Ss1.1-Lym1-jns40_F06.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGCTGTGACGTCCCGTCCTGATTGCTACTGGGGCCGCAACTGCCGCACTCAGGTGAAG GCCCACCACGCAATGAAATTCAATCACATCTGTGAACAGACGAGGTTCAAGAACTAAACT AAAGTGGGACACCGTGACGGCTTGGGAGTGTTGGAGGTCAAAGACACGTGTTTCAGAAAA TACTGAATACAAACATTTTTAGGGCATTTTACGGTGCTGGGGCTCCTTGTGTGCGGCACT CTGATAGGACTTTTCTCTTGTGGAGAGACCCTCTTGGTGAGGATCCCACAAACTAGGGGT GCCCAGAGCCCTCCCGCCACAAGAACAGCCCCCAGCCGACCCTTCCCGTTGAGATGGAGA TGCACATTTGCTCTGCACCTTTCCCACAGCCATGGTCAGAGCAGCGTCTCTCTTCCAGAA AAGCGTCATGGTAGAAAAAGGAGTTTGTTGGAAGCGTCATGTGGTTTGAGGAAAGGCAGC ACAAGTTTACAGCCCGTGGGTCGCACAGCGTCCTGGGTGGGCGCCAGAGCGGCTGCTGTG GGTATTTTCATAGATTCGGTGCTTATCTTCTAATAAGACCTAAATATCTCAAACTGTAGC ACAAATGATATCATTTATAACTTACAAATTGACTAAAATTGGGGGTGATGTGATATTTGA AAGAATAAGCATATGTTTCTGCTACTCCGGACCCCAGAGCCTCTGTGGAGCTCAGCCGCC CGCTGCTCCTCAGCACAACTGCAGCTCCGCCAGGCTGTCCTGCCAGGGTTCGGGGCCCAG GGCCGGGGTGCAGTTGACCCTGGTAGTGCCCCCAGCCAACCCAGAGTGTAAGGGGCCTTG GCCTCCCTGCCCCTTCCTCCTGCGTTGGGTTTGCCATGTCATCTGGAATAATACTTGAAA TTTTGTTCTTTGTTTAAAAAAAAAAAAAAAAAAGTTTTTTTTTTGTTTTTTTTTTTGTCA TCTGTTGAAATCACCAGTTAGGTTTGTCGACAAAATTGTAAATTTTTTGCTTCTTCTCAG GAATACAATTTTCAGCTTTGTCTTGCTCTTGATACAGACTCTGAGAAGCAGCGCTCTGTG GAAGAAGGCCGCCTTCCCGGGTTCCAATAAACAAGCCTTGTCTGTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGCTGTGACGTCCCGTCCTGATTGCTACTGGGGCCGCAACTGCCGCACTCAGGTGAAG GCCCACCACGCAATGAAATTCAATCACATCTGTGAACAGACGAGGTTCAAGAACTAAACT AAAGTGGGACACCGTGACGGCTTGGGAGTGTTGGAGGTCAAAGACACGTGTTTCAGAAAA TACTGAATACAAACATTTTTAGGGCATTTTACGGTGCTGGGGCTCCTTGTGTGCGGCACT CTGATAGGACTTTTCTCTTGTGGAGAGACCCTCTTGGTGAGGATCCCACAAACTAGGGGT GCCCAGAGCCCTCCCGCCACAAGAACAGCCCCCAGCCGACCCTTCCCGTTGAGATGGAGA TGCACATTTGCTCTGCACCTTTCCCACAGCCATGGTCAGAGCAGCGTCTCTCTTCCAGAA AAGCGTCATGGTAGAAAAAGGAGTTTGTTGGAAGCGTCATGTGGTTTGAGGAAAGGCAGC ACAAGTTTACAGCCCGTGGGTCGCACAGCGTCCTGGGTGGGCGCCAGAGCGGCTGCTGTG GGTATTTTCATAGATTCGGTGCTTATCTTCTAATAAGACCTAAATATCTCAAACTGTAGC ACAAATGATATCATTTATAACTTACAAATTGACTAAAATTGGGGGTGATGTGATATTTGA AAGAATAAGCATATGTTTCTGCTACTCCGGACCCCAGAGCCTCTGTGGAGCTCAGCCGCC CGCTGCTCCTCAGCACAACTGCAGCTCCGCCAGGCTGTCCTGCCAGGGTTCGGGGCCCAG GGCCGGGGTGCAGTTGACCCTGGTAGTGCCCCCAGCCAACCCAGAGTGTAAGGGGCCTTG GCCTCCCTGCCCCTTCCTCCTGCGTTGGGTTTGCCATGTCATCTGGAATAATACTTGAAA TTTTGTTCTTTGTTTAAAAAAAAAAAAAAAAAAGTTTTTTTTTTGTTTTTTTTTTTGTCA TCTGTTGAAATCACCAGTTAGGTTTGTCGACAAAATTGTAAATTTTTTGCTTCTTCTCAG GAATACAATTTTCAGCTTTGTCTTGCTCTTGATACAGACTCTGAGAAGCAGCGCTCTGTG GAAGAAGGCCGCCTTCCCGGGTTCCAATAAACAAGCCTTGTCTGTTTC |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 75-215, gnl|bosTau2|chr2 (78676424-78676283) | |
| 75-215, gnl|canFam2|chr26 (3325658-3325504) | |
| 75-215, gnl|canFam2|chr27 (40008072-40007964) | |
| 75-215, gnl|dasNov1|scaffold_78310 (6770-6645) | |
| 75-215, gnl|echTel1|scaffold_289752 (13669-13511) | |
| 75-215, gnl|galGal2|chr15 (1485083-1485235) | |
