Ss1.1-Lym1-jns41_A12.f.5
|
AAGAAAAATATTTAATGTTGAACAAAAACCTTGGAGTTGGAGTAGAATGTAGCTCGAGGA
AATTTGCAACTTCCAATATCTATTGTCTTCCTAGTTCAGAAGATGCTTAAATATTAAGCA
TGACAAAAAATTGTATTAACACTACTCAAAGCAGAAGTGCTGCAGGGCTTTAAAAATCTC
TTCCAACCAATTATTTTGAATCGTACTTATAATATACAGAATCAAATAGTACTTTGGAAA
CCATTTTAGGATTCATAATTGTTGTGTAGGTTAGACATAGAATCACTATAATATTGTGAA
AAATTACAGTGCCTGGAGTAAGAATAAAACAATATAAACACACCAAAAAAATACCTAGTA
ATATATTTAAAGGGGAATTGAACTGCTTTTTTGAAACTTGGAAATCTAAAATCAGTAACT
GTAATTATTTGAATGACTTAAAAGTATATCTTAAAAAAATGCTGAAAATAGCCTTTCTAT
GATTATTGAAAATAAGACTGAAACCAAGAGTTAAAATGATAGAAAGTTAACCAAATTTTA
ACAGGAAACATTTTCTCTGTTAGAAAAGGTGATGAAATCCTAAGTATTTAGAATTCCCAC
CCTGGCACAGCACTGAACCTGGGAAAGGATTTAGACTTTGAATTTATCTTTGATAACAGG
GATTGATTTTTAAAGAGTATTAAATCACACATGAATTTAAGATCTGTTCGCTGTTGCTGA
TTTGATTCTTGATCAATAATTTGTATTTCAGAAAGCATTTCACCTTGCTTTAATTTTAGC
AAAACGGGTTATGACGAATGACTTTCCCAATATTTTGTTTGAACTGATGAACGATTAATT
AACTTGGATGAGTTTGGGGAAGTTAAAGGGAAGAACATACTGTTACCACTTTTTTTTTTC
TTGTTTGTGAGAAGAGCTTAGAAACTGGAAATGCTGGGTTTGGGAGAAGGGAAATTACTC
AATAAGGGACTGATATCTGTGCAGTAACTTGGTGTGCGGGCTTCTTCTTGAATCTTTAAT
TAAAATCTGGGATGATGTATCCCTGCTAGATAGTCACACTTGAACTATAGTTACTGTAAA
AAAAAATTCTTAATACTGTTATTCTTTGCACTTTTTTCTTAATCATTGTGTGTGTGTGTG
TGTGTGTATGCCTATATATACATACACACCTATATATATATGTTGCTTCCATTGCTTTGT
ACAGATGTGGGCCACCACTGCAACAAAACACATTCTTTTTGCTCTAGAGTATTTATAAAG
AAAATATTTAAATGTTATGTATATGGTGGTAAACAGGAAAAATCATCTGGTGTTATTATA
AGCAAGAATGAAGGTTTTTGTAAAGAATGTTCAGTGTTTCGCAATGTACACTTTGAAGCA
AGGTCTCCCTGAAGTTGTGTGTATGTGAGTGTTCTCATTCTTCCCAACTTGCCTTCGAAG
AGTAAAAAACTGTTCTTATCAAGTAGACTACTGTTCAGCTTCTGCTGGTCCTGGCCCGCT
GTTGATCCTCTAAGGATGTGCCCTTAGACTTTTTCAATATGTGATCTTTCCCCTCCTTTT
GGAATGATGATTTTCAATGTGTGAGTGCATGTATACTCAGATATTTGCACCCCCACCCAC
TCCCATCTCCCAGAAGCTAGAACACTGCCAACTAATCTGTCGTTTAGGTCCTTTAGAAAC
ACGTAATTAACACTTAAGGTTGGGTGCTGCTAATTCTTTGCGAAAATCCAAATATTGTTA
AGGGACCAGGGAGATGCCACTACCCCCTGATTTTTCATCACAAAATATACATGTTTATGT
AAACAGATCTTTCCATATTCATAGTGACTTTTCAAGTATTTGAGCCTAAAGATTTTGATC
CTACATTTTTATACCTGTTGAAATTGTTCAACTGTTATTATTACATGTCGGCCATCAAAT
AAAGTTGTACTTTAAAAATTTCCTACAATTACGTACATTTCTAAGTCAGACACTTGTGAT
TTTTGCTTTAATTACATGGAAGTATCTTGCCTCCTTGATATTTGTACTGATTCTTTTTTT
TCTGGAGTGGAGGTATAATTGTATTACATCTTGGAGCTGAGATACAGATGAATGGTGCAA
AAAGTCAGAAGTTAAGGGAATAATATTTCTTTGGTCATAAAGACTGATTGATAATCCTTG
CCTATATTTTCCTGATAGCATGTGGCAAATGCTTCTGGAATAACAAGATGAGAACAGATA
AAGGATTGTGTAGTATTTGGGATTTAGAGAGAAATATTTTAATTTTCAAATGTAGTTGCA
AATTAGAGTATATTCATATTTGTACTTTCTGTTAAAATGCACGATTGCAGGATTGTTACT
TAGATTTTTGTGTTTATTCTTGATGAAGAGCTTTGTTTGTTACGGTTTTTAAGTTTGCAC
TCAAATCTTAAGAAATAAATCCACCCATGTTATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGAAAAATATTTAATGTTGAACAAAAACCTTGGAGTTGGAGTAGAATGTAGCTCGAGGA
AATTTGCAACTTCCAATATCTATTGTCTTCCTAGTTCAGAAGATGCTTAAATATTAAGCA
TGACAAAAAATTGTATTAACACTACTCAAAGCAGAAGTGCTGCAGGGCTTTAAAAATCTC
TTCCAACCAATTATTTTGAATCGTACTTATAATATACAGAATCAAATAGTACTTTGGAAA
CCATTTTAGGATTCATAATTGTTGTGTAGGTTAGACATAGAATCACTATAATATTGTGAA
AAATTACAGTGCCTGGAGTAAGAATAAAACAATATAAACACACCAAAAAAATACCTAGTA
ATATATTTAAAGGGGAATTGAACTGCTTTTTTGAAACTTGGAAATCTAAAATCAGTAACT
GTAATTATTTGAATGACTTAAAAGTATATCTTAAAAAAATGCTGAAAATAGCCTTTCTAT
GATTATTGAAAATAAGACTGAAACCAAGAGTTAAAATGATAGAAAGTTAACCAAATTTTA
ACAGGAAACATTTTCTCTGTTAGAAAAGGTGATGAAATCCTAAGTATTTAGAATTCCCAC
CCTGGCACAGCACTGAACCTGGGAAAGGATTTAGACTTTGAATTTATCTTTGATAACAGG
GATTGATTTTTAAAGAGTATTAAATCACACATGAATTTAAGATCTGTTCGCTGTTGCTGA
TTTGATTCTTGATCAATAATTTGTATTTCAGAAAGCATTTCACCTTGCTTTAATTTTAGC
AAAACGGGTTATGACGAATGACTTTCCCAATATTTTGTTTGAACTGATGAACGATTAATT
AACTTGGATGAGTTTGGGGAAGTTAAAGGGAAGAACATACTGTTACCACTTTTTTTTTTC
TTGTTTGTGAGAAGAGCTTAGAAACTGGAAATGCTGGGTTTGGGAGAAGGGAAATTACTC
AATAAGGGACTGATATCTGTGCAGTAACTTGGTGTGCGGGCTTCTTCTTGAATCTTTAAT
TAAAATCTGGGATGATGTATCCCTGCTAGATAGTCACACTTGAACTATAGTTACTGTAAA
AAAAAATTCTTAATACTGTTATTCTTTGCACTTTTTTCTTAATCATTGTGTGTGTGTGTG
TGTGTGTATGCCTATATATACATACACACCTATATATATATGTTGCTTCCATTGCTTTGT
ACAGATGTGGGCCACCACTGCAACAAAACACATTCTTTTTGCTCTAGAGTATTTATAAAG
AAAATATTTAAATGTTATGTATATGGTGGTAAACAGGAAAAATCATCTGGTGTTATTATA
AGCAAGAATGAAGGTTTTTGTAAAGAATGTTCAGTGTTTCGCAATGTACACTTTGAAGCA
AGGTCTCCCTGAAGTTGTGTGTATGTGAGTGTTCTCATTCTTCCCAACTTGCCTTCGAAG
AGTAAAAAACTGTTCTTATCAAGTAGACTACTGTTCAGCTTCTGCTGGTCCTGGCCCGCT
GTTGATCCTCTAAGGATGTGCCCTTAGACTTTTTCAATATGTGATCTTTCCCCTCCTTTT
GGAATGATGATTTTCAATGTGTGAGTGCATGTATACTCAGATATTTGCACCCCCACCCAC
TCCCATCTCCCAGAAGCTAGAACACTGCCAACTAATCTGTCGTTTAGGTCCTTTAGAAAC
ACGTAATTAACACTTAAGGTTGGGTGCTGCTAATTCTTTGCGAAAATCCAAATATTGTTA
AGGGACCAGGGAGATGCCACTACCCCCTGATTTTTCATCACAAAATATACATGTTTATGT
AAACAGATCTTTCCATATTCATAGTGACTTTTCAAGTATTTGAGCCTAAAGATTTTGATC
CTACATTTTTATACCTGTTGAAATTGTTCAACTGTTATTATTACATGTCGGCCATCAAAT
AAAGTTGTACTTTAAAAATTTCCTACAATTACGTACATTTCTAAGTCAGACACTTGTGAT
TTTTGCTTTAATTACATGGAAGTATCTTGCCTCCTTGATATTTGTACTGATTCTTTTTTT
TCTGGAGTGGAGGTATAATTGTATTACATCTTGGAGCTGAGATACAGATGAATGGTGCAA
AAAGTCAGAAGTTAAGGGAATAATATTTCTTTGGTCATAAAGACTGATTGATAATCCTTG
CCTATATTTTCCTGATAGCATGTGGCAAATGCTTCTGGAATAACAAGATGAGAACAGATA
AAGGATTGTGTAGTATTTGGGATTTAGAGAGAAATATTTTAATTTTCAAATGTAGTTGCA
AATTAGAGTATATTCATATTTGTACTTTCTGTTAAAATGCACGATTGCAGGATTGTTACT
TAGATTTTTGTGTTTATTCTTGATGAAGAGCTTTGTTTGTTACGGTTTTTAAGTTTGCAC
TCAAATCTTAAGAAATAAATCCACCCATGTTATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1252-1399, - strand, RNAmicro p=0.905269 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
1252-1399, - strand, RNAmicro p=0.905269 |
|
1182-1261, DB794189 full-length enriched swine cDNA library, adult immature
