Ss1.1-Lym1-jns57_B06.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAAGAAACAGCCCTGCTGCCCGCTACTTAACCAACAGAGGCCTGACTCCACGAGACTT CAACTCCTATGGCTCCCGCCGAGGGAACGACGCCATCATGGCGAGAGGGACATTTGCTAA CATCCGCTTACTAAACAAGTTCTTGAACAAGCAGGCACCACAGACCATCCATCTGCCTTC TGGAGAAGTGCTTGACGTGTTCGATGCCGCTGAGCGGTACCAGCAGGCGGGCCTTCCCCT GATCATTCTGGCCGGCAAGGAGTATGGCTCTGGCAGCTCCCGAGACTGGGCAGCCAAGGG CCCCTTCCTGTTGGGAATCAAGGCTGTCCTGGCTGAGAGTTACGAGCGCATTCACCGAAG TAACTTGGTGGGAATGGGGGTGATCCCCCTCGAGTACCTCCCTGGGGAGAATGCAGACAC CCTGGGACTCACAGGGCGGGAACGATACACTATCAGCATTCCAGAAACCCTCAAACCACA AATGAAAGTCCAGGTCAAGCTCGATACTGGGAAGACCTTCCAGGCTGTCATGAGGTTTGA CACCGACGTGGAGCTCACTTATTTCCACAACGGGGGCATCCTCAACTACATGATCCGCAA GATGGCCAAGTAGGCCCTGGTTTCCTCGGAGACTGGCATTCCTGCCACAAAGCCGCAGAG CCTGAAGCCCACGGACCCCCTGCGGCACCGCAGCAGCCCCTCCCTTTGCCTAACCACGCC CTCATCCCGCCCACTCCTCCCTCGCCCCGCCCCCTCCTCCCTGCCCTGGGCGCCCTGAGG TTCAGGCCCGGTTCTCTGCCCACAAAATCAGCAGTTTCTACTTTCTCTATTTTTATTGAT CTTTTTATCTTTTTCTAGAATTTGGAAGCTTAGAATGATGGGGTTGTGAATAGTGCCAGA AAGGGAGAGCTGAGCTCTCTTCAGTATTACTGATCCACAGAATGTTGATTTTTCACTCTT AGCCTCTTAATGTTCAGCTGCACGCATATACTTCTCTGGCCCCTTTTTTGGCTCCTCTCT GTTACCCTCTGCTCAGTGAAACCTTTGCCCTGAGAGTCCTTCACCCCTGAACCCTGCACC AGAGTTAACTGACAGGGTAGTGAGGAACTCTTGCATTCAAATCCTAGGTGTGATCGTTTC TCCCCAACCCCCCTTTTCCTCCAGAGTGAATGATCCAGACGTGGTCAGAATTTGAAACTT GGATTTATGTACCTTTTGATAGATCGGCACTGAAGAAATATGAAGTTTTCCTTTTCAGTC TTCAAAAATGTTTTCCTATAAATTTTTTCATTTATCAAGACGAGAACATTGTTTGAAGGG GGTTTTGGAGAGAGAAGCAGAACATTTCTAATTTGAATAAGATTAAATCTATTTTCAAGG AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAAGAAACAGCCCTGCTGCCCGCTACTTAACCAACAGAGGCCTGACTCCACGAGACTT CAACTCCTATGGCTCCCGCCGAGGGAACGACGCCATCATGGCGAGAGGGACATTTGCTAA CATCCGCTTACTAAACAAGTTCTTGAACAAGCAGGCACCACAGACCATCCATCTGCCTTC TGGAGAAGTGCTTGACGTGTTCGATGCCGCTGAGCGGTACCAGCAGGCGGGCCTTCCCCT GATCATTCTGGCCGGCAAGGAGTATGGCTCTGGCAGCTCCCGAGACTGGGCAGCCAAGGG CCCCTTCCTGTTGGGAATCAAGGCTGTCCTGGCTGAGAGTTACGAGCGCATTCACCGAAG TAACTTGGTGGGAATGGGGGTGATCCCCCTCGAGTACCTCCCTGGGGAGAATGCAGACAC CCTGGGACTCACAGGGCGGGAACGATACACTATCAGCATTCCAGAAACCCTCAAACCACA AATGAAAGTCCAGGTCAAGCTCGATACTGGGAAGACCTTCCAGGCTGTCATGAGGTTTGA CACCGACGTGGAGCTCACTTATTTCCACAACGGGGGCATCCTCAACTACATGATCCGCAA GATGGCCAAGTAGGCCCTGGTTTCCTCGGAGACTGGCATTCCTGCCACAAAGCCGCAGAG CCTGAAGCCCACGGACCCCCTGCGGCACCGCAGCAGCCCCTCCCTTTGCCTAACCACGCC CTCATCCCGCCCACTCCTCCCTCGCCCCGCCCCCTCCTCCCTGCCCTGGGCGCCCTGAGG TTCAGGCCCGGTTCTCTGCCCACAAAATCAGCAGTTTCTACTTTCTCTATTTTTATTGAT CTTTTTATCTTTTTCTAGAATTTGGAAGCTTAGAATGATGGGGTTGTGAATAGTGCCAGA AAGGGAGAGCTGAGCTCTCTTCAGTATTACTGATCCACAGAATGTTGATTTTTCACTCTT AGCCTCTTAATGTTCAGCTGCACGCATATACTTCTCTGGCCCCTTTTTTGGCTCCTCTCT GTTACCCTCTGCTCAGTGAAACCTTTGCCCTGAGAGTCCTTCACCCCTGAACCCTGCACC AGAGTTAACTGACAGGGTAGTGAGGAACTCTTGCATTCAAATCCTAGGTGTGATCGTTTC TCCCCAACCCCCCTTTTCCTCCAGAGTGAATGATCCAGACGTGGTCAGAATTTGAAACTT GGATTTATGTACCTTTTGATAGATCGGCACTGAAGAAATATGAAGTTTTCCTTTTCAGTC TTCAAAAATGTTTTCCTATAAATTTTTTCATTTATCAAGACGAGAACATTGTTTGAAGGG GGTTTTGGAGAGAGAAGCAGAACATTTCTAATTTGAATAAGATTAAATCTATTTTCAAGG AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 42-160, - strand, RNAz p=0.656383 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-160, - strand, RNAz p=0.656383 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 42-187, gnl|bosTau2|chr8 (6291767-6291622) | |
| 42-187, gnl|canFam2|chr11 (52778937-52779116) | |
