Non-Coding RNA Search

Ss1.1-Lym1-jns54_G04.f.5

Sequence:


               
               GACGCTTTCTGCATGTAGTCAGGTGTGGAACGTTTTTGCAACGTGGTCTGGCTCTTTGCC
GGACGGCGTGCGCCCAAGTGCTTGGCCAGCCGCGGCCTTGCGGGCCTTGAGGGCCTACAA
ATTTGGTCTTTTTTTCACTGGTTTAAGATCTCGTGTCACGCCACTCGGCGCCCTGACCCG
GCTTCACCATGTTGGTGCTGTTTGAAACGTCCGTCGGCTACGCCATCTTTAAGGTTTTGA
ATGAGAAGAAACTTCAAGAGGTTGATAGTTTGTGGAAAGAATTTGAAACTCCAGAAAAAG
CAAATAAAGTTGTAAAGCTGAAACATTTTGAGAAATTTCAGGATACAGCAGAAGCATTGG
CAGCATTCACGGCTCTGATGGAGGGCAAAATCAATAAGCAGCTCAAGAAAGTTCTGAAGA
AAATAGTTAAAGAAGCCCATGAACCCCTGGCTGTAGCTGATGCTAAACTAGGAGGGGTCA
TAAAGGAAAAACTAAATCTCAGTTGTATCCATAGTCCTGTTGTTAATGAGCTTATGAGAG
GAATCCGGTCACAGATGGATGGATTAATCCCTGGTGTAGAGCCACGTGAAATGGCAGCTA
TGTGTCTTGGGTTGGCACACAGCTTGTCCCGATACAGATTGAAATTTAGTGCTGATAAAG
TGGACACAATGATTGTTCAGGCAATTTCCCTGTTAGATGACTTAGATAAAGAACTGAACA
ACTACATTATGCGGTGTAGAGAATGGTATGGCTGGCATTTCCCTGAATTAGGAAAAATTA
TTTCAGATAATTTGACATACTGCAAGTGTTTACAGAAAGTTGGCGATCGGAAGAATTATG
CCTCAGCCAAACTTTCTGAATTACTGCCAGAGGAAGTTGAAGCAGAAGTGAAGGCAGCTG
CAGAGATATCTATGGGAACAGAGGTTTCAGAAGAAGATATTTGCAACATTCTGCATCTCT
GCACTCAGGTGATTGAAATCTCTGAATATAGAACCCAGCTCTACGAATATCTGCAAAATC
GAATGATGGCCATTGCACCCAATGTTACAGTCATGGTTGGGGAATTAGTTGGAGCACGGC
TTATTGCTCATGCAGGTTCTCTTTTGAATTTAGCCAAACATGCAGCTTCCACAGTCCAGA
TTCTTGGAGCAGAAAAGGCACTCTTCAGAGCCCTCAAGTCTAGACGAGATACCCCTAAGT
ATGGTCTCATTTATCATGCTTCACTTGTAGGCCAGACAAGTCCCAAACACAAAGGAAAGA
TTTCTCGAATGCTGGCAGCCAAAACTGTTTTGGCAATCCGCTATGATGCATTTGGAGAAG
ATTCCAGTTCTGCAATGGGAGTTGAGAACAGAGCAAAATTAGAGGCCAGGTTGAGAACCT
TGGAAGATAGAGGGATAAGGAAAATAAGTGGAACAGGAAAGGCATTAGCAAAAGCTGAAA
AATACGAACATAAAAGTGAGGTGAAGACTTACGATCCTTCTGGTGACTCCACACTGCCAA
CCTTTTCTAAAAAACGCAGGATTGAACAGGTGGACAAAGAGGATGAAGTTATTGAAAAGA
AGGCCAAAAAAGCCAAGGTTAAAATTAAAGTTGAAGAAGAAGTAGTAGAAGAAGAAGTAG
AAGAAGAAGGAGTACAAGTGGTTGAAGAACAGGAGACATCTGTAAAGAAGAAGAAGAAAA
AGGACAAAAAGAAACACATTAAGGAAGAACTCCTTTCTGAGGAAGAACCATGCACCAGCA
CAGCAATTGCTAGTCCAGAGAAAAAGAAGAAAAAGAAAAAAAAGAAAGTTAATGAGGACT
AATGGAATGAATCATTCTTTCAAAAATTTCCTAATTGAACCACCTGTCCACATCATGCTT
AAGATTCAGTCAGAAATAATATCAGAGATGCTCTCTAAAATATTTGATGGCAGGTTGGGT
GAAACAATGATTAATCATCAGTAGCATTTCATGCTTGTTTGTGTCTTGACACCACTTCAA
CTGTTAATTTTATGTCATTTCTTAGAATATTTGTTAAATAAAAATATTTTCTTTGTATTT
TAAGTCAGTTTTGTGATTTCTGTATTTTAGGTAGAGAATATTTGGCCATTTCTGTATTTT
ATTTAGCATTTTGTGATTGTTATTTTGATAATTTTACCAGAAAAATGAAAGCTGTGAACC
ATTCATTTGAAACTTAGCCTTTTGTAAAGCAGTAATTAGAAACTCTGTAGTTGTGAAAAG
TGCAAGGAAATGATTGTTAATCTATATCCTGATTTGTTTTGTTTCAGACATGTTGGGGCA
TGTGGAAATTCCCAGGCTTGGGATCTAACCCATACCATAGCTATAACCAGAGCCACAGTG
GTGACAGCGCCGAATACTTAACTTGATGTCCCACAAGGGAGCTCCCTTGATTTGTTTTAA
AGTAATCTAAAGTAGCTGCATCCATGACATATGGAAGTTCCTAGGTCCGGGATCATATCT
GAGCTTAATCCCTCAGATTCTTAATCCCTCGCACCACACCAGGAACTCCTAAAGTGAATT
TTTTAAAAAGATAATATAAAATGATTTTATAGTAAGGAATAAGGGTGAAACAAGATGAAC
AAAAAAGTCAGTAGTGTTGAGGCTTATAAACTAGGACCAAGAACACCAAAGAGAAATCTT
TCTTTCTAGAAGGTGGTATTTTAATAGGTGAATAGCATCCTCAGCCGTCAGCCATCTAGT
CATGATAGTCTTAAGTTTAATGGACTTTTATGTCTTGCATTTCTGTGTATGCCACAGGCA
TAGTGATTTAAAAAAAAAAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGCTTTCTGCATGTAGTCAGGTGTGGAACGTTTTTGCAACGTGGTCTGGCTCTTTGCC