(dbj|DB794189.1|), blast E-value=4e-36, identity=100% |
|
1182-1261, CF--04-R-E08 Bos taurus CF-24-HW cDNA library Bos taurus cDNA clone
(gb|CF930535.1|), blast E-value=1e-26, identity=95% |
|
1182-1261, 4089995 BARC 10BOV Bos taurus cDNA clone 10BOV27_O10 3', mRNA
(gb|CK950778.1|), blast E-value=1e-26, identity=95% |
|
1182-1261, LM_SM5_005984 Locusta migratoria solitarious phase's midgut cDNA
(gb|CO865050.1|), blast E-value=9e-34, identity=98.75% |
|
1182-1261, Hw_Fat_18_050801_B09 Bos taurus CF-24-HW fat cDNA library Bos
(gb|DV775349.1|), blast E-value=1e-26, identity=95% |
|
1182-1261, 001112BMUA007211HT BMUA Bos taurus cDNA, mRNA sequence
(gb|DY122651.1|), blast E-value=1e-26, identity=95% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
1182-1261, DB794189 full-length enriched swine cDNA library, adult immature
(dbj|DB794189.1|), blast E-value=4e-36, identity=100% |
|
1182-1261, CF--04-R-E08 Bos taurus CF-24-HW cDNA library Bos taurus cDNA clone
(gb|CF930535.1|), blast E-value=1e-26, identity=95% |
|
1182-1261, 4089995 BARC 10BOV Bos taurus cDNA clone 10BOV27_O10 3', mRNA
(gb|CK950778.1|), blast E-value=1e-26, identity=95% |
|
1182-1261, LM_SM5_005984 Locusta migratoria solitarious phase's midgut cDNA
(gb|CO865050.1|), blast E-value=9e-34, identity=98.75% |
|
1182-1261, Hw_Fat_18_050801_B09 Bos taurus CF-24-HW fat cDNA library Bos
(gb|DV775349.1|), blast E-value=1e-26, identity=95% |
|
1182-1261, 001112BMUA007211HT BMUA Bos taurus cDNA, mRNA sequence
(gb|DY122651.1|), blast E-value=1e-26, identity=95% |
|
1-1450, gnl|bosTau2|chrX (17166689-17168134) |
|
1-1450, gnl|Hg17|chrX (108693115-108691688) |
|
1-1450, gnl|Mm7|chrX (136984718-136983285) |
| |
|
1568-2014, gnl|bosTau2|chrX (17193068-17193517) |
|
1568-2014, gnl|canFam2|chrX (85934183-85934474) |
|
1568-2014, gnl|canFam2|chrX (85933691-85934515) |
|
1568-2014, gnl|echTel1|scaffold_42078 (1104-1387) |
|
1568-2014, gnl|echTel1|scaffold_42078 (652-1428) |
|
1568-2014, gnl|hg17|chr19 (53082039-53082328) |
|
1568-2014, gnl|hg17|chrX (108690713-108691496) |
|
1568-2014, gnl|Hg17|chrX (108691573-108691187) |
|
1568-2014, gnl|loxAfr1|scaffold_122008 (1157-1436) |
|
1568-2014, gnl|loxAfr1|scaffold_122008 (692-1485) |
|
1568-2014, gnl|mm7|chrX (136982778-136983044) |
|
1568-2014, gnl|mm7|chrX (136982314-136983084) |
|
1568-2014, gnl|monDom2|scaffold_131 (326682-326992) |
|
1568-2014, gnl|monDom2|scaffold_131 (326233-327039) |
|
1568-2014, gnl|oryCun1|scaffold_190794 (12159-12430) |
|
1568-2014, gnl|oryCun1|scaffold_190794 (11687-12479) |
|
1568-2014, gnl|panTro1|chr20_random (23594784-23594493) |
|
1568-2014, gnl|panTro1|chrX (112385598-112386381) |
