Non-Coding RNA Search

Ss1.1-Lym1-jns40_A04.f.5

Sequence:


               
               ATTCTGTAGTTTGTTTTTTTCTACATCTATGGATTGACAGATGGTATTCCTAAATCTCTC
TCATTGTAGGTGCATCAGTTTATAGCCAAATGGTTGTCATTTCAGATTTCAGTCAGGCAG
CGCAAGGCTGCCAGTTGTTATTTCCAAGGAAGATGCTGCCAGCTGTTTCGTATTGATGCT
TCTTGGGAACAAAGGCAGATTTTGGTGTCATCTATTGTTTCACTAGCCTCTTTTTAAAAT
AACTTTTCTGGGAAGCAGCTATCTAGAGAAGGATTCCACTGAGGAGTGATACACATGTAT
GTTTTTGAAGAGTGCATTCAAGGGTGAGTAGGCCACTAAGGGAGAATACCTATGAAAGAA
TCCAGACAGCCTCTTATGTAGGATGCCTTCAGTTCTGTAAGGTGCTTGGCCTACATTTTT
CTTTGAAATTAGTATACAGTTATAAAACCTTTAAATCATTAGTATGATTTATTCTATCAG
GGGACATGTTTTTGTTCTCCATGTTTCTGTTGCTAATGAGTTATAAGTTGTATTTGTATC
ACTGAGATAACAGATTTTCCTAATTCAGTCATAATGTTTTATAAGAAAAGCTGACTTATC
ACTCATTTTATGAGAAGAACAGGTTTACCGTGAAAGGAATGCCTTTATTCAACATTTCAT
TCTTGTTGCTGAGATGCAGAAGAAGCTGCAACAGGAGCAGAAGAAGGAAGACTCCTTCCA
CTGATTTCTCCAGTTCAAAGAATTGTTTGGCTAAAGAAACACAGTCATCATTCAGCTACT
GAATTTGAAAACCTCAACCGTTTCAATGAAAAAAATCTTTAAAAAAAAAAAAATTAACCC
AAACATGATAAATGTCCATATAAAAGTAAAGTTTCAATTTAATTTTTAATGATGGTTTAA
TGCCTTTTTTGAATTACTGGTTTAACCTAAATTTTTTTAAAAATAATGTATTAATACACA
TACCATAATCAAAACTTTGAAATATCATCTTTCTTAAATAGTAGGCAGAACATTAACCAC
ATTTAGCAAACATTTAGCAAACATTTTTACATTCAAACCTGAGTACTAAAATAAATGAAA
TGATTACTTTGAATCACTGTCTGTCAAGGTTCATGATTCATATTTTGAGATGGATTCTTT
TCTTAATGCAATACCTAAACTTTTGATAATTTTTTTAAAATTAATACTTGATCAGTTAAT
GTAAGTCAAAATGCAGACGATCCTTCAAAAGGACACACTGTCTGTCTATGTAGCAACAGC
TCCAAAGTATTTTTGGGCAGTTTGATACCTTTTATATCTGAAGTAGCCTTAACCAGAAAA
GTGAAAAATCTAAAATTGACAAAATGGTATTTTTAAGACTTCAAAATGATAGTAATTTTT
AATAAGTAAAATTGGCCTCAAACTAATCTGTAATCAAATCAAAATGAAACATAACAACAA
AAACTAAATATTTATTTATTTGAAGCTGCCTCTCTTCATTGGTGATTTATTTTTAATTAT
AAAATTTCCAGCAGATCTTTGCTTAAAGCCCTTGATATTTGAAATAGTTGGATACTTGAT
GAGGAAATTTACACTTGCCTCTATAACTATAAATATTTCAGCTTTATAAAATGCATCTAT
TCATGAAGGTGATTTCTCTAATTGGTGATCAGAATGTAAAATTTAATATGGTACTAATAT
CTCACTGGAGTGTATACATGTTTCTGAATAATTTTTAAAAAATAAAACAGTTCATAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTGTAGTTTGTTTTTTTCTACATCTATGGATTGACAGATGGTATTCCTAAATCTCTC
TCATTGTAGGTGCATCAGTTTATAGCCAAATGGTTGTCATTTCAGATTTCAGTCAGGCAG
CGCAAGGCTGCCAGTTGTTATTTCCAAGGAAGATGCTGCCAGCTGTTTCGTATTGATGCT
TCTTGGGAACAAAGGCAGATTTTGGTGTCATCTATTGTTTCACTAGCCTCTTTTTAAAAT
AACTTTTCTGGGAAGCAGCTATCTAGAGAAGGATTCCACTGAGGAGTGATACACATGTAT
GTTTTTGAAGAGTGCATTCAAGGGTGAGTAGGCCACTAAGGGAGAATACCTATGAAAGAA
TCCAGACAGCCTCTTATGTAGGATGCCTTCAGTTCTGTAAGGTGCTTGGCCTACATTTTT
CTTTGAAATTAGTATACAGTTATAAAACCTTTAAATCATTAGTATGATTTATTCTATCAG
GGGACATGTTTTTGTTCTCCATGTTTCTGTTGCTAATGAGTTATAAGTTGTATTTGTATC
ACTGAGATAACAGATTTTCCTAATTCAGTCATAATGTTTTATAAGAAAAGCTGACTTATC
ACTCATTTTATGAGAAGAACAGGTTTACCGTGAAAGGAATGCCTTTATTCAACATTTCAT
TCTTGTTGCTGAGATGCAGAAGAAGCTGCAACAGGAGCAGAAGAAGGAAGACTCCTTCCA
CTGATTTCTCCAGTTCAAAGAATTGTTTGGCTAAAGAAACACAGTCATCATTCAGCTACT
GAATTTGAAAACCTCAACCGTTTCAATGAAAAAAATCTTTAAAAAAAAAAAAATTAACCC
AAACATGATAAATGTCCATATAAAAGTAAAGTTTCAATTTAATTTTTAATGATGGTTTAA
TGCCTTTTTTGAATTACTGGTTTAACCTAAATTTTTTTAAAAATAATGTATTAATACACA
TACCATAATCAAAACTTTGAAATATCATCTTTCTTAAATAGTAGGCAGAACATTAACCAC
ATTTAGCAAACATTTAGCAAACATTTTTACATTCAAACCTGAGTACTAAAATAAATGAAA
TGATTACTTTGAATCACTGTCTGTCAAGGTTCATGATTCATATTTTGAGATGGATTCTTT
TCTTAATGCAATACCTAAACTTTTGATAATTTTTTTAAAATTAATACTTGATCAGTTAAT
GTAAGTCAAAATGCAGACGATCCTTCAAAAGGACACACTGTCTGTCTATGTAGCAACAGC
TCCAAAGTATTTTTGGGCAGTTTGATACCTTTTATATCTGAAGTAGCCTTAACCAGAAAA
GTGAAAAATCTAAAATTGACAAAATGGTATTTTTAAGACTTCAAAATGATAGTAATTTTT
AATAAGTAAAATTGGCCTCAAACTAATCTGTAATCAAATCAAAATGAAACATAACAACAA
AAACTAAATATTTATTTATTTGAAGCTGCCTCTCTTCATTGGTGATTTATTTTTAATTAT
AAAATTTCCAGCAGATCTTTGCTTAAAGCCCTTGATATTTGAAATAGTTGGATACTTGAT
GAGGAAATTTACACTTGCCTCTATAACTATAAATATTTCAGCTTTATAAAATGCATCTAT
TCATGAAGGTGATTTCTCTAATTGGTGATCAGAATGTAAAATTTAATATGGTACTAATAT
CTCACTGGAGTGTATACATGTTTCTGAATAATTTTTAAAAAATAAAACAGTTCATAAGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1191-1310, + strand, RNAz p=0.558558