| 42-187, gnl|danRer3|chr25 (5018173-5017992) | |
| 42-187, gnl|dasNov1|scaffold_15213 (2325-2181) | |
| 42-187, gnl|echTel1|scaffold_122540 (575-744) | |
| 42-187, gnl|fr1|chrUn (291447693-291447534) | |
| 42-187, gnl|galGal2|chrZ_random (4657706-4657885) | |
| 42-187, gnl|hg17|chr9 (32426223-32426402) | |
| 42-187, gnl|Hg17|chr9 (32426247-32426392) | |
| 42-187, gnl|loxAfr1|scaffold_13138 (28029-28209) | |
| 42-187, gnl|mm7|chr4 (40329190-40329354) | |
| 42-187, gnl|Mm7|chr4 (40329199-40329344) | |
| 42-187, gnl|monDom2|scaffold_19 (31977820-31977998) | |
| 42-187, gnl|oryCun1|scaffold_158649 (1880-2053) | |
| 42-187, gnl|panTro1|chr11 (32920801-32920980) | |
| 42-187, gnl|rheMac2|chr15 (44790402-44790223) | |
| 42-187, gnl|rn3|chr5 (57585095-57585265) | |
| 42-187, gnl|tetNig1|chrUn_random (114647983-114648146) | |
| 42-187, gnl|xenTro1|scaffold_28 (2105279-2105454) | |
| 190-314, gnl|bosTau2|chr8 (6288151-6288027) | |
| 190-314, gnl|Hg17|chr9 (32430462-32430586) | |
| 190-314, gnl|Mm7|chr4 (40332201-40332325) | |
| 498-1384, gnl|bosTau2|chr8 (6284683-6283825) | |
| 498-1384, gnl|Hg17|chr9 (32439994-32440834) | |
| 498-1384, gnl|Mm7|chr4 (40336015-40336801) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-187, gnl|bosTau2|chr8 (6291767-6291622) | |
| 42-187, gnl|canFam2|chr11 (52778937-52779116) | |
| 42-187, gnl|danRer3|chr25 (5018173-5017992) | |
| 42-187, gnl|dasNov1|scaffold_15213 (2325-2181) | |
| 42-187, gnl|echTel1|scaffold_122540 (575-744) | |
| 42-187, gnl|fr1|chrUn (291447693-291447534) | |
| 42-187, gnl|galGal2|chrZ_random (4657706-4657885) | |
| 42-187, gnl|hg17|chr9 (32426223-32426402) | |
| 42-187, gnl|Hg17|chr9 (32426247-32426392) | |
| 42-187, gnl|loxAfr1|scaffold_13138 (28029-28209) | |
| 42-187, gnl|mm7|chr4 (40329190-40329354) | |
| 42-187, gnl|Mm7|chr4 (40329199-40329344) | |
| 42-187, gnl|monDom2|scaffold_19 (31977820-31977998) | |
| 42-187, gnl|oryCun1|scaffold_158649 (1880-2053) | |
| 42-187, gnl|panTro1|chr11 (32920801-32920980) | |
| 42-187, gnl|rheMac2|chr15 (44790402-44790223) | |
| 42-187, gnl|rn3|chr5 (57585095-57585265) | |
| 42-187, gnl|tetNig1|chrUn_random (114647983-114648146) | |
| 42-187, gnl|xenTro1|scaffold_28 (2105279-2105454) | |
| 190-314, gnl|bosTau2|chr8 (6288151-6288027) | |
| 190-314, gnl|Hg17|chr9 (32430462-32430586) | |
| 190-314, gnl|Mm7|chr4 (40332201-40332325) | |
| 498-1384, gnl|bosTau2|chr8 (6284683-6283825) | |
| 498-1384, gnl|Hg17|chr9 (32439994-32440834) | |
| 498-1384, gnl|Mm7|chr4 (40336015-40336801) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| pgl (0.473934) | |
| tes (0.415628) | |
| sin (0.349895) | |
| duo (0.345602) | |
| fat (0.294855) | |
| cte (0.29274) | |
| ute (0.265569) | |
| cly (0.241284) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| lun (0.150489) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| che (0.136314) | |
| eru (0.120048) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.473934) | |
| tes (0.415628) | |
| sin (0.349895) | |
| duo (0.345602) | |
| fat (0.294855) | |
| cte (0.29274) | |
| ute (0.265569) | |
| cly (0.241284) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| lun (0.150489) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| che (0.136314) | |
| eru (0.120048) | |
| spc (0.113366) | |
| ldo (0.0970026) |