Non-Coding RNA Search

Ss1.1-Lym1-jns56_A09.f.5

Sequence:


               
               AGTCATTACCAACAAAGCTGTTAAGGGCAAATATAAGTTCTTACAGAAGTATTATCACCG
GGGTGCCTTCTTCATGGATGAGGATGAAGAAGTATACAAGAGAGATTTCAGTGCACCTAC
CCTGGAGGATCATTTCAACAAAACCATTCTTCCCAAAGTCATGCAGGTCAAGAACTTTGG
ACGCTCTGGCCGTACCAAATATACCCACCTCGTGGATCAAGATACCACCTCCTTTGACTC
AGCATGGGGCCAAGAGAGTGCCCAGAACACAAAGTTCTTTAAACAAAAAGCAGCTGGGGT
ACGAGATGTATTTGAACGGCCGTCTGCCAAGAAGCGGAAAACTACTTAGAGTTCAACTGC
TTATTTTTCCAGCTGTGGGACACAACAGGAAATCTCAGCATCTGGTCTTTGATTTGCTTT
TACTATTATTTACATGGCCCCTGTATCCAGCCTTCTGGACCTACTGCCATACTTGTGATG
CTGGGCAAGCCCAGTCTTTGAAAGTGCTTTGTGAGGTTTGGACTCACTCGTGCTGAGAAA
CCTGCAGAAAAGCACTGTCCAGGTAGGATAAGAGACTCCCCACCTAGGACTATTTCTGAG
AAATCTTCGATTTCTACACTGCTCCATACTCATTTGGAACTGTTCCAGGGTTTCTTTTTC
CAGCCCTTAGCTTGGGTTAGAAACATGGGTGTTCATGTTGAGTGACGGAAAATACATCAC
TTCCTTACGGGAAACCTAAGCTCATTGGAATCTGTTTTGCATTTCTGGGATAAATCTTTT
TAGGCAAACAGACTTTTTGATTCATTTATGTGTGTCAAGAAATAAAAGAATCATACATCA
ACAAGTTTTTTAGCATACCAGAAATAAAATATTTAGGCTGACAAGTATCTTACCTATTAA
AAGCAGAGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCATTACCAACAAAGCTGTTAAGGGCAAATATAAGTTCTTACAGAAGTATTATCACCG
GGGTGCCTTCTTCATGGATGAGGATGAAGAAGTATACAAGAGAGATTTCAGTGCACCTAC
CCTGGAGGATCATTTCAACAAAACCATTCTTCCCAAAGTCATGCAGGTCAAGAACTTTGG
ACGCTCTGGCCGTACCAAATATACCCACCTCGTGGATCAAGATACCACCTCCTTTGACTC
AGCATGGGGCCAAGAGAGTGCCCAGAACACAAAGTTCTTTAAACAAAAAGCAGCTGGGGT
ACGAGATGTATTTGAACGGCCGTCTGCCAAGAAGCGGAAAACTACTTAGAGTTCAACTGC
TTATTTTTCCAGCTGTGGGACACAACAGGAAATCTCAGCATCTGGTCTTTGATTTGCTTT
TACTATTATTTACATGGCCCCTGTATCCAGCCTTCTGGACCTACTGCCATACTTGTGATG
CTGGGCAAGCCCAGTCTTTGAAAGTGCTTTGTGAGGTTTGGACTCACTCGTGCTGAGAAA
CCTGCAGAAAAGCACTGTCCAGGTAGGATAAGAGACTCCCCACCTAGGACTATTTCTGAG
AAATCTTCGATTTCTACACTGCTCCATACTCATTTGGAACTGTTCCAGGGTTTCTTTTTC
CAGCCCTTAGCTTGGGTTAGAAACATGGGTGTTCATGTTGAGTGACGGAAAATACATCAC
TTCCTTACGGGAAACCTAAGCTCATTGGAATCTGTTTTGCATTTCTGGGATAAATCTTTT
TAGGCAAACAGACTTTTTGATTCATTTATGTGTGTCAAGAAATAAAAGAATCATACATCA
ACAAGTTTTTTAGCATACCAGAAATAAAATATTTAGGCTGACAAGTATCTTACCTATTAA
AAGCAGAGAATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61862446|ref|XP_617520.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862446|ref|XP_617520.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               477-594, - strand, RNAz p=0.998933
               

               
               627-719, + strand, RNAz p=0.999778

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-594, - strand, RNAz p=0.998933
               

               
               627-719, + strand, RNAz p=0.999778

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of U04209, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of U04209, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-108, gnl|bosTau2|chr18 (10571628-10571734)
               

               
               1-108, gnl|Mm7|chr4 (110667207-110667314)
               


               
               160-896, gnl|bosTau2|chr21 (34531119-34530378)
               

               
               160-896, gnl|Hg17|chr15 (41884776-41884008)
               

               
               160-896, gnl|Mm7|chr2 (121203159-121202442)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-108, gnl|bosTau2|chr18 (10571628-10571734)
               

               
               1-108, gnl|Mm7|chr4 (110667207-110667314)
               


               
               160-896, gnl|bosTau2|chr21 (34531119-34530378)
               

               
               160-896, gnl|Hg17|chr15 (41884776-41884008)
               

               
               160-896, gnl|Mm7|chr2 (121203159-121202442)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cte (0.29274)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	477-594, - strand, RNAz p=0.998933
	627-719, + strand, RNAz p=0.999778

	1-108, gnl\|bosTau2\|chr18 (10571628-10571734)
	1-108, gnl\|Mm7\|chr4 (110667207-110667314)

	160-896, gnl\|bosTau2\|chr21 (34531119-34530378)
	160-896, gnl\|Hg17\|chr15 (41884776-41884008)
	160-896, gnl\|Mm7\|chr2 (121203159-121202442)

	cte (0.29274)
	csk (0.281492)
	fce (0.271592)
	tes (0.207814)
	hea (0.204499)
	aor (0.195274)
	sto (0.179824)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	fco (0.157208)
	spl (0.143184)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	cty (0.10408)
	nbm (0.0993246)