GGACGGCGTGCGCCCAAGTGCTTGGCCAGCCGCGGCCTTGCGGGCCTTGAGGGCCTACAA
ATTTGGTCTTTTTTTCACTGGTTTAAGATCTCGTGTCACGCCACTCGGCGCCCTGACCCG
GCTTCACCATGTTGGTGCTGTTTGAAACGTCCGTCGGCTACGCCATCTTTAAGGTTTTGA
ATGAGAAGAAACTTCAAGAGGTTGATAGTTTGTGGAAAGAATTTGAAACTCCAGAAAAAG
CAAATAAAGTTGTAAAGCTGAAACATTTTGAGAAATTTCAGGATACAGCAGAAGCATTGG
CAGCATTCACGGCTCTGATGGAGGGCAAAATCAATAAGCAGCTCAAGAAAGTTCTGAAGA
AAATAGTTAAAGAAGCCCATGAACCCCTGGCTGTAGCTGATGCTAAACTAGGAGGGGTCA
TAAAGGAAAAACTAAATCTCAGTTGTATCCATAGTCCTGTTGTTAATGAGCTTATGAGAG
GAATCCGGTCACAGATGGATGGATTAATCCCTGGTGTAGAGCCACGTGAAATGGCAGCTA
TGTGTCTTGGGTTGGCACACAGCTTGTCCCGATACAGATTGAAATTTAGTGCTGATAAAG
TGGACACAATGATTGTTCAGGCAATTTCCCTGTTAGATGACTTAGATAAAGAACTGAACA
ACTACATTATGCGGTGTAGAGAATGGTATGGCTGGCATTTCCCTGAATTAGGAAAAATTA
TTTCAGATAATTTGACATACTGCAAGTGTTTACAGAAAGTTGGCGATCGGAAGAATTATG
CCTCAGCCAAACTTTCTGAATTACTGCCAGAGGAAGTTGAAGCAGAAGTGAAGGCAGCTG
CAGAGATATCTATGGGAACAGAGGTTTCAGAAGAAGATATTTGCAACATTCTGCATCTCT
GCACTCAGGTGATTGAAATCTCTGAATATAGAACCCAGCTCTACGAATATCTGCAAAATC
GAATGATGGCCATTGCACCCAATGTTACAGTCATGGTTGGGGAATTAGTTGGAGCACGGC
TTATTGCTCATGCAGGTTCTCTTTTGAATTTAGCCAAACATGCAGCTTCCACAGTCCAGA
TTCTTGGAGCAGAAAAGGCACTCTTCAGAGCCCTCAAGTCTAGACGAGATACCCCTAAGT
ATGGTCTCATTTATCATGCTTCACTTGTAGGCCAGACAAGTCCCAAACACAAAGGAAAGA
TTTCTCGAATGCTGGCAGCCAAAACTGTTTTGGCAATCCGCTATGATGCATTTGGAGAAG
ATTCCAGTTCTGCAATGGGAGTTGAGAACAGAGCAAAATTAGAGGCCAGGTTGAGAACCT
TGGAAGATAGAGGGATAAGGAAAATAAGTGGAACAGGAAAGGCATTAGCAAAAGCTGAAA
AATACGAACATAAAAGTGAGGTGAAGACTTACGATCCTTCTGGTGACTCCACACTGCCAA
CCTTTTCTAAAAAACGCAGGATTGAACAGGTGGACAAAGAGGATGAAGTTATTGAAAAGA
AGGCCAAAAAAGCCAAGGTTAAAATTAAAGTTGAAGAAGAAGTAGTAGAAGAAGAAGTAG
AAGAAGAAGGAGTACAAGTGGTTGAAGAACAGGAGACATCTGTAAAGAAGAAGAAGAAAA
AGGACAAAAAGAAACACATTAAGGAAGAACTCCTTTCTGAGGAAGAACCATGCACCAGCA
CAGCAATTGCTAGTCCAGAGAAAAAGAAGAAAAAGAAAAAAAAGAAAGTTAATGAGGACT
AATGGAATGAATCATTCTTTCAAAAATTTCCTAATTGAACCACCTGTCCACATCATGCTT
AAGATTCAGTCAGAAATAATATCAGAGATGCTCTCTAAAATATTTGATGGCAGGTTGGGT
GAAACAATGATTAATCATCAGTAGCATTTCATGCTTGTTTGTGTCTTGACACCACTTCAA
CTGTTAATTTTATGTCATTTCTTAGAATATTTGTTAAATAAAAATATTTTCTTTGTATTT
TAAGTCAGTTTTGTGATTTCTGTATTTTAGGTAGAGAATATTTGGCCATTTCTGTATTTT
ATTTAGCATTTTGTGATTGTTATTTTGATAATTTTACCAGAAAAATGAAAGCTGTGAACC
ATTCATTTGAAACTTAGCCTTTTGTAAAGCAGTAATTAGAAACTCTGTAGTTGTGAAAAG
TGCAAGGAAATGATTGTTAATCTATATCCTGATTTGTTTTGTTTCAGACATGTTGGGGCA
TGTGGAAATTCCCAGGCTTGGGATCTAACCCATACCATAGCTATAACCAGAGCCACAGTG
GTGACAGCGCCGAATACTTAACTTGATGTCCCACAAGGGAGCTCCCTTGATTTGTTTTAA
AGTAATCTAAAGTAGCTGCATCCATGACATATGGAAGTTCCTAGGTCCGGGATCATATCT
GAGCTTAATCCCTCAGATTCTTAATCCCTCGCACCACACCAGGAACTCCTAAAGTGAATT
TTTTAAAAAGATAATATAAAATGATTTTATAGTAAGGAATAAGGGTGAAACAAGATGAAC
AAAAAAGTCAGTAGTGTTGAGGCTTATAAACTAGGACCAAGAACACCAAAGAGAAATCTT
TCTTTCTAGAAGGTGGTATTTTAATAGGTGAATAGCATCCTCAGCCGTCAGCCATCTAGT
CATGATAGTCTTAAGTTTAATGGACTTTTATGTCTTGCATTTCTGTGTATGCCACAGGCA
TAGTGATTTAAAAAAAAAAAAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q53SA4_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q53SA4_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1490-2037, gnl|bosTau2|chr1 (46244509-46245074)
               

