Non-Coding RNA Search

Ss1.1-Lym1-jns48_H02.f.5

Sequence:


               
               GCGATCTAGAACCTCTTAATTATCCTCATCCTGCTACTACCTCTCTCCTTAACCCCAACC
CTGCCCACAGCCCTACTGTTTCCCATTGGATAAGAGTTAAGGGGCCAGTCTTAACCCGAA
GACATTCCATTAAAGTCTTGGGCACCTCTGCCAACCTCTCTGCTGGCCTAGTCAGAGCAG
GAGGGGGATCTGGAGAGAAACCCAGAATGCAACAAAACTAGGAGTTATGTCTCAGGGTAG
CCTTACTGATCATGGAGGATGGGAGTGGTGGTGAGATAAATAGGTGTAAAACAATCCTCC
TTGAGTATTCTTAAGGTCCTCACAGCGTGGGAACAGGAAGACCTCTAGAGCAAGTTTTCT
CAAAGTAGGCACTTTTGGCATTTTGGGCTGGATTAATTCTTGGAAGTGAGGGACTGTCCT
GTGCAGCATCTCTGGCCCACTGTAGTTATGACAACCAAAAATGTCCCCAGACTTGGCCAA
ATGTCTCCTAAGGGGCGAAATCACCTACCGTTGAGAGCCGGTGCTCTAGAGTCAAGATAT
TTTTCTCTTAAGTGATTTCAACTTAATCATCCTAAGTCTGAGCCATGGATTAACTAGGGC
CCCTTTTAAAGTAGCCTCAATAGGGCTGCACATAATCTCAAAACATTTCTTTATTCAGTG
TATTGCTTGTGTTTGCATGGGTTCATGTCTCTGTGATGGACGTCTACTGTGCCTCTTGCC
CTTACGCTCTCTGGAGAAGGGGTTCCTGCGGTGTGGAGGCATGACCAGGGTATAGGGAGA
CTGGGGGAGGGAGGGAGAGAAAGCAGTAGAGCAGTAGACATCCCAGCTTATCCTCCCCAA
ATTTAAAGCTCTGTTTCTGTGCCCCAGTCCTAGAACCAGACGCAAATAAGACTCAGGGAG
TTTTGTCTGAAGACCAAATCCCACTGCCCACCATGCTGAAGTCTTTAGGTGGGAAAATAA
TGTTGGAACAGGGTCTTTAGGCACTTTGTTTTCTCAGGTGTACTGGCCCCTTCTTTGCAG
GATGATTTGGGAGGGCAGAACAGATGAGCTCCAGCCTGCTGAGAAAGCAGGGGTCTCATT
AGCTGGGTAACGGGAAGCATCCTGTTTGATGGGAGTGGGGGTCAGGAGTGTGGGAACTAG
AATCTATTCTGCTGACTCCACCAGCCTTCCAGTCCGCCCCACCCACAGTGACCAAGGTTC
TAAGTTTTTCCAATTTCAGTGTATTTCCTGCAGTTTTTTGGTGTCTAAACTTGGTCATAG
AGATATCCCAGTTCAGTTCCAGTCTAGCTAGTTGCTCTGAAAGTAGCTCATCTTGTTGCC
CTAAAGTAGCTCAATAGCCTGAGGGTTATACTAGATCTAAAGGGTTAATAGGATAGGGCA
GAAAGATGGGGGACTCCTGGACTCTGGTCACCCTGATCTTGAGCCTTATTCCTATTCTTT
GGACACAGTCTTTTGTGCTCTCACCTTTAGCTACCTTCTCTAATGTGTATGCTGCCATCA
CTTGAACAATATTTAGAGTGATGGGAGTGGGTTTGAGAGTCATAATTTATATTAAAAAGT
GTTGGACTTTTAAGTGCATTTTCAAATAAAAAAATTTTAAGTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGATCTAGAACCTCTTAATTATCCTCATCCTGCTACTACCTCTCTCCTTAACCCCAACC
CTGCCCACAGCCCTACTGTTTCCCATTGGATAAGAGTTAAGGGGCCAGTCTTAACCCGAA
GACATTCCATTAAAGTCTTGGGCACCTCTGCCAACCTCTCTGCTGGCCTAGTCAGAGCAG
GAGGGGGATCTGGAGAGAAACCCAGAATGCAACAAAACTAGGAGTTATGTCTCAGGGTAG
CCTTACTGATCATGGAGGATGGGAGTGGTGGTGAGATAAATAGGTGTAAAACAATCCTCC
TTGAGTATTCTTAAGGTCCTCACAGCGTGGGAACAGGAAGACCTCTAGAGCAAGTTTTCT
CAAAGTAGGCACTTTTGGCATTTTGGGCTGGATTAATTCTTGGAAGTGAGGGACTGTCCT
GTGCAGCATCTCTGGCCCACTGTAGTTATGACAACCAAAAATGTCCCCAGACTTGGCCAA
ATGTCTCCTAAGGGGCGAAATCACCTACCGTTGAGAGCCGGTGCTCTAGAGTCAAGATAT
TTTTCTCTTAAGTGATTTCAACTTAATCATCCTAAGTCTGAGCCATGGATTAACTAGGGC
CCCTTTTAAAGTAGCCTCAATAGGGCTGCACATAATCTCAAAACATTTCTTTATTCAGTG
TATTGCTTGTGTTTGCATGGGTTCATGTCTCTGTGATGGACGTCTACTGTGCCTCTTGCC
CTTACGCTCTCTGGAGAAGGGGTTCCTGCGGTGTGGAGGCATGACCAGGGTATAGGGAGA
CTGGGGGAGGGAGGGAGAGAAAGCAGTAGAGCAGTAGACATCCCAGCTTATCCTCCCCAA
ATTTAAAGCTCTGTTTCTGTGCCCCAGTCCTAGAACCAGACGCAAATAAGACTCAGGGAG
TTTTGTCTGAAGACCAAATCCCACTGCCCACCATGCTGAAGTCTTTAGGTGGGAAAATAA
TGTTGGAACAGGGTCTTTAGGCACTTTGTTTTCTCAGGTGTACTGGCCCCTTCTTTGCAG
GATGATTTGGGAGGGCAGAACAGATGAGCTCCAGCCTGCTGAGAAAGCAGGGGTCTCATT
AGCTGGGTAACGGGAAGCATCCTGTTTGATGGGAGTGGGGGTCAGGAGTGTGGGAACTAG
AATCTATTCTGCTGACTCCACCAGCCTTCCAGTCCGCCCCACCCACAGTGACCAAGGTTC
TAAGTTTTTCCAATTTCAGTGTATTTCCTGCAGTTTTTTGGTGTCTAAACTTGGTCATAG
AGATATCCCAGTTCAGTTCCAGTCTAGCTAGTTGCTCTGAAAGTAGCTCATCTTGTTGCC
CTAAAGTAGCTCAATAGCCTGAGGGTTATACTAGATCTAAAGGGTTAATAGGATAGGGCA
GAAAGATGGGGGACTCCTGGACTCTGGTCACCCTGATCTTGAGCCTTATTCCTATTCTTT
GGACACAGTCTTTTGTGCTCTCACCTTTAGCTACCTTCTCTAATGTGTATGCTGCCATCA
CTTGAACAATATTTAGAGTGATGGGAGTGGGTTTGAGAGTCATAATTTATATTAAAAAGT
GTTGGACTTTTAAGTGCATTTTCAAATAAAAAAATTTTAAGTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               13-126, - strand, RNAz p=0.999164
               

