Non-Coding RNA Search

Ss1.1-Lym1-jns46_A10.f.5

Sequence:


               
               GCTGAGCCACAACAGGAACTCCAAAGATGCTTTCTGTATCTCATTTAAGAAACAGTTCTT
TAAAATTGAAATGGACCCCTTTTGCTTGTCCTTAAGGACATTAGCTTCCAGTAGAAGAGT
TAGCACAGTATTTGTCTTGTCCCCTCTGTTTTGCCAATATTGAAAAATCCCACTAAAATA
GATGAAGAAGCAAGTGAGGAAAAATATCAAAATTCATTACCAAAGCCCAGAAAAAAGGCA
GACTCTTGCAAGATAAAAAGTCATGTGTGTCCTTCAGTATTTATTGAACAGAAGAAATGA
CTGACAAAGGACAATACAATCCAGTGCTCATATGGTAACATTCATGTCACTTACTGAATT
TGGTTCTTGTATGTATATTGCATACACATAAGGAAATTCAAAGTGTAAGTTGTCACTGTT
GAACCATCACCTTTTACATTCGTTTAATGAAATCATGGAATAGAGTAAAAACTAGCTCTT
AACTTAGTAATAATTATAATATGGTATTTAAAATCAGGTCACTACAGTAGGATTCTAAAT
ATTGCCGATTGAAAAGCCAAAATTATTAGTACTGTTGCAAAACGTTGGCCATAATTGACT
CCAATAGCATTTTAAATACTTGGATCCCACACCTATTTTATAAACTCGAGTTATAAAATG
GGTTTTCTAATTTGCTTGAATGCTTCATTTTTCTACCCTATACAGTGGTATTTGAGAAAA
GTTATTTCTGTCACTGCATTGGTAGAATCATCTCAATGTTAATATTTTGTTATTGGACAT
GTCTACACAAAATGGATTGGTTTTGTTTATACTGTGATACAGTTGGTTGAGAAATATTTT
AAATTGTTTTAATTTTATTTCAAGGGTAGAATACAAAAATCTCTTCTGTTATTATTTTCT
GTCAGTAGAAAAAAAATTAAAACACCAGATCTGTTGAGAAGGAGATGTGATAAATGATAA
AGATGGATAAGAACGTCTAATGAGAATGATTACGGCCAGTCGAATCACCTCTTTCCTTTG
AATTTTTTTAGCTAACGGATAACCTTCCCCCATACTTAAAAGTATAAAATCATATTTTAC
TGCTCATTATCAACTAAAATATTTTTCATTTGACATTGAGCACCCACTGGTCCTACTCAT
GAAGGCCCATGTCATGCAGATGGCTGGGAGAGTAAGAGAGCGCTAAAAACATACAACCGG
TTTTGGGAAACAGGGCACAAGTCAGGATCATACCCCGTGATATCTGTTTATTTTTATCTA
ATTTCCTTTGAATGGACAGTTGGGGACTCCATTTCTAAGGATAATAAACAAAGAAATAAA
ATGATCTTTGGCATTTCATCCTGCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAGCCACAACAGGAACTCCAAAGATGCTTTCTGTATCTCATTTAAGAAACAGTTCTT
TAAAATTGAAATGGACCCCTTTTGCTTGTCCTTAAGGACATTAGCTTCCAGTAGAAGAGT
TAGCACAGTATTTGTCTTGTCCCCTCTGTTTTGCCAATATTGAAAAATCCCACTAAAATA
GATGAAGAAGCAAGTGAGGAAAAATATCAAAATTCATTACCAAAGCCCAGAAAAAAGGCA
GACTCTTGCAAGATAAAAAGTCATGTGTGTCCTTCAGTATTTATTGAACAGAAGAAATGA
CTGACAAAGGACAATACAATCCAGTGCTCATATGGTAACATTCATGTCACTTACTGAATT
TGGTTCTTGTATGTATATTGCATACACATAAGGAAATTCAAAGTGTAAGTTGTCACTGTT
GAACCATCACCTTTTACATTCGTTTAATGAAATCATGGAATAGAGTAAAAACTAGCTCTT
AACTTAGTAATAATTATAATATGGTATTTAAAATCAGGTCACTACAGTAGGATTCTAAAT
ATTGCCGATTGAAAAGCCAAAATTATTAGTACTGTTGCAAAACGTTGGCCATAATTGACT
CCAATAGCATTTTAAATACTTGGATCCCACACCTATTTTATAAACTCGAGTTATAAAATG
GGTTTTCTAATTTGCTTGAATGCTTCATTTTTCTACCCTATACAGTGGTATTTGAGAAAA
GTTATTTCTGTCACTGCATTGGTAGAATCATCTCAATGTTAATATTTTGTTATTGGACAT
GTCTACACAAAATGGATTGGTTTTGTTTATACTGTGATACAGTTGGTTGAGAAATATTTT
AAATTGTTTTAATTTTATTTCAAGGGTAGAATACAAAAATCTCTTCTGTTATTATTTTCT
GTCAGTAGAAAAAAAATTAAAACACCAGATCTGTTGAGAAGGAGATGTGATAAATGATAA
AGATGGATAAGAACGTCTAATGAGAATGATTACGGCCAGTCGAATCACCTCTTTCCTTTG
AATTTTTTTAGCTAACGGATAACCTTCCCCCATACTTAAAAGTATAAAATCATATTTTAC
TGCTCATTATCAACTAAAATATTTTTCATTTGACATTGAGCACCCACTGGTCCTACTCAT
GAAGGCCCATGTCATGCAGATGGCTGGGAGAGTAAGAGAGCGCTAAAAACATACAACCGG
TTTTGGGAAACAGGGCACAAGTCAGGATCATACCCCGTGATATCTGTTTATTTTTATCTA
ATTTCCTTTGAATGGACAGTTGGGGACTCCATTTCTAAGGATAATAAACAAAGAAATAAA
ATGATCTTTGGCATTTCATCCTGCAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               47-1344, gnl|bosTau2|chr14 (16019428-16020706)
               

               
               47-1344, gnl|Hg17|chr8 (62576954-62575663)
               

               
               47-1344, gnl|Mm7|chr4 (9379056-9377612)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-1344, gnl|bosTau2|chr14 (16019428-16020706)
               

               
               47-1344, gnl|Hg17|chr8 (62576954-62575663)
               

               
               47-1344, gnl|Mm7|chr4 (9379056-9377612)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               gul (0.532765)
               

               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	47-1344, gnl\|bosTau2\|chr14 (16019428-16020706)
	47-1344, gnl\|Hg17\|chr8 (62576954-62575663)
	47-1344, gnl\|Mm7\|chr4 (9379056-9377612)

	gul (0.532765)
	ova (0.387397)
	elu (0.385356)
	fat (0.294855)
	ski (0.29347)
	cte (0.29274)
	fce (0.271592)
	sug (0.254582)
	nms (0.213858)
	aor (0.195274)
	sag (0.182715)
	mga (0.160205)
	lun (0.150489)
	lin (0.145603)
	thg (0.126791)
	tra (0.123092)
	ebs (0.118301)
	spc (0.113366)
	ldo (0.0970026)