Non-Coding RNA Search

Ss1.1-Lym1-jns58_D05.f.5

Sequence:


               
               CTAGATTGTAATATTTAAGGTCGAATTTCGACCTGTGGTACACAGCTGTGCTGTGGCTCA
GTCAGCAACCTCAGAACTCTGAAAAAAAAAAAAACAAAAAAACAAAACGAAAAAAAAAAA
ACATGCACCTGTTTCACTGTGAATAGTGAATGTAAAGGAAAGAAAGGAAAAACTGAAAGC
TTGTTCTATCACAGGTATGAGCTGCTATGATACATGAAGAACATTCCATGAAGTATGTTT
TAAAACCTTGTTATATCTGAGAGGCTTTAAAAGCCGACTTAACTGTTTCAGGGCAACCGC
GGTACAGACGTGGTCTCTGTGAGACTTCCACCTGACCCCAGTTTTAAGTGGTACGAATGT
TGTGCATTTAATGTTAAAGGACAGTCTGCAATAATAAAGTAAGTAGCCAACGTGGGTGCC
CAGCAGTGCTGAGACCTGGCTGCTCTATTGTAAGCTTTGGAAACACAATTTATGCAACAG
ATGTCCAGATATGATTCTATTTATGGAAAAAGTTTATATGTATTTTACAAATGGTTTTAC
CATCTTATATTAAAATGACCTTTTGACAGGTGTGCACTGTTTTGTCTCCAGTGAGCACAT
ACCATGCGGATTTTATATGTACATCAGTAGTGTGAATCCACTGGCACAGTGTGTGTAAAT
GCCAGATGTGGTGAGATTTTATCTTATAAATGTGATCAGATAAAATAACTCCTGACAGAA
ACTGTAAGGAAACCAGCTGAATGTTTGACCTGATGACTGATGTTGTATGGTTTATGTTAA
ATGTATATTCTTTTAATCAATGAATAAAGCATTAAAAAGTGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGATTGTAATATTTAAGGTCGAATTTCGACCTGTGGTACACAGCTGTGCTGTGGCTCA
GTCAGCAACCTCAGAACTCTGAAAAAAAAAAAAACAAAAAAACAAAACGAAAAAAAAAAA
ACATGCACCTGTTTCACTGTGAATAGTGAATGTAAAGGAAAGAAAGGAAAAACTGAAAGC
TTGTTCTATCACAGGTATGAGCTGCTATGATACATGAAGAACATTCCATGAAGTATGTTT
TAAAACCTTGTTATATCTGAGAGGCTTTAAAAGCCGACTTAACTGTTTCAGGGCAACCGC
GGTACAGACGTGGTCTCTGTGAGACTTCCACCTGACCCCAGTTTTAAGTGGTACGAATGT
TGTGCATTTAATGTTAAAGGACAGTCTGCAATAATAAAGTAAGTAGCCAACGTGGGTGCC
CAGCAGTGCTGAGACCTGGCTGCTCTATTGTAAGCTTTGGAAACACAATTTATGCAACAG
ATGTCCAGATATGATTCTATTTATGGAAAAAGTTTATATGTATTTTACAAATGGTTTTAC
CATCTTATATTAAAATGACCTTTTGACAGGTGTGCACTGTTTTGTCTCCAGTGAGCACAT
ACCATGCGGATTTTATATGTACATCAGTAGTGTGAATCCACTGGCACAGTGTGTGTAAAT
GCCAGATGTGGTGAGATTTTATCTTATAAATGTGATCAGATAAAATAACTCCTGACAGAA
ACTGTAAGGAAACCAGCTGAATGTTTGACCTGATGACTGATGTTGTATGGTTTATGTTAA
ATGTATATTCTTTTAATCAATGAATAAAGCATTAAAAAGTGAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-157, - strand, RNAz p=0.997317
               

               
               516-755, + strand, RNAz p=0.942313

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-157, - strand, RNAz p=0.997317
               

               
               516-755, + strand, RNAz p=0.942313

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1-81, CJ265460 RIKEN full-length enriched mouse cDNA library, C57BL/6J 
(dbj|CJ265460.1|), blast E-value=9e-37, identity=100% 
               

