Non-Coding RNA Search

Ss1.1-Lym1-jns43_H10.f.5

Sequence:


               
               TTTTAAAAAGTCTTTTGAATAATTCTTTCAGTATAACTGGTCAGCTTAAAAAAAGGGACT
CAAAATGACTTTAAAATCACTTTTTAGAACATTAGGTATTTTTAAAATTTAAGGTCTGCT
TCTTAGTAGAAATAGTCATTTTATGCAAAGAACACAGTGGACTTTAGACTGAACTTAAGA
CATACCTCCCTCCCATCAAAGTATGATACAATCAGAAAAAAAGCCAGTAGCAGTATATTG
GGTTCAAAGTTAACAGGAAAATGTACGTTATCTGATGAGACATTGGTACTGATTGGGAAG
TATTCTGCTTTAAAGTGTTATATACTAAAATGTTTAAAGAATATTATGTGTCAAGTGATA
AAATGCAAAAATATTTTAAGCTGAAATGGTTCACGGTAAATTATTACTTTAGTTTCTGGG
CACTTAAACTTGTACTGTGCTATAAGCAAACAAGGGGGAAACAGTAAATATATATTTAAA
AAAAAAACACCCTCAGTTCCTAGCTCAAGTGATAGCACCCAACATTATGGAACCATGGTA
TTTTTTTCCTTGGGTTTCTTTGAGTGTGTTTTTCACTGCTGTCTGAAGAGTTTGTAATTG
AGTAAGCAGTGAGCATACACAATGTTTTAACTGCAAGACTGTGAACAGCTAATTGTGTAA
AACCGCTTAATAAAAATTACTTTTTTTCAACAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAAAAGTCTTTTGAATAATTCTTTCAGTATAACTGGTCAGCTTAAAAAAAGGGACT
CAAAATGACTTTAAAATCACTTTTTAGAACATTAGGTATTTTTAAAATTTAAGGTCTGCT
TCTTAGTAGAAATAGTCATTTTATGCAAAGAACACAGTGGACTTTAGACTGAACTTAAGA
CATACCTCCCTCCCATCAAAGTATGATACAATCAGAAAAAAAGCCAGTAGCAGTATATTG
GGTTCAAAGTTAACAGGAAAATGTACGTTATCTGATGAGACATTGGTACTGATTGGGAAG
TATTCTGCTTTAAAGTGTTATATACTAAAATGTTTAAAGAATATTATGTGTCAAGTGATA
AAATGCAAAAATATTTTAAGCTGAAATGGTTCACGGTAAATTATTACTTTAGTTTCTGGG
CACTTAAACTTGTACTGTGCTATAAGCAAACAAGGGGGAAACAGTAAATATATATTTAAA
AAAAAAACACCCTCAGTTCCTAGCTCAAGTGATAGCACCCAACATTATGGAACCATGGTA
TTTTTTTCCTTGGGTTTCTTTGAGTGTGTTTTTCACTGCTGTCTGAAGAGTTTGTAATTG
AGTAAGCAGTGAGCATACACAATGTTTTAACTGCAAGACTGTGAACAGCTAATTGTGTAA
AACCGCTTAATAAAAATTACTTTTTTTCAACAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               402-517, - strand, RNAz p=0.601568

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-517, - strand, RNAz p=0.601568

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-684, gnl|bosTau2|chr27 (138355-137679)
               

               
               1-684, gnl|canFam2|chr35 (20032582-20033283)
               

               
               1-684, gnl|dasNov1|scaffold_43879 (2979-2228)
               

               
               1-684, gnl|echTel1|scaffold_101463 (1588-879)
               

               
               1-684, gnl|hg17|chr6 (18331365-18332084)
               

               
               1-684, gnl|Hg17|chr6 (18331370-18332056)
               

               
               1-684, gnl|loxAfr1|scaffold_61929 (3632-2858)
               

               
               1-684, gnl|mm7|chr13 (46566054-46566678)
               

               
               1-684, gnl|Mm7|chr13 (46566059-46566668)
               

               
               1-684, gnl|monDom2|scaffold_3 (107343798-107344680)
               

               
               1-684, gnl|panTro1|chr5 (18702817-18703533)
               

               
               1-684, gnl|rheMac2|chr4 (18268876-18269579)
               

               
               1-684, gnl|rn3|chr17 (23656314-23655727)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr27 (138355-137679)
               

               
               1-684, gnl|canFam2|chr35 (20032582-20033283)
               

               
               1-684, gnl|dasNov1|scaffold_43879 (2979-2228)
               

               
               1-684, gnl|echTel1|scaffold_101463 (1588-879)
               

               
               1-684, gnl|hg17|chr6 (18331365-18332084)
               

               
               1-684, gnl|Hg17|chr6 (18331370-18332056)
               

               
               1-684, gnl|loxAfr1|scaffold_61929 (3632-2858)
               

               
               1-684, gnl|mm7|chr13 (46566054-46566678)
               

               
               1-684, gnl|Mm7|chr13 (46566059-46566668)
               

               
               1-684, gnl|monDom2|scaffold_3 (107343798-107344680)
               

               
               1-684, gnl|panTro1|chr5 (18702817-18703533)
               

               
               1-684, gnl|rheMac2|chr4 (18268876-18269579)
               

               
               1-684, gnl|rn3|chr17 (23656314-23655727)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               lin (0.291206)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)

	1-684, gnl\|bosTau2\|chr27 (138355-137679)
	1-684, gnl\|canFam2\|chr35 (20032582-20033283)
	1-684, gnl\|dasNov1\|scaffold_43879 (2979-2228)
	1-684, gnl\|echTel1\|scaffold_101463 (1588-879)
	1-684, gnl\|hg17\|chr6 (18331365-18332084)
	1-684, gnl\|Hg17\|chr6 (18331370-18332056)
	1-684, gnl\|loxAfr1\|scaffold_61929 (3632-2858)
	1-684, gnl\|mm7\|chr13 (46566054-46566678)
	1-684, gnl\|Mm7\|chr13 (46566059-46566668)
	1-684, gnl\|monDom2\|scaffold_3 (107343798-107344680)
	1-684, gnl\|panTro1\|chr5 (18702817-18703533)
	1-684, gnl\|rheMac2\|chr4 (18268876-18269579)
	1-684, gnl\|rn3\|chr17 (23656314-23655727)