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1191-1310, + strand, RNAz p=0.558558

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               1112-1342, gnl|bosTau2|chr10 (41234899-41234695)
               

               
               1112-1342, gnl|Hg17|chr2 (178229691-178229907)
               

               
               1112-1342, gnl|Mm7|chr2 (75770981-75771205)
               


               
               1367-1678, gnl|bosTau2|chr12 (6218973-6218658)
               

               
               1367-1678, gnl|Hg17|chr2 (178229971-178230253)
               


               
               1476-1662, gnl|bosTau2|chr10 (41233579-41233394)
               

               
               1476-1662, gnl|Hg17|chr2 (178230062-178230241)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1112-1342, gnl|bosTau2|chr10 (41234899-41234695)
               

               
               1112-1342, gnl|Hg17|chr2 (178229691-178229907)
               

               
               1112-1342, gnl|Mm7|chr2 (75770981-75771205)
               


               
               1367-1678, gnl|bosTau2|chr12 (6218973-6218658)
               

               
               1367-1678, gnl|Hg17|chr2 (178229971-178230253)
               


               
               1476-1662, gnl|bosTau2|chr10 (41233579-41233394)
               

               
               1476-1662, gnl|Hg17|chr2 (178230062-178230241)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               bfe (0.749288)
               

               
               mgp (0.461361)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               ret (0.3862)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.749288)
               

               
               mgp (0.461361)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               ret (0.3862)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	1112-1342, gnl\|bosTau2\|chr10 (41234899-41234695)
	1112-1342, gnl\|Hg17\|chr2 (178229691-178229907)
	1112-1342, gnl\|Mm7\|chr2 (75770981-75771205)

	1367-1678, gnl\|bosTau2\|chr12 (6218973-6218658)
	1367-1678, gnl\|Hg17\|chr2 (178229971-178230253)

	1476-1662, gnl\|bosTau2\|chr10 (41233579-41233394)
	1476-1662, gnl\|Hg17\|chr2 (178230062-178230241)

	bfe (0.749288)
	mgp (0.461361)
	fat (0.442282)
	liv (0.438853)
	ret (0.3862)
	sin (0.349895)
	spc (0.340097)
	fco (0.314416)
	thg (0.253582)
	pgl (0.236967)
	pan (0.23596)
	sag (0.182715)
	mgm (0.180343)
	fbs (0.175346)
	rec (0.17307)
	eye (0.170503)
	mga (0.160205)
	lun (0.150489)
	isp (0.150376)
	lin (0.145603)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)