Non-Coding RNA Search

Ss1.1-Lym1-jns41_C08.f.5

Sequence:


               
               CAAAAGATTTATATACAGGTGTTGAATCCAGAAATTAAGGTTAAAAGCATAAATATCGAT
AATTTCAACTAGATTCAGAATGGTTTCAGAAAGATATGATACAACAATTTATATTTAAAC
AAAGCAGAAGAGCATCAATATTTTGGTTTGCTTGAGATATACATAAGGTGCAACAACTTT
TTCTCTTGAGGATGCTTGTGGGACAAATGTTAGTGTAGATGGTGTTTGCTGGCAGATTAA
GGTACACACCATAGCAATATGATTTTCCAAAATAAAAAAGAATTAGATAAATGAAATGGA
AATGATAAATGCGGGGGGGGGGCGCACACTACATGTTGGTCTGAAATATTTGTGCTAACA
AATGTTGTTACCTGAAAATACCAACACCCCTCTCCAGCGGATTCAGGGCATGAGAAAAGC
ACTATCATTGAAATCAAGACTTCACTCAAAGAAACGACAAGGCAAGTGTCTAAAGGACTA
TAAAGCTTTGCAGGATTTCTGCTACTCTCAGTGCCTAACTGCTTAAAAATTAAGCATTTC
TACAAAAGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAGATTTATATACAGGTGTTGAATCCAGAAATTAAGGTTAAAAGCATAAATATCGAT
AATTTCAACTAGATTCAGAATGGTTTCAGAAAGATATGATACAACAATTTATATTTAAAC
AAAGCAGAAGAGCATCAATATTTTGGTTTGCTTGAGATATACATAAGGTGCAACAACTTT
TTCTCTTGAGGATGCTTGTGGGACAAATGTTAGTGTAGATGGTGTTTGCTGGCAGATTAA
GGTACACACCATAGCAATATGATTTTCCAAAATAAAAAAGAATTAGATAAATGAAATGGA
AATGATAAATGCGGGGGGGGGGCGCACACTACATGTTGGTCTGAAATATTTGTGCTAACA
AATGTTGTTACCTGAAAATACCAACACCCCTCTCCAGCGGATTCAGGGCATGAGAAAAGC
ACTATCATTGAAATCAAGACTTCACTCAAAGAAACGACAAGGCAAGTGTCTAAAGGACTA
TAAAGCTTTGCAGGATTTCTGCTACTCTCAGTGCCTAACTGCTTAAAAATTAAGCATTTC
TACAAAAGGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               278-396, - strand, RNAz p=0.616013

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-396, - strand, RNAz p=0.616013

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr1 (29247708-29247166)
               

               
               1-552, gnl|Hg17|chr3 (109009950-109009406)
               

               
               1-552, gnl|Mm7|chr16 (49956514-49957027)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr1 (29247708-29247166)
               

               
               1-552, gnl|Hg17|chr3 (109009950-109009406)
               

               
               1-552, gnl|Mm7|chr16 (49956514-49957027)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-552, gnl\|bosTau2\|chr1 (29247708-29247166)
	1-552, gnl\|Hg17\|chr3 (109009950-109009406)
	1-552, gnl\|Mm7\|chr16 (49956514-49957027)