               
               1490-2037, gnl|Hg17|chr16 (58616277-58615765)
               

               
               1490-2037, gnl|Mm7|chr1 (59960195-59962662)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1490-2037, gnl|bosTau2|chr1 (46244509-46245074)
               

               
               1490-2037, gnl|Hg17|chr16 (58616277-58615765)
               

               
               1490-2037, gnl|Mm7|chr1 (59960195-59962662)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               spl (0.859107)
               

               
               liv (0.731422)
               

               
               lyg (0.665513)
               

               
               ret (0.514933)
               

               
               lin (0.436808)
               

               
               cty (0.41632)
               

               
               bla (0.373042)
               

               
               tbr (0.308356)
               

               
               ski (0.29347)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.859107)
               

               
               liv (0.731422)
               

               
               lyg (0.665513)
               

               
               ret (0.514933)
               

               
               lin (0.436808)
               

               
               cty (0.41632)
               

               
               bla (0.373042)
               

               
               tbr (0.308356)
               

               
               ski (0.29347)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	1490-2037, gnl\|bosTau2\|chr1 (46244509-46245074)
	1490-2037, gnl\|Hg17\|chr16 (58616277-58615765)
	1490-2037, gnl\|Mm7\|chr1 (59960195-59962662)

	spl (0.859107)
	liv (0.731422)
	lyg (0.665513)
	ret (0.514933)
	lin (0.436808)
	cty (0.41632)
	bla (0.373042)
	tbr (0.308356)
	ski (0.29347)
	sug (0.254582)
	thg (0.253582)
	cbe (0.239234)
	ece (0.229305)
	tes (0.207814)
	aor (0.195274)
	nlu (0.191681)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	fco (0.157208)
	lun (0.150489)
	kid (0.129735)
	ova (0.129132)
	tra (0.123092)
	eep (0.122564)
	eje (0.0988338)