Non-Coding RNA Search

Ss1.1-Lym1-jns40_G05.f.5

Sequence:


               
               CCTCCCGGAAGCAGCACTTCAGAAGATTGGACCGGGCACCGGGTGCACTNACCCTCTATA
GCTTCGCCCCAGGGAGCCTGCGGGGAGAGGACGCAGGTCGTAGGCGCCCCCCCCCTCCAA
GAGGGAGAGGAAGAGACAGCCCCTTTCGAGCTTCCACGCACCAGCCACTCGGGGGAGGGG
CCAAGAACCCACAGCGGCCAGCACCCGGCACCCTCGCCCCCTCCCCCCGGGCCCGGAGCT
TCCAGTCCAGGTCCGCGACACCAGGAAGAAGGCGCCTGAGCTACCCTCCCGACGAGACAG
CCGCAGTAGGAGGTGGGGGCGAGGAGCGGGCTGGACTCGTCCGCCGCCCAGGCGCTGGAG
CCCCCGCGGAAAGGCGTGCGCCGGCGGTGGAGACTCGCGCTCCCTCCAGCCCCTGGGGCA
GAACTTTCTCGCCCCCCCTCCCTCCCCCGCAGCCAGACTCCCTCCCCAGCCGGCCAGCCT
CCGGGAGGAGAAGGCGCCGCGGAGACAGCCCGGGCGGGGGCCTACCTTCCCCAGGGCCGG
CATCATGTCGGCGGCGCAGGTGTCCTCGTCCCGGAGGCAGTCGTGCTACCTGTGTGACCT
GCCCCGCATGCCCTGGGCCATGATCTGGGACTTCACGGAGCCCGTGTGCCGCGGCTGCGT
CAACTACGAGGGCGCCGACCGCGTCGAGTTCGTCATCGAGACCGCGCGGCAGCTCAAGCG
GGCGCACGGCTGCTTCCCGGAGGGCCGCTCCCCGCCCGGCGCCGCGGCTCCGGCCGCCGC
TAAGCCGCCGCCGCTCTCCGCCAAGGACCTTCTCCTGCAGCAGCAGCAGCAGCTCGGCCA
CGGCGGCCCCGAGGCCACCGCGCGCGCCCCGCAGGCCCTGGAGCGCTACCCTCTGGCAGC
CGCCGCAGCCGAGCGGCCCCCGCGCCTCGGCTCCGATTTCAGCGGTAGCCGCCCGGCGGC
CGGTCTGGCCCAGCCGCCAACGCCGCAGCCGCCGCCCGTGAACGGCATCCTGGTGCCCAA
CGGCTTCTCCAAGCTGGAGGAGCCGCCGGAGCTGAACCGCCAGAGCCCTAACCCGCGGCG
CGGCCACGCCGTGCCTCCCACCCTGGTGCCGCTCATGAACGGCTCGACCACGCCGCTGCC
CGCCGCTCTTGGCCTGGGCGGTCGCGCCGCCGCCTCACTGGCCGCCGTGTCCGGGGCCGC
GGCTGCCGGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCCGGAAGCAGCACTTCAGAAGATTGGACCGGGCACCGGGTGCACTNACCCTCTATA
GCTTCGCCCCAGGGAGCCTGCGGGGAGAGGACGCAGGTCGTAGGCGCCCCCCCCCTCCAA
GAGGGAGAGGAAGAGACAGCCCCTTTCGAGCTTCCACGCACCAGCCACTCGGGGGAGGGG
CCAAGAACCCACAGCGGCCAGCACCCGGCACCCTCGCCCCCTCCCCCCGGGCCCGGAGCT
TCCAGTCCAGGTCCGCGACACCAGGAAGAAGGCGCCTGAGCTACCCTCCCGACGAGACAG
CCGCAGTAGGAGGTGGGGGCGAGGAGCGGGCTGGACTCGTCCGCCGCCCAGGCGCTGGAG
CCCCCGCGGAAAGGCGTGCGCCGGCGGTGGAGACTCGCGCTCCCTCCAGCCCCTGGGGCA
GAACTTTCTCGCCCCCCCTCCCTCCCCCGCAGCCAGACTCCCTCCCCAGCCGGCCAGCCT
CCGGGAGGAGAAGGCGCCGCGGAGACAGCCCGGGCGGGGGCCTACCTTCCCCAGGGCCGG
CATCATGTCGGCGGCGCAGGTGTCCTCGTCCCGGAGGCAGTCGTGCTACCTGTGTGACCT
GCCCCGCATGCCCTGGGCCATGATCTGGGACTTCACGGAGCCCGTGTGCCGCGGCTGCGT
CAACTACGAGGGCGCCGACCGCGTCGAGTTCGTCATCGAGACCGCGCGGCAGCTCAAGCG
GGCGCACGGCTGCTTCCCGGAGGGCCGCTCCCCGCCCGGCGCCGCGGCTCCGGCCGCCGC
TAAGCCGCCGCCGCTCTCCGCCAAGGACCTTCTCCTGCAGCAGCAGCAGCAGCTCGGCCA
CGGCGGCCCCGAGGCCACCGCGCGCGCCCCGCAGGCCCTGGAGCGCTACCCTCTGGCAGC
CGCCGCAGCCGAGCGGCCCCCGCGCCTCGGCTCCGATTTCAGCGGTAGCCGCCCGGCGGC
CGGTCTGGCCCAGCCGCCAACGCCGCAGCCGCCGCCCGTGAACGGCATCCTGGTGCCCAA
CGGCTTCTCCAAGCTGGAGGAGCCGCCGGAGCTGAACCGCCAGAGCCCTAACCCGCGGCG
CGGCCACGCCGTGCCTCCCACCCTGGTGCCGCTCATGAACGGCTCGACCACGCCGCTGCC
CGCCGCTCTTGGCCTGGGCGGTCGCGCCGCCGCCTCACTGGCCGCCGTGTCCGGGGCCGC
GGCTGCCGGGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47209107|emb|CAF90065.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47209107|emb|CAF90065.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               183-845, gnl|bosTau2|chr10 (61708665-61707997)
               

               
               183-845, gnl|Hg17|chr14 (76564255-76563544)
               

               
               183-845, gnl|Mm7|chr12 (84886869-84886209)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-845, gnl|bosTau2|chr10 (61708665-61707997)
               

               
               183-845, gnl|Hg17|chr14 (76564255-76563544)
               

               
               183-845, gnl|Mm7|chr12 (84886869-84886209)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	183-845, gnl\|bosTau2\|chr10 (61708665-61707997)
	183-845, gnl\|Hg17\|chr14 (76564255-76563544)
	183-845, gnl\|Mm7\|chr12 (84886869-84886209)