAAAAGTGCATAAGAGCTGGTATTTTCTAAGTGCCTCTGTTTAATT
AAGGTCACGCGGTGCCAAGTACCATTCTTGCAAATGATTCTTTGATACAACTGACCAGTG
CTTATTGAACAAAAACACACAGATACATATGAGTAATTATTGGCAGTAGGTTTTAATTAT
TGGGTAAAAAATAACATTGAAATATGGGACCTGTGAGTTGGGTAATTTTCACTAGTTTTT
TTGTTGGTGTGATTTGAAACCTAGAAGTGGAGTAAAATTTGACTATTTAAAATGTTTCCC
CAAAAATGAAGATTTAAATGCGTTTTGTACTGAAAAACAAATCATAACTCCTAAGTCTCA
GCCACCTTAAGCTTGAAAGAAGAGTCGTTGGTATTTTGTAAATATCAGGCTTTCCTATTA
GAAAATCGTATTTATGAATTCTGGTATCTGAAAAAAAGCAAAACAAGCAAAGAAAGCAAA
CAGTACCCAGACTTGAATTCCTTCTAAATTTGAAAAATAAAGTAGTAAGAAATTGTGTCA
TGCTAAGTACAAAATGCAAATTCTAGAGAGAAGACTTTTCCTTCATTTCAAAACATTCTT
TACCAATACTTTCTTTGAAAGAAGCAGCTTACTTTTGGGGGCGACTGAAATTGGAGACAT
TATTGGCTCTAGCGTCTTTTTTGTGAAAAAAACTTAAAAATCAGTGCAAATGAAGTAAGC
GCAAAAGGAAGTTAGTTTTAATTATGTAGCTTCTGTTGTTATTACAAATTTTTTGTCTTT
TTTACCTCAGTCTGAACAAATAAAAGGAGTTTGCCTGCATGCTGGACATGCTTCAGTACA
CGTGAATAGCCTATACATAACGTCTGTTAGATTTTAGGGTGTCAGAGCCACTATGGAATT
CTAAAGTGTTCCTAAATCATGTTCTTGTAAATCCCCCAGCCTTTTAAATACAGTTGTTCA
AGGACACCAATGGAGGACCTGTATCTGTTGGCTGTTCATTTCACGTAAACGGATCGACTC
CTGACCTTTGGTCATGATTTTAAAATATGAGAGTTGCAAACAACAAAGAATGGGATAGAC
TCTTAAATAAAGCATTTGTCATCTGTCCCTTGAATATAGAATTTGGTTTTAATTTTATAA
TTCTGTGGGCAAACATGACAAAATGGTGTATTAATATATACAGAGAATATAATTTTAAAT
TACATCTTATAGTTTTCCTATTCCAAGGTGAAATAATGCATTTAGTAATTTGGGGGTAGG
GTGGAAAAGTATTATGTTTAACTGGAGTTGACAGATATGAGCCCCTTAGAAATTACGATT
TTCTCTCTTTTAAAAGAAATCTGATTTATAGCTCTTGAAAACCATTGCCACTCGGTTTCC
AATAATGATTAAAATTCTTTTAAAATTAGAATTGCCAATGCCTTGACCTTTGAGAAGGAT
TTCTTAGAAATACGTCCTACATTTAATTAAACTTTTTTCATTAAAATATGGTATTGGATG
TTAACTTTTACACAGTTCTGAGCACCATTAATATCTGGAAAGTGTCTTGAAAGATCAATG
GAAAGTTAAACATTCTAAATTTAACATGAATACATTTCTTTTTGATTCAGAAAATAAAAT
CAGATTTTTCAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-237, - strand, RNAz p=0.739401
               

               
               315-430, + strand, RNAz p=0.86925

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-237, - strand, RNAz p=0.739401
               

               
               315-430, + strand, RNAz p=0.86925

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX649080, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX649080, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1260, gnl|bosTau2|chr11 (45613980-45615282)
               

