Non-Coding RNA Search

Ss1.1-Lym1-jns53_H10.f.5.5

Sequence:


               
               AACCAGGACATAGAATTTAAGCCTTCTCTCCTAAGTGTATGGTAGAACTAAAGACGACAA
CTAAGGGTCACCTGACATTGTGATTGGCTGATAATCCCAGGACAAAATTACTATTCAAGC
ATAAGACTGCTACAAAGATGTTTGATATAAAAGCTTGGGCTGAGTATGTTGTGGAATGGG
CTGCAAAGGACCCATATGGCTTCCTTACAACAGTTATTTTGGCCCTTACTCCATTGTTTC
TAGCAAGTGCTGTACTGTCCTGGAAATTGGCCAAAATGATCGAGGCCAGGGAAAAGGAGC
AAAAGAAGAAACAAAAACGTCAAGAAAATATTGCAAAAGCTAAACGACTAAAAAAAGATT
GAAGGAATGAACAAGCTCTGCAACTAGAGGAAAATCGTTTGGAAAATTATGCAGCTCTGG
AAGGACCACTAAGGTTTCTTTTCTGGACCTTATGACAGTATTATCTAGTAAACGAAGCCT
GAGCATATGGAAGAATCATGTTAGTTCTCACCTGTACTATAGCAACTTTTAGGCTTTGGT
GTGGAAGTCTCTTGACAGTTATCGTAAATTGGCATTTATGCTACAAAGTATTTAGTCATT
TGTCTTTTTGCAGTTTAAGTACTAAAATGAAAACATCCTGTGGATAAAAATGACTTTAGA
ACGTGAACTCTATTCAAATAATGGCTTAAAATGGGGTCCTGTTCTGGACAAAGGAAGTTA
AAAATGTAAAAATCAGAATTGTCCTAACATGAAAAGTGTGCTTTAGCTGAAAAGAGATAG
AGTATATTACTTACATCTTTTATCATAATTGTTTATTTCTTGGAATAGAATCATTTCTGG
CTTTCTTAGAGCAAAATAATCAATGAGTATTTCTATTTTCTGCATTTTTTTCATTTGGGC
TTTTGAGATACTGGTAATTATTAAACATTCTGCATTTTTTAAAAATCTAATTTTATACAG
AATTCTCTTAACTATGTAGTATAACACTTACTGGATATAACAATTTTTGTACTTATGAAC
ACTGCCATTTTCTTAGAAGTGACTTGTTGAGTAGAGTAACACTATGATTTAAAGCTTGCA
GTAAAAAGGCCAAACTTGGTAGTACCTTGGAACCAGCTTATTCTCACTTGTGCTAAGTAG
AAATGTGAAGTTAAAATGTCTGATCAGGAGTTCCCATCATGGCCCAGCAGTTAATGAACC
CGACTAGCATCCACGAGGATGCAGATTCAATCCCTGGCCTCTCTCAGTGAGTTAAGGCAT
TGCGGTGAGCTGTGGTGTAGGTTGCAGACGTGGCTTGGATCCTTCGTTGCTGTGGCATAG
GCTGGTGGCTGCAGCTTTGATTGGACCCTTAGCCTGGGAACCTCCATATGCTGCAGGTTC
AACCCTAAAAAGACAAAAAAAAAAGTCCGATCAGATAATTTGCTGATTATATAGATAACA
CTTTTGTTTTTATTTCCATTCTTTGTTAATTTAATTCATGTGGTAGTGATGCCTTATACG
TTTTGGTCAAACAGGTTCATGGTGAAAATTAATATTTCAAATTTCTTAGAAGGAATTTTT
AAAGAATAACAGTTAAGTCATATTTCATAAATGGTAAAGAAAGGCTTATTTAACATTTGG
AAAAATTTTGTTCAGCGTAGTAGTTTTTGGGTAAAAAGGTGTAAATTATGTCACAATGAG
AAGGAGCCTAAAGGCTATTTCCTTTAAATAGTATTACTGGAACTTCTTAACATGGTTTTT
ATAAATGCATGGTTAATAATTTCATTAGCTGTTGGTAATTAATAGCTCATTAATGTTTTC
CTCACCTCTGATAATGAATTTTAAATTACAGAAACTAGTCCAATAGCTTTAATTTAAAAA
