Ss1.1-Lym1-jns60_G12.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAACTGAAGTCTCTTTGCTGCCTTTGGAATCTTTGGAGAGAGCCCACTGTCACGCATTCT TTGTATAGGAGCACCTGCTGGTTCTATCATAATGAAATGCCTGGTTTGGGTGCTCCTCCT GTGCTCCTCAGCGATGGCACAGCTGCACAGAGACCCCACCTTGGATCGTCACTGGGATCT CTGGAAGAAAACCTATGGAAAACAATACAAGGAAAAGAATGAGGAAGTAGCACGGCGTCT CATCTGGGAAAAGAACCTAAAAACTGTAATGCTTCACAATCTGGAGCATTCGATGGGAAT GCATTCATATGATCTAGGCATGAACCACCTGGGAGACATGACCAGTGAAGAAGTGATATC ATTGATGAGTTGCGTGAGAGTTCCCAGCCAATGGCCGAGAAATGTCACTTACAAGTCAAA CCCTAATCAGAAATTGCCTGATTCTATGGACTGGAGAGAGAAGGGGTGTGTTACTGAAGT GAAATACCAGGGTTCTTGTGGTTCTTGTTGGGCTTTCAGCGCTGTGGGAGCTCTGGAAGC ACAAGTGAAGATGAAAACAGGAAGGCTGGTGTCTCTGAGTGCACAGAACCTGGTGGATTG CTCAACTGAAAAATACAGGAATAAAGGCTGCAATGGCGGCTTCATGACAGAGGCTTTCCA ATATATCATTGATAACAACGGCATCGATTCAGAAGCCTCCTATCCCTACAAAGCCGTGGA TGGAAAATGCAAGTATGACTCAAAAAATCGAGCTGCCACGTGTTCAAGGTATACTGAACT TCCTTTCGCCGATGAATATGCCTTAAAAGAAGCTGTGGCCAATAAGGGACCTGTGTCCGT TGCTATAGATGCGAAGCATTCTTCTTTCTTCTTCTACAGGAGTGGTGTCTACTATGACCC CTCCTGTACTCAGAATGTGAATCATGGTGTACTAGTGGTCGGCTACGGTAACCTTAATGG GAAAGACTACTGGCTTGTGAAAAACAGCTGGGGACTCAACTTTGGTGACGGAGGATACAT ACGGATGGCAAGAAATAGTGAAAATCACTGTGGGATTGCTAATTATCCCTCTTACCCAGA AATCTAGAGGATATCTTCATTTTATAACATTTCAAGAAAGAAAAACACTTTCTCATTATT TTACCTGCTGTAACTAGAAGAAACAAGTGTGTCATGATCAATGTATATCTACCATACTAA CAGAAAATATAGTTTGACGCATCTACTTTTTTTACTTTGCAGATCTTGAGGGAAAGTTTG CTAAGTAAATTAATAATGTACTATAGATATAACTGTATGAAAATGGTCAACCTGAAACAA TATGTCATGTTTGTCATTGTCTTATTTTATTTGTTCATTTTAGTCCCCTGATTTCCTGTT GAACCTTAATGGCATATAAATGGTTAATAAATATTTGTCTTTTCAATTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAACTGAAGTCTCTTTGCTGCCTTTGGAATCTTTGGAGAGAGCCCACTGTCACGCATTCT TTGTATAGGAGCACCTGCTGGTTCTATCATAATGAAATGCCTGGTTTGGGTGCTCCTCCT GTGCTCCTCAGCGATGGCACAGCTGCACAGAGACCCCACCTTGGATCGTCACTGGGATCT CTGGAAGAAAACCTATGGAAAACAATACAAGGAAAAGAATGAGGAAGTAGCACGGCGTCT CATCTGGGAAAAGAACCTAAAAACTGTAATGCTTCACAATCTGGAGCATTCGATGGGAAT GCATTCATATGATCTAGGCATGAACCACCTGGGAGACATGACCAGTGAAGAAGTGATATC ATTGATGAGTTGCGTGAGAGTTCCCAGCCAATGGCCGAGAAATGTCACTTACAAGTCAAA CCCTAATCAGAAATTGCCTGATTCTATGGACTGGAGAGAGAAGGGGTGTGTTACTGAAGT GAAATACCAGGGTTCTTGTGGTTCTTGTTGGGCTTTCAGCGCTGTGGGAGCTCTGGAAGC ACAAGTGAAGATGAAAACAGGAAGGCTGGTGTCTCTGAGTGCACAGAACCTGGTGGATTG CTCAACTGAAAAATACAGGAATAAAGGCTGCAATGGCGGCTTCATGACAGAGGCTTTCCA ATATATCATTGATAACAACGGCATCGATTCAGAAGCCTCCTATCCCTACAAAGCCGTGGA TGGAAAATGCAAGTATGACTCAAAAAATCGAGCTGCCACGTGTTCAAGGTATACTGAACT TCCTTTCGCCGATGAATATGCCTTAAAAGAAGCTGTGGCCAATAAGGGACCTGTGTCCGT TGCTATAGATGCGAAGCATTCTTCTTTCTTCTTCTACAGGAGTGGTGTCTACTATGACCC CTCCTGTACTCAGAATGTGAATCATGGTGTACTAGTGGTCGGCTACGGTAACCTTAATGG GAAAGACTACTGGCTTGTGAAAAACAGCTGGGGACTCAACTTTGGTGACGGAGGATACAT ACGGATGGCAAGAAATAGTGAAAATCACTGTGGGATTGCTAATTATCCCTCTTACCCAGA AATCTAGAGGATATCTTCATTTTATAACATTTCAAGAAAGAAAAACACTTTCTCATTATT TTACCTGCTGTAACTAGAAGAAACAAGTGTGTCATGATCAATGTATATCTACCATACTAA CAGAAAATATAGTTTGACGCATCTACTTTTTTTACTTTGCAGATCTTGAGGGAAAGTTTG CTAAGTAAATTAATAATGTACTATAGATATAACTGTATGAAAATGGTCAACCTGAAACAA TATGTCATGTTTGTCATTGTCTTATTTTATTTGTTCATTTTAGTCCCCTGATTTCCTGTT GAACCTTAATGGCATATAAATGGTTAATAAATATTTGTCTTTTCAATTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1025-1138, - strand, RNAz p=0.920466 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1025-1138, - strand, RNAz p=0.920466 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 216-340, gnl|bosTau2|chr3 (16803500-16803624) | |
| 216-340, gnl|canFam2|chr17 (62987197-62987356) | |
| 216-340, gnl|danRer3|chr12 (10175267-10175129) | |
| 216-340, gnl|dasNov1|scaffold_46919 (12528-12364) | |
| 216-340, gnl|echTel1|scaffold_324356 (101622-101463) | |
| 216-340, gnl|fr1|chrUn (275683810-275683644) | |
| 216-340, gnl|galGal2|chrZ_random (13965659-13965508) | |
| 216-340, gnl|hg17|chr1 (147543402-147543567) | |
| 216-340, gnl|Hg17|chr1 (147543531-147543407) | |
| 216-340, gnl|mm7|chr3 (95412799-95412649) | |
| 216-340, gnl|Mm7|chr3 (95412668-95412792) | |
| 216-340, gnl|monDom2|scaffold_44 (3935222-3935394) | |
| 216-340, gnