Non-Coding RNA Search

Ss1.1-Lym1-jns58_C06.f.5

Sequence:


               
               CACAAGCAACATATTTACTTTCCAAAATTAGTCTGCTCAGCAAGTAAACAAGCCTTTAGA
GAAATCTGATTTCCCTGCAGATTACCTGACAGGATTAGCACAAAGGCCCAGTTTGTGTAC
TTCTGGGTTAGTTAAGCAGATAGCTCTGCTGACTGTGAAGGGTGTCACATAGCAGGGTCA
GGGCAGCTTTTTCCATCCTCCTTTTTCTACTCCATCTTACTCAGTGCCAAGTCAACCTGG
GAAGCTTCAGTCCAGAAGTGGCCCCCTGGGTAGCCTTGTGTATCCTGTTCTCCACAACAC
TGGGATACAAAGAAGCTGGAGTCAAAGTATATCCTGGTCAGGTTCTCAGGCTCCTGGCCC
ACATCTCTGAAAAGGGACCCAGCTGGTGGAGACAAGAGATATCAAGAAGCAGGGGGTAGG
CCAGGGCTCGGTCACCAAGTCCAGGAAGGACAATGGTGTAAGGCCTTCTAGGGCCCTCGG
AAGTGTAGGGCATGAGAAGGGAGGCAAGAGACACTAGGACCGGGAAACCTGGAGATTGGT
ATAGTGAAAGGGCTAAGAGTCTGGCCAGGCGAGGAAGGTTCTGCAGATCTGAGACGGTGA
TGACGGCACGCCCAGATGATTCCAGTCCTGGAGTTTAGGAAGATATGCGCTCTGGTGCAT
GAAGAAGGCGGGGGAAAGAATCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAAGCAACATATTTACTTTCCAAAATTAGTCTGCTCAGCAAGTAAACAAGCCTTTAGA
GAAATCTGATTTCCCTGCAGATTACCTGACAGGATTAGCACAAAGGCCCAGTTTGTGTAC
TTCTGGGTTAGTTAAGCAGATAGCTCTGCTGACTGTGAAGGGTGTCACATAGCAGGGTCA
GGGCAGCTTTTTCCATCCTCCTTTTTCTACTCCATCTTACTCAGTGCCAAGTCAACCTGG
GAAGCTTCAGTCCAGAAGTGGCCCCCTGGGTAGCCTTGTGTATCCTGTTCTCCACAACAC
TGGGATACAAAGAAGCTGGAGTCAAAGTATATCCTGGTCAGGTTCTCAGGCTCCTGGCCC
ACATCTCTGAAAAGGGACCCAGCTGGTGGAGACAAGAGATATCAAGAAGCAGGGGGTAGG
CCAGGGCTCGGTCACCAAGTCCAGGAAGGACAATGGTGTAAGGCCTTCTAGGGCCCTCGG
AAGTGTAGGGCATGAGAAGGGAGGCAAGAGACACTAGGACCGGGAAACCTGGAGATTGGT
ATAGTGAAAGGGCTAAGAGTCTGGCCAGGCGAGGAAGGTTCTGCAGATCTGAGACGGTGA
TGACGGCACGCCCAGATGATTCCAGTCCTGGAGTTTAGGAAGATATGCGCTCTGGTGCAT
GAAGAAGGCGGGGGAAAGAATCCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-187, + strand, RNAz p=0.567045
               

               
               430-529, - strand, RNAz p=0.919617

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-187, + strand, RNAz p=0.567045
               

               
               430-529, - strand, RNAz p=0.919617

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr7 (26627500-26626785)
               

               
               1-684, gnl|Hg17|chr5 (176383466-176382732)
               

               
               1-684, gnl|Mm7|chr13 (54188950-54188105)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr7 (26627500-26626785)
               

               
               1-684, gnl|Hg17|chr5 (176383466-176382732)
               

               
               1-684, gnl|Mm7|chr13 (54188950-54188105)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	40-187, + strand, RNAz p=0.567045
	430-529, - strand, RNAz p=0.919617

	1-684, gnl\|bosTau2\|chr7 (26627500-26626785)
	1-684, gnl\|Hg17\|chr5 (176383466-176382732)
	1-684, gnl\|Mm7\|chr13 (54188950-54188105)