TGAAACTAGATATTGAAATAAATTTGATACTTTTTTATAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCAGGACATAGAATTTAAGCCTTCTCTCCTAAGTGTATGGTAGAACTAAAGACGACAA
CTAAGGGTCACCTGACATTGTGATTGGCTGATAATCCCAGGACAAAATTACTATTCAAGC
ATAAGACTGCTACAAAGATGTTTGATATAAAAGCTTGGGCTGAGTATGTTGTGGAATGGG
CTGCAAAGGACCCATATGGCTTCCTTACAACAGTTATTTTGGCCCTTACTCCATTGTTTC
TAGCAAGTGCTGTACTGTCCTGGAAATTGGCCAAAATGATCGAGGCCAGGGAAAAGGAGC
AAAAGAAGAAACAAAAACGTCAAGAAAATATTGCAAAAGCTAAACGACTAAAAAAAGATT
GAAGGAATGAACAAGCTCTGCAACTAGAGGAAAATCGTTTGGAAAATTATGCAGCTCTGG
AAGGACCACTAAGGTTTCTTTTCTGGACCTTATGACAGTATTATCTAGTAAACGAAGCCT
GAGCATATGGAAGAATCATGTTAGTTCTCACCTGTACTATAGCAACTTTTAGGCTTTGGT
GTGGAAGTCTCTTGACAGTTATCGTAAATTGGCATTTATGCTACAAAGTATTTAGTCATT
TGTCTTTTTGCAGTTTAAGTACTAAAATGAAAACATCCTGTGGATAAAAATGACTTTAGA
ACGTGAACTCTATTCAAATAATGGCTTAAAATGGGGTCCTGTTCTGGACAAAGGAAGTTA
AAAATGTAAAAATCAGAATTGTCCTAACATGAAAAGTGTGCTTTAGCTGAAAAGAGATAG
AGTATATTACTTACATCTTTTATCATAATTGTTTATTTCTTGGAATAGAATCATTTCTGG
CTTTCTTAGAGCAAAATAATCAATGAGTATTTCTATTTTCTGCATTTTTTTCATTTGGGC
TTTTGAGATACTGGTAATTATTAAACATTCTGCATTTTTTAAAAATCTAATTTTATACAG
AATTCTCTTAACTATGTAGTATAACACTTACTGGATATAACAATTTTTGTACTTATGAAC
ACTGCCATTTTCTTAGAAGTGACTTGTTGAGTAGAGTAACACTATGATTTAAAGCTTGCA
GTAAAAAGGCCAAACTTGGTAGTACCTTGGAACCAGCTTATTCTCACTTGTGCTAAGTAG
AAATGTGAAGTTAAAATGTCTGATCAGGAGTTCCCATCATGGCCCAGCAGTTAATGAACC
CGACTAGCATCCACGAGGATGCAGATTCAATCCCTGGCCTCTCTCAGTGAGTTAAGGCAT
TGCGGTGAGCTGTGGTGTAGGTTGCAGACGTGGCTTGGATCCTTCGTTGCTGTGGCATAG
GCTGGTGGCTGCAGCTTTGATTGGACCCTTAGCCTGGGAACCTCCATATGCTGCAGGTTC
AACCCTAAAAAGACAAAAAAAAAAGTCCGATCAGATAATTTGCTGATTATATAGATAACA
CTTTTGTTTTTATTTCCATTCTTTGTTAATTTAATTCATGTGGTAGTGATGCCTTATACG
TTTTGGTCAAACAGGTTCATGGTGAAAATTAATATTTCAAATTTCTTAGAAGGAATTTTT
AAAGAATAACAGTTAAGTCATATTTCATAAATGGTAAAGAAAGGCTTATTTAACATTTGG
AAAAATTTTGTTCAGCGTAGTAGTTTTTGGGTAAAAAGGTGTAAATTATGTCACAATGAG
AAGGAGCCTAAAGGCTATTTCCTTTAAATAGTATTACTGGAACTTCTTAACATGGTTTTT
ATAAATGCATGGTTAATAATTTCATTAGCTGTTGGTAATTAATAGCTCATTAATGTTTTC
CTCACCTCTGATAATGAATTTTAAATTACAGAAACTAGTCCAATAGCTTTAATTTAAAAA
TGAAACTAGATATTGAAATAAATTTGATACTTTTTTATAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5R4D8_PONPY

