Non-Coding RNA Search

Ss1.1-Lym1-jns60_E02.f.5

Sequence:


               
               TTTTTCCTTTCTTAGCTTTTTCTGCCATTACTAATACAAAGTGGTATCCAAAGTTCTTAA
TAAGAGATTTATTAAAATATTCCTCATTTTCAGCACTTACACTGTTTTGGTATACAGGGT
TAGATTGGGCAAGGAATTTTAACTTTGTATAATTAGATTTTATACTTAAAGTCACTGGGA
ATAGTGAGGACAATTTGTGGATGTTCTTATTTTGTAATACATTTATTCCTACATGTGTTA
TGAAATTCACTTATTATGAATTTTCAACGTACTTGCCATAGGAGACAAAGTATCCATAAA
TGCTGTAACGTATCAGTCACTAAAATTCGTGTTAAGATTGTCTTGGTTTCTTAGAAGAGG
TTGTAATGACTTCTTACCTAGTGATTTAATGTAGCCAGCACTGAGGGCTTTTACTGGTAG
TTCAGTCAAACAGCTGTACGTAGCATGAAGCACGGGCAAGGATTAAGATTTTGAGAACAT
TCCTACTCATATAAGTGGAGAAATCCATCCAGTGGGAATCTAAATATTTGTACTGATACT
GTGAAAGCAACCTTAAGGTTTTTAAGAAGACTGCTGAAACTGGGTACTTTGCATCCTTTC
AACAAATATCTTTCCGTGGCGTTTGAGAGCAAAAAGGCCAGAAACATAGTAATTACTAAA
TCATGAGGCTTTGCTTTTTGTTTGCTTTTTAAGTAGAAAAACATGTTGGCAATATTGAAT
TTAGGAGTTGATTGAGATGAGATACATCTAACTTTACTCTTTTGGTCATTCCACTTATTA
AAGATACGCTCGTCAAGAAGTTTTTGATTTTAAAGACCACAATGGAAGCTTGCTCATTTA
AAACTAGTAATACTATTTTCATTCAGTGATGTTGGATGTGTATGATAGTAAGTAATCCCA
ATAAATTTCGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCCTTTCTTAGCTTTTTCTGCCATTACTAATACAAAGTGGTATCCAAAGTTCTTAA
TAAGAGATTTATTAAAATATTCCTCATTTTCAGCACTTACACTGTTTTGGTATACAGGGT
TAGATTGGGCAAGGAATTTTAACTTTGTATAATTAGATTTTATACTTAAAGTCACTGGGA
ATAGTGAGGACAATTTGTGGATGTTCTTATTTTGTAATACATTTATTCCTACATGTGTTA
TGAAATTCACTTATTATGAATTTTCAACGTACTTGCCATAGGAGACAAAGTATCCATAAA
TGCTGTAACGTATCAGTCACTAAAATTCGTGTTAAGATTGTCTTGGTTTCTTAGAAGAGG
TTGTAATGACTTCTTACCTAGTGATTTAATGTAGCCAGCACTGAGGGCTTTTACTGGTAG
TTCAGTCAAACAGCTGTACGTAGCATGAAGCACGGGCAAGGATTAAGATTTTGAGAACAT
TCCTACTCATATAAGTGGAGAAATCCATCCAGTGGGAATCTAAATATTTGTACTGATACT
GTGAAAGCAACCTTAAGGTTTTTAAGAAGACTGCTGAAACTGGGTACTTTGCATCCTTTC
AACAAATATCTTTCCGTGGCGTTTGAGAGCAAAAAGGCCAGAAACATAGTAATTACTAAA
TCATGAGGCTTTGCTTTTTGTTTGCTTTTTAAGTAGAAAAACATGTTGGCAATATTGAAT
TTAGGAGTTGATTGAGATGAGATACATCTAACTTTACTCTTTTGGTCATTCCACTTATTA
AAGATACGCTCGTCAAGAAGTTTTTGATTTTAAAGACCACAATGGAAGCTTGCTCATTTA
AAACTAGTAATACTATTTTCATTCAGTGATGTTGGATGTGTATGATAGTAAGTAATCCCA
ATAAATTTCGTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               11-912, gnl|bosTau2|chr27 (16856881-16857765)
               

               
               11-912, gnl|Hg17|chr1 (47555629-47556516)
               

               
               11-912, gnl|Mm7|chr4 (114336743-114335792)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-912, gnl|bosTau2|chr27 (16856881-16857765)
               

               
               11-912, gnl|Hg17|chr1 (47555629-47556516)
               

               
               11-912, gnl|Mm7|chr4 (114336743-114335792)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               ski (0.440205)
               

               
               lin (0.291206)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.440205)
               

               
               lin (0.291206)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	11-912, gnl\|bosTau2\|chr27 (16856881-16857765)
	11-912, gnl\|Hg17\|chr1 (47555629-47556516)
	11-912, gnl\|Mm7\|chr4 (114336743-114335792)

	ski (0.440205)
	lin (0.291206)
	thg (0.253582)
	aor (0.195274)
	mgm (0.180343)
	nca (0.136874)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)