               
               1002-1184, - strand, RNAz p=0.99399
               

               
               1447-1606, + strand, RNAz p=0.966802

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-126, - strand, RNAz p=0.999164
               

               
               1002-1184, - strand, RNAz p=0.99399
               

               
               1447-1606, + strand, RNAz p=0.966802

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               41-126, - strand, RNAmicro p=0.960503
               

               
               1134-1194, + strand, RNAmicro p=0.955218

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               41-126, - strand, RNAmicro p=0.960503
               

               
               1134-1194, + strand, RNAmicro p=0.955218

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_017860, -
               

               
               5' of AF286592, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017860, -
               

               
               5' of AF286592, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-1606, gnl|bosTau2|chr3 (16517995-16519618)
               

               
               13-1606, gnl|Hg17|chr1 (147838214-147836534)
               

               
               13-1606, gnl|Mm7|chr3 (95108830-95110362)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-1606, gnl|bosTau2|chr3 (16517995-16519618)
               

               
               13-1606, gnl|Hg17|chr1 (147838214-147836534)
               

               
               13-1606, gnl|Mm7|chr3 (95108830-95110362)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               amn (0.417711)
               

               
               fty (0.351679)
               

               
               cag (0.302389)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               cbl (0.229595)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fty (0.351679)
               

               
               cag (0.302389)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               cbl (0.229595)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	13-126, - strand, RNAz p=0.999164
	1002-1184, - strand, RNAz p=0.99399
	1447-1606, + strand, RNAz p=0.966802

	41-126, - strand, RNAmicro p=0.960503
	1134-1194, + strand, RNAmicro p=0.955218

	13-1606, gnl\|bosTau2\|chr3 (16517995-16519618)
	13-1606, gnl\|Hg17\|chr1 (147838214-147836534)
	13-1606, gnl\|Mm7\|chr3 (95108830-95110362)

	amn (0.417711)
	fty (0.351679)
	cag (0.302389)
	csk (0.281492)
	fce (0.271592)
	sug (0.254582)
	cbl (0.229595)
	jca (0.22792)
	nms (0.213858)
	cty (0.20816)
	ill (0.175593)
	sin (0.174948)
	fhi (0.169578)
	csp (0.161186)
	spl (0.143184)
	cst (0.140036)
	ssp (0.13552)
	pla (0.133672)
	cov (0.132153)
	bla (0.124347)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)