               
               1-1260, gnl|Hg17|chr2 (65407636-65408931)
               

               
               1-1260, gnl|Mm7|chr11 (20016565-20015399)
               


               
               1443-2356, gnl|bosTau2|chr11 (45615256-45616185)
               

               
               1443-2356, gnl|Hg17|chr2 (65408910-65410036)
               

               
               1443-2356, gnl|Mm7|chr11 (20015422-20014314)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1260, gnl|bosTau2|chr11 (45613980-45615282)
               

               
               1-1260, gnl|Hg17|chr2 (65407636-65408931)
               

               
               1-1260, gnl|Mm7|chr11 (20016565-20015399)
               


               
               1443-2356, gnl|bosTau2|chr11 (45615256-45616185)
               

               
               1443-2356, gnl|Hg17|chr2 (65408910-65410036)
               

               
               1443-2356, gnl|Mm7|chr11 (20015422-20014314)

Expressed library(ies): 48 entry(ies)

More info

Expressed library(ies): 48 entry(ies)

Help | Less info


               
               liv (2.48683)
               

               
               ret (1.80227)
               

               
               fco (1.72929)
               

               
               lin (1.60163)
               

               
               pro (1.5361)
               

               
               cty (1.0408)
               

               
               mgm (0.901713)
               

               
               kid (0.778412)
               

               
               sin (0.69979)
               

               
               mgp (0.692042)
               

               
               mga (0.64082)
               

               
               sug (0.636456)
               

               
               aor (0.585823)
               

               
               rec (0.519211)
               

               
               thg (0.507164)
               

               
               tra (0.492368)
               

               
               cbl (0.45919)
               

               
               spl (0.429553)
               

               
               lnt (0.426925)
               

               
               hea (0.408998)
               

               
               pgl (0.35545)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 48 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (2.48683)
               

               
               ret (1.80227)
               

               
               fco (1.72929)
               

               
               lin (1.60163)
               

               
               pro (1.5361)
               

               
               cty (1.0408)
               

               
               mgm (0.901713)
               

               
               kid (0.778412)
               

               
               sin (0.69979)
               

               
               mgp (0.692042)
               

               
               mga (0.64082)
               

               
               sug (0.636456)
               

               
               aor (0.585823)
               

               
               rec (0.519211)
               

               
               thg (0.507164)
               

               
               tra (0.492368)
               

               
               cbl (0.45919)
               

               
               spl (0.429553)
               

               
               lnt (0.426925)
               

               
               hea (0.408998)
               

               
               pgl (0.35545)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	120-237, - strand, RNAz p=0.739401
	315-430, + strand, RNAz p=0.86925

	1-1260, gnl\|bosTau2\|chr11 (45613980-45615282)
	1-1260, gnl\|Hg17\|chr2 (65407636-65408931)
	1-1260, gnl\|Mm7\|chr11 (20016565-20015399)

	1443-2356, gnl\|bosTau2\|chr11 (45615256-45616185)
	1443-2356, gnl\|Hg17\|chr2 (65408910-65410036)
	1443-2356, gnl\|Mm7\|chr11 (20015422-20014314)

	liv (2.48683)
	ret (1.80227)
	fco (1.72929)
	lin (1.60163)
	pro (1.5361)
	cty (1.0408)
	mgm (0.901713)
	kid (0.778412)
	sin (0.69979)
	mgp (0.692042)
	mga (0.64082)
	sug (0.636456)
	aor (0.585823)
	rec (0.519211)
	thg (0.507164)
	tra (0.492368)
	cbl (0.45919)
	spl (0.429553)
	lnt (0.426925)
	hea (0.408998)
	pgl (0.35545)
	fbs (0.350693)
	vin (0.332557)
	lun (0.300978)
	fat (0.294855)
	nca (0.273748)
	pla (0.267344)
	ebs (0.236602)
	ece (0.229305)
	jca (0.22792)
	nms (0.213858)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	hyp (0.142837)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	bla (0.124347)
	ldo (0.0970026)