| 75-215, gnl|hg17|chr12 (132028332-132028490) | |
| 75-215, gnl|hg17|chr12 (8755276-8755391) | |
| 75-215, gnl|Hg17|chr12 (132028532-132028397) | |
| 75-215, gnl|loxAfr1|scaffold_28347 (25325-25495) | |
| 75-215, gnl|mm7|chr5 (109337590-109337429) | |
| 75-215, gnl|mm7|chr5 (109337398-109337495) | |
| 75-215, gnl|Mm7|chr5 (109337385-109337520) | |
| 75-215, gnl|monDom2|scaffold_54 (1978572-1978743) | |
| 75-215, gnl|panTro1|chr10 (134889307-134889465) | |
| 75-215, gnl|panTro1|chrUn_random (58347425-58347311) | |
| 75-215, gnl|rheMac2|chr11 (134138681-134138834) | |
| 75-215, gnl|rheMac2|chr4 (43548831-43548727) | |
| 75-215, gnl|rn3|chr12 (46519157-46519303) | |
| 75-215, gnl|rn3|chr4 (159168162-159168101) | |
| 525-681, gnl|bosTau2|chr2 (78676004-78675851) | |
| 525-681, gnl|Hg17|chr12 (132028054-132027868) | |
| 525-681, gnl|Mm7|chr5 (109337877-109338065) | |
| 949-1128, gnl|bosTau2|chr2 (78675544-78675370) | |
| 949-1128, gnl|Hg17|chr12 (132027477-132027290) | |
| 949-1128, gnl|Mm7|chr5 (109338313-109338491) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-215, gnl|bosTau2|chr2 (78676424-78676283) | |
| 75-215, gnl|canFam2|chr26 (3325658-3325504) | |
| 75-215, gnl|canFam2|chr27 (40008072-40007964) | |
| 75-215, gnl|dasNov1|scaffold_78310 (6770-6645) | |
| 75-215, gnl|echTel1|scaffold_289752 (13669-13511) | |
| 75-215, gnl|galGal2|chr15 (1485083-1485235) | |
| 75-215, gnl|hg17|chr12 (132028332-132028490) | |
| 75-215, gnl|hg17|chr12 (8755276-8755391) | |
| 75-215, gnl|Hg17|chr12 (132028532-132028397) | |
| 75-215, gnl|loxAfr1|scaffold_28347 (25325-25495) | |
| 75-215, gnl|mm7|chr5 (109337590-109337429) | |
| 75-215, gnl|mm7|chr5 (109337398-109337495) | |
| 75-215, gnl|Mm7|chr5 (109337385-109337520) | |
| 75-215, gnl|monDom2|scaffold_54 (1978572-1978743) | |
| 75-215, gnl|panTro1|chr10 (134889307-134889465) | |
| 75-215, gnl|panTro1|chrUn_random (58347425-58347311) | |
| 75-215, gnl|rheMac2|chr11 (134138681-134138834) | |
| 75-215, gnl|rheMac2|chr4 (43548831-43548727) | |
| 75-215, gnl|rn3|chr12 (46519157-46519303) | |
| 75-215, gnl|rn3|chr4 (159168162-159168101) | |
| 525-681, gnl|bosTau2|chr2 (78676004-78675851) | |
| 525-681, gnl|Hg17|chr12 (132028054-132027868) | |
| 525-681, gnl|Mm7|chr5 (109337877-109338065) | |
| 949-1128, gnl|bosTau2|chr2 (78675544-78675370) | |
| 949-1128, gnl|Hg17|chr12 (132027477-132027290) | |
| 949-1128, gnl|Mm7|chr5 (109338313-109338491) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fce (0.271592) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cje (0.165235) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| cly (0.120642) | |
| cbl (0.114797) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cje (0.165235) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| cly (0.120642) | |
| cbl (0.114797) | |
| jej (0.0989218) |