|
1568-2014, gnl|rheMac2|chr19 (54212678-54212937) |
|
1568-2014, gnl|rheMac2|chrX (108360264-108361042) |
|
1568-2014, gnl|rn3|chrX (36285174-36284902) |
|
1568-2014, gnl|rn3|chrX (36285644-36284862) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1450, gnl|bosTau2|chrX (17166689-17168134) |
|
1-1450, gnl|Hg17|chrX (108693115-108691688) |
|
1-1450, gnl|Mm7|chrX (136984718-136983285) |
| |
|
1568-2014, gnl|bosTau2|chrX (17193068-17193517) |
|
1568-2014, gnl|canFam2|chrX (85934183-85934474) |
|
1568-2014, gnl|canFam2|chrX (85933691-85934515) |
|
1568-2014, gnl|echTel1|scaffold_42078 (1104-1387) |
|
1568-2014, gnl|echTel1|scaffold_42078 (652-1428) |
|
1568-2014, gnl|hg17|chr19 (53082039-53082328) |
|
1568-2014, gnl|hg17|chrX (108690713-108691496) |
|
1568-2014, gnl|Hg17|chrX (108691573-108691187) |
|
1568-2014, gnl|loxAfr1|scaffold_122008 (1157-1436) |
|
1568-2014, gnl|loxAfr1|scaffold_122008 (692-1485) |
|
1568-2014, gnl|mm7|chrX (136982778-136983044) |
|
1568-2014, gnl|mm7|chrX (136982314-136983084) |
|
1568-2014, gnl|monDom2|scaffold_131 (326682-326992) |
|
1568-2014, gnl|monDom2|scaffold_131 (326233-327039) |
|
1568-2014, gnl|oryCun1|scaffold_190794 (12159-12430) |
|
1568-2014, gnl|oryCun1|scaffold_190794 (11687-12479) |
|
1568-2014, gnl|panTro1|chr20_random (23594784-23594493) |
|
1568-2014, gnl|panTro1|chrX (112385598-112386381) |
|
1568-2014, gnl|rheMac2|chr19 (54212678-54212937) |
|
1568-2014, gnl|rheMac2|chrX (108360264-108361042) |
|
1568-2014, gnl|rn3|chrX (36285174-36284902) |
|
1568-2014, gnl|rn3|chrX (36285644-36284862) |
|
cbl (1.72196) |
|
liv (1.02399) |
|
cty (0.62448) |
|
fli (0.608643) |
|
tra (0.492368) |
|
fco (0.471624) |
|
lin (0.436808) |
|
spl (0.429553) |
|
cmu (0.372787) |
|
bfe (0.299715) |
|
sug (0.254582) |
|
ebs (0.236602) |
|
med (0.232504) |
|
mgp (0.230681) |
|
mas (0.210305) |
|
jej (0.197844) |
|
fty (0.17584) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
tbr (0.154178) |
|
isp (0.150376) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
kid (0.129735) |
|
ova (0.129132) |
|
thg (0.126791) |
|
spc (0.113366) |
|
cbl (1.72196) |
|
liv (1.02399) |
|
cty (0.62448) |
|
fli (0.608643) |
|
tra (0.492368) |
|
fco (0.471624) |
|
lin (0.436808) |
|
spl (0.429553) |
|
cmu (0.372787) |
|
bfe (0.299715) |
|
sug (0.254582) |
|
ebs (0.236602) |
|
med (0.232504) |
|
mgp (0.230681) |
|
mas (0.210305) |
|
jej (0.197844) |
|
fty (0.17584) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
tbr (0.154178) |
|
isp (0.150376) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
kid (0.129735) |
|
ova (0.129132) |
|
thg (0.126791) |
|
spc (0.113366) |
