Ss1.1-Lym1-jns43_E07.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTAATTTGGGTGGTCTCCGTGGTCCTGGCCGTCCCGGAAGCCTTGGGTTTTGACATGAT TACCACTGACTATAAAGGAAATCGCCTGCGAATCTGCTTGCTCCATCCTACTCAGAAAAC AGCCTTCATGCAGTTTTACAAGACAGCTAAAGATTGGTGGCTATTCAGTTTCTATTTCTG CTTGCCACTAGCCATCACTGCATTTTTTTATACCCTGATGACCTGTGAAATGCTGAGAAA GAAGAGTGGCATGCAAATTGCTTTAAATGATCACTTAAAGCAGAGACGGGAAGTGGCCAA AACCGTATTTTGCCTGGTCCTTGTCTTTGCCCTGTGTTGGCTTCCCCTTCATCTCAGCAG GATTTTGAAGCTCACTCTGTATGATCAAAATGATTCGAATAGATGTGAACTTTTGAGCTT TTTGTTGGTATTGGATTACATTGGCATCAACATGGCGTCCCTGAATTCCTGTATTAATCC AATAGCTCTGTATTTGGTGAGCAAAAGATTCAAAAACTGCTTTAAGTCATGCTTATGCTG CTGGTGCCAGTCATTTGAAGAAAAACAGTCCTTGGAGGAAAAGCAGTCATGCTTAAAGTT CAAAGCTAATGATCACGGATATGACAACTTCCGTTCCAGTAATAAATACAGCTCATCTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTAATTTGGGTGGTCTCCGTGGTCCTGGCCGTCCCGGAAGCCTTGGGTTTTGACATGAT TACCACTGACTATAAAGGAAATCGCCTGCGAATCTGCTTGCTCCATCCTACTCAGAAAAC AGCCTTCATGCAGTTTTACAAGACAGCTAAAGATTGGTGGCTATTCAGTTTCTATTTCTG CTTGCCACTAGCCATCACTGCATTTTTTTATACCCTGATGACCTGTGAAATGCTGAGAAA GAAGAGTGGCATGCAAATTGCTTTAAATGATCACTTAAAGCAGAGACGGGAAGTGGCCAA AACCGTATTTTGCCTGGTCCTTGTCTTTGCCCTGTGTTGGCTTCCCCTTCATCTCAGCAG GATTTTGAAGCTCACTCTGTATGATCAAAATGATTCGAATAGATGTGAACTTTTGAGCTT TTTGTTGGTATTGGATTACATTGGCATCAACATGGCGTCCCTGAATTCCTGTATTAATCC AATAGCTCTGTATTTGGTGAGCAAAAGATTCAAAAACTGCTTTAAGTCATGCTTATGCTG CTGGTGCCAGTCATTTGAAGAAAAACAGTCCTTGGAGGAAAAGCAGTCATGCTTAAAGTT CAAAGCTAATGATCACGGATATGACAACTTCCGTTCCAGTAATAAATACAGCTCATCTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 132-292, + strand, RNAz p=0.998263 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 132-292, + strand, RNAz p=0.998263 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 132-292, gnl|bosTau2|chr12 (28503221-28503381) | |
| 132-292, gnl|Hg17|chr13 (77373345-77373185) | |
| 132-292, gnl|Mm7|chr14 (98254180-98254020) | |
| 525-660, gnl|bosTau2|chr12 (28509660-28509795) | |
| 525-660, gnl|canFam2|chr22 (34363952-34364059) | |
| 525-660, gnl|danRer3|chr23 (12729678-12729578) | |
| 525-660, gnl|echTel1|scaffold_3022 (4274-4381) | |
| 525-660, gnl|fr1|chrUn (32546844-32546737) | |
| 525-660, gnl|galGal2|chr1 (150668795-150668690) | |
| 525-660, gnl|hg17|chr13 (77370337-77370444) | |
| 525-660, gnl|Hg17|chr13 (77370472-77370337) | |
| 525-660, gnl|loxAfr1|scaffold_7037 (79041-78934) | |
| 525-660, gnl|mm7|chr14 (98249458-98249565) | |
| 525-660, gnl|Mm7|chr14 (98249593-98249458) | |
| 525-660, gnl|monDom2|scaffold_8 (15805808-15805915) | |
| 525-660, gnl|oryCun1|scaffold_137002 (7835-7943) | |
| 525-660, gnl|panTro1|chr14 (60009066-60009173) | |
| 525-660, gnl|rheMac2|chr17 (58389068-58389175) | |
| 525-660, gnl|rn3|chr15 (87909354-87909461) | |
| 525-660, gnl|tetNig1|chr15 (2484752-2484859) | |
| 525-660, gnl|xenTro1|scaffold_141 (1566412-1566307) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-292, gnl|bosTau2|chr12 (28503221-28503381) | |
| 132-292, gnl|Hg17|chr13 (77373345-77373185) | |
| 132-292, gnl|Mm7|chr14 (98254180-98254020) | |
| 525-660, gnl|bosTau2|chr12 (28509660-28509795) | |
| 525-660, gnl|canFam2|chr22 (34363952-34364059) | |
| 525-660, gnl|danRer3|chr23 (12729678-12729578) | |
| 525-660, gnl|echTel1|scaffold_3022 (4274-4381) | |
| 525-660, gnl|fr1|chrUn (32546844-32546737) | |
| 525-660, gnl|galGal2|chr1 (150668795-150668690) | |
| 525-660, gnl|hg17|chr13 (77370337-77370444) | |
| 525-660, gnl|Hg17|chr13 (77370472-77370337) | |
| 525-660, gnl|loxAfr1|scaffold_7037 (79041-78934) | |
| 525-660, gnl|mm7|chr14 (98249458-98249565) | |
| 525-660, gnl|Mm7|chr14 (98249593-98249458) | |
| 525-660, gnl|monDom2|scaffold_8 (15805808-15805915) | |
| 525-660, gnl|oryCun1|scaffold_137002 (7835-7943) | |
| 525-660, gnl|panTro1|chr14 (60009066-60009173) | |
| 525-660, gnl|rheMac2|chr17 (58389068-58389175) | |
| 525-660, gnl|rn3|chr15 (87909354-87909461) | |
| 525-660, gnl|tetNig1|chr15 (2484752-2484859) | |
| 525-660, gnl|xenTro1|scaffold_141 (1566412-1566307) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.145603) |