               
               1-81, ILLUMIGEN_MCQ_23707 Katze_MMSP Macaca mulatta cDNA clone (gb|CN645222.1|), 
blast E-value=9e-37, identity=100% 
               

               
               1-81, DG2-19j24 DG2-brain Canis familiaris cDNA 3', mRNA sequence 
(gb|CO588134.1|), blast E-value=9e-37, identity=100% 
               

               
               1-81, DG11-160j18 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO682899.1|), blast E-value=9e-37, identity=100% 
               

               
               1-81, DG11-262o15 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO689686.1|), blast E-value=9e-37, identity=100% 
               

               
               1-81, LIB3579-016-Q1-K1-G12 LIB3579 Canis familiaris cDNA clone 
(gb|DN349575.1|), blast E-value=9e-37, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-81, CJ265460 RIKEN full-length enriched mouse cDNA library, C57BL/6J 
(dbj|CJ265460.1|), blast E-value=9e-37, identity=100% 
               

               
               1-81, ILLUMIGEN_MCQ_23707 Katze_MMSP Macaca mulatta cDNA clone (gb|CN645222.1|), 
blast E-value=9e-37, identity=100% 
               

               
               1-81, DG2-19j24 DG2-brain Canis familiaris cDNA 3', mRNA sequence 
(gb|CO588134.1|), blast E-value=9e-37, identity=100% 
               

               
               1-81, DG11-160j18 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO682899.1|), blast E-value=9e-37, identity=100% 
               

               
               1-81, DG11-262o15 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO689686.1|), blast E-value=9e-37, identity=100% 
               

               
               1-81, LIB3579-016-Q1-K1-G12 LIB3579 Canis familiaris cDNA clone 
(gb|DN349575.1|), blast E-value=9e-37, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_203301, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_203301, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-822, gnl|bosTau2|chr21 (33427186-33428010)
               

               
               1-822, gnl|Hg17|chr14 (38937529-38936710)
               

               
               1-822, gnl|Mm7|chr12 (57136366-57135549)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-822, gnl|bosTau2|chr21 (33427186-33428010)
               

               
               1-822, gnl|Hg17|chr14 (38937529-38936710)
               

               
               1-822, gnl|Mm7|chr12 (57136366-57135549)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               ova (0.516529)
               

               
               aor (0.390549)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.516529)
               

               
               aor (0.390549)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-157, - strand, RNAz p=0.997317
	516-755, + strand, RNAz p=0.942313

	1-81, CJ265460 RIKEN full-length enriched mouse cDNA library, C57BL/6J (dbj\|CJ265460.1\|), blast E-value=9e-37, identity=100%
	1-81, ILLUMIGEN_MCQ_23707 Katze_MMSP Macaca mulatta cDNA clone (gb\|CN645222.1\|), blast E-value=9e-37, identity=100%
	1-81, DG2-19j24 DG2-brain Canis familiaris cDNA 3', mRNA sequence (gb\|CO588134.1\|), blast E-value=9e-37, identity=100%
	1-81, DG11-160j18 DG11-kidney Canis familiaris cDNA 3', mRNA sequence (gb\|CO682899.1\|), blast E-value=9e-37, identity=100%
	1-81, DG11-262o15 DG11-kidney Canis familiaris cDNA 3', mRNA sequence (gb\|CO689686.1\|), blast E-value=9e-37, identity=100%
	1-81, LIB3579-016-Q1-K1-G12 LIB3579 Canis familiaris cDNA clone (gb\|DN349575.1\|), blast E-value=9e-37, identity=100%

	1-822, gnl\|bosTau2\|chr21 (33427186-33428010)
	1-822, gnl\|Hg17\|chr14 (38937529-38936710)
	1-822, gnl\|Mm7\|chr12 (57136366-57135549)

	ova (0.516529)
	aor (0.390549)
	vin (0.332557)
	sme (0.305437)
	cte (0.29274)
	mgm (0.180343)
	sin (0.174948)
	fco (0.157208)
	fat (0.147427)
	ste (0.135208)
	kid (0.129735)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)