Ss1.1-Lym1-jns43_A10.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGTGCTGTCAGTGTGTGCGATCCCTGGCTCTCGGCCCCTCAGTCCTTACCCAAGATGA TTCCAGCAGTGGTCTTGCTCTTACTCCTTTTGGTTGAACAAGCAGCGGCCCTGGGAGAAC CTCAGCTCTGCTATATCCTGGATGCGATCCTCTTTCTGTATGGCATTGTCCTCACCCTCC TCTACTGTCGACTCAAGCTCCAGGTGCGAAAGGCAGCTATAGACAGCTATGAGAAATCAG ACGGCGTTTACACGGGCCTGAGCACCCGGAACCAGGAGACTTATGAGACCCTGAAGCATG AGAAACCACCACAGTAAATTTAGAACAGATGCCCTTTGTCACTTCCTTCTTCCACTTTCC TCTTAGTCCCCGTGGTTGGCATCACATATGCCTCCCTGCCACTAATGCCAGCTGACCCTG TCCCTGTAATGATGCTATGCCCCCATTAATAGGCACCAGTGGTTCCTCCTCCCTGTCAAA GGCCTCAGATGCTCTTCATTAATGTTTGTATTCTTGTCTCACCCCCTTATGGAACCTTCT AAATCTTCCCCATCCCCAACTCCCTCTAAACAATGGGAAGGGACTACCATCAATAAAGCC GCCACAGACTGGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGTGCTGTCAGTGTGTGCGATCCCTGGCTCTCGGCCCCTCAGTCCTTACCCAAGATGA TTCCAGCAGTGGTCTTGCTCTTACTCCTTTTGGTTGAACAAGCAGCGGCCCTGGGAGAAC CTCAGCTCTGCTATATCCTGGATGCGATCCTCTTTCTGTATGGCATTGTCCTCACCCTCC TCTACTGTCGACTCAAGCTCCAGGTGCGAAAGGCAGCTATAGACAGCTATGAGAAATCAG ACGGCGTTTACACGGGCCTGAGCACCCGGAACCAGGAGACTTATGAGACCCTGAAGCATG AGAAACCACCACAGTAAATTTAGAACAGATGCCCTTTGTCACTTCCTTCTTCCACTTTCC TCTTAGTCCCCGTGGTTGGCATCACATATGCCTCCCTGCCACTAATGCCAGCTGACCCTG TCCCTGTAATGATGCTATGCCCCCATTAATAGGCACCAGTGGTTCCTCCTCCCTGTCAAA GGCCTCAGATGCTCTTCATTAATGTTTGTATTCTTGTCTCACCCCCTTATGGAACCTTCT AAATCTTCCCCATCCCCAACTCCCTCTAAACAATGGGAAGGGACTACCATCAATAAAGCC GCCACAGACTGGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 496-613, - strand, RNAz p=0.832071 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 496-613, - strand, RNAz p=0.832071 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-105, gnl|bosTau2|chr3 (7586310-7586206) | |
| 1-105, gnl|canFam2|chr38 (24270735-24270262) | |
| 1-105, gnl|echTel1|scaffold_311345 (56009-55548) | |
| 1-105, gnl|hg17|chr1 (157997975-157998458) | |
| 1-105, gnl|loxAfr1|scaffold_33740 (5364-4783) | |
| 1-105, gnl|mm7|chr1 (171204574-171204084) | |
| 1-105, gnl|Mm7|chr1 (171204400-171204290) | |
| 1-105, gnl|monDom2|scaffold_0 (28590670-28590189) | |
| 1-105, gnl|oryCun1|scaffold_179946 (39096-39590) | |
| 1-105, gnl|panTro1|chr1_random (27664731-27665214) | |
| 1-105, gnl|rheMac2|chr1 (139825597-139826077) | |
| 1-105, gnl|rn3|chr13 (87312927-87312486) | |
| 254-613, gnl|bosTau2|chr3 (7583446-7583089) | |
| 254-613, gnl|canFam2|chr38 (24267693-24267493) | |
| 254-613, gnl|echTel1|scaffold_311345 (52979-52632) | |
| 254-613, gnl|hg17|chr1 (158001659-158002004) | |
| 254-613, gnl|Hg17|chr1 (158001743-158002108) | |
| 254-613, gnl|mm7|chr1 (171200092-171199777) | |
| 254-613, gnl|Mm7|chr1 (171200021-171199670) | |
| 254-613, gnl|monDom2|scaffold_0 (28564808-28564412) | |
| 254-613, gnl|oryCun1|scaffold_203549 (6977-7273) | |
| 254-613, gnl|panTro1|chr1_random (27668415-27668760) | |
| 254-613, gnl|rheMac2|chr1 (139829199-139829532) | |
| 254-613, gnl|rn3|chr13 (87308772-87308460) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-105, gnl|bosTau2|chr3 (7586310-7586206) | |
| 1-105, gnl|canFam2|chr38 (24270735-24270262) | |
| 1-105, gnl|echTel1|scaffold_311345 (56009-55548) | |
| 1-105, gnl|hg17|chr1 (157997975-157998458) | |
| 1-105, gnl|loxAfr1|scaffold_33740 (5364-4783) | |
| 1-105, gnl|mm7|chr1 (171204574-171204084) | |
| 1-105, gnl|Mm7|chr1 (171204400-171204290) | |
| 1-105, gnl|monDom2|scaffold_0 (28590670-28590189) | |
| 1-105, gnl|oryCun1|scaffold_179946 (39096-39590) | |
| 1-105, gnl|panTro1|chr1_random (27664731-27665214) | |
| 1-105, gnl|rheMac2|chr1 (139825597-139826077) | |
| 1-105, gnl|rn3|chr13 (87312927-87312486) | |
| 254-613, gnl|bosTau2|chr3 (7583446-7583089) | |
| 254-613, gnl|canFam2|chr38 (24267693-24267493) | |
| 254-613, gnl|echTel1|scaffold_311345 (52979-52632) | |
| 254-613, gnl|hg17|chr1 (158001659-158002004) | |
| 254-613, gnl|Hg17|chr1 (158001743-158002108) | |
| 254-613, gnl|mm7|chr1 (171200092-171199777) | |
| 254-613, gnl|Mm7|chr1 (171200021-171199670) | |
| 254-613, gnl|monDom2|scaffold_0 (28564808-28564412) | |
| 254-613, gnl|oryCun1|scaffold_203549 (6977-7273) | |
| 254-613, gnl|panTro1|chr1_random (27668415-27668760) | |
| 254-613, gnl|rheMac2|chr1 (139829199-139829532) | |
| 254-613, gnl|rn3|chr13 (87308772-87308460) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| csp (0.805932) | |
| cly (0.723851) | |
| col (0.390016) | |
| cli (0.305623) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| nca (0.273748) | |
| cbl (0.229595) | |
| jca (0.22792) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.805932) | |
| cly (0.723851) | |
| col (0.390016) | |
| cli (0.305623) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| nca (0.273748) | |
| cbl (0.229595) | |
| jca (0.22792) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| jej (0.0989218) |