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5R4D8_PONPY

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               163-1559, - strand, RNAz p=0.865518
               

               
               193-295, + strand, RNAz p=0.778866

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-1559, - strand, RNAz p=0.865518
               

               
               193-295, + strand, RNAz p=0.778866

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BX538015, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX538015, +

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               5-1167, gnl|bosTau2|chr7 (44054329-44053149)
               

               
               5-1167, gnl|Hg17|chr5 (60492806-60490697)
               

               
               5-1167, gnl|Mm7|chr13 (105175739-105178042)
               


               
               12-108, gnl|bosTau2|chr17 (18727879-18727979)
               

               
               12-108, gnl|Hg17|chr5 (60492801-60492697)
               

               
               12-108, gnl|Mm7|chr13 (105175745-105175843)
               


               
               115-295, gnl|bosTau2|chr17 (18728209-18728390)
               

               
               115-295, gnl|Hg17|chr5 (60491773-60491577)
               

               
               115-295, gnl|Mm7|chr13 (105176753-105176939)
               


               
               351-943, gnl|bosTau2|chr17 (18728683-18729289)
               

               
               351-943, gnl|Hg17|chr5 (60491525-60490922)
               


               
               1400-1682, gnl|bosTau2|chr19 (26985070-26984796)
               

               
               1400-1682, gnl|Hg17|chr5 (60490711-60490439)
               


               
               1699-1907, gnl|bosTau2|chr3 (70821093-70821307)
               

               
               1699-1907, gnl|Hg17|chr5 (60490399-60490187)
               


               
               1722-1892, gnl|bosTau2|chr19 (26984719-26984550)
               

               
               1722-1892, gnl|Hg17|chr5 (60490372-60490195)
               

               
               1722-1892, gnl|Mm7|chr13 (105178308-105178462)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1167, gnl|bosTau2|chr7 (44054329-44053149)
               

               
               5-1167, gnl|Hg17|chr5 (60492806-60490697)
               

               
               5-1167, gnl|Mm7|chr13 (105175739-105178042)
               


               
               12-108, gnl|bosTau2|chr17 (18727879-18727979)
               

               
               12-108, gnl|Hg17|chr5 (60492801-60492697)
               

               
               12-108, gnl|Mm7|chr13 (105175745-105175843)
               


               
               115-295, gnl|bosTau2|chr17 (18728209-18728390)
               

               
               115-295, gnl|Hg17|chr5 (60491773-60491577)
               

               
               115-295, gnl|Mm7|chr13 (105176753-105176939)
               


               
               351-943, gnl|bosTau2|chr17 (18728683-18729289)
               

               
               351-943, gnl|Hg17|chr5 (60491525-60490922)
               


               
               1400-1682, gnl|bosTau2|chr19 (26985070-26984796)
               

               
               1400-1682, gnl|Hg17|chr5 (60490711-60490439)
               


               
               1699-1907, gnl|bosTau2|chr3 (70821093-70821307)
               

               
               1699-1907, gnl|Hg17|chr5 (60490399-60490187)
               


               
               1722-1892, gnl|bosTau2|chr19 (26984719-26984550)
               

               
               1722-1892, gnl|Hg17|chr5 (60490372-60490195)
               

               
               1722-1892, gnl|Mm7|chr13 (105178308-105178462)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

Help | Less info


               
               sin (0.69979)
               

               
               gul (0.532765)
               

               
               fco (0.471624)
               

               
               mgp (0.461361)
               

               
               spc (0.453463)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               cje (0.330469)
               

               
               lin (0.291206)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.69979)
               

               
               gul (0.532765)
               

               
               fco (0.471624)
               

               
               mgp (0.461361)
               

               
               spc (0.453463)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               cje (0.330469)
               

               
               lin (0.291206)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	163-1559, - strand, RNAz p=0.865518
	193-295, + strand, RNAz p=0.778866

	5-1167, gnl\|bosTau2\|chr7 (44054329-44053149)
	5-1167, gnl\|Hg17\|chr5 (60492806-60490697)
	5-1167, gnl\|Mm7\|chr13 (105175739-105178042)

	12-108, gnl\|bosTau2\|chr17 (18727879-18727979)
	12-108, gnl\|Hg17\|chr5 (60492801-60492697)
	12-108, gnl\|Mm7\|chr13 (105175745-105175843)

	115-295, gnl\|bosTau2\|chr17 (18728209-18728390)
	115-295, gnl\|Hg17\|chr5 (60491773-60491577)
	115-295, gnl\|Mm7\|chr13 (105176753-105176939)

	351-943, gnl\|bosTau2\|chr17 (18728683-18729289)
	351-943, gnl\|Hg17\|chr5 (60491525-60490922)

	1400-1682, gnl\|bosTau2\|chr19 (26985070-26984796)
	1400-1682, gnl\|Hg17\|chr5 (60490711-60490439)

	1699-1907, gnl\|bosTau2\|chr3 (70821093-70821307)
	1699-1907, gnl\|Hg17\|chr5 (60490399-60490187)

	1722-1892, gnl\|bosTau2\|chr19 (26984719-26984550)
	1722-1892, gnl\|Hg17\|chr5 (60490372-60490195)
	1722-1892, gnl\|Mm7\|chr13 (105178308-105178462)

	sin (0.69979)
	gul (0.532765)
	fco (0.471624)
	mgp (0.461361)
	spc (0.453463)
	elu (0.385356)
	thg (0.380373)
	cje (0.330469)
	lin (0.291206)
	col (0.195008)
	ill (0.175593)
	eye (0.170503)
	nco (0.161734)
	eli (0.151814)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	ste (0.135208)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	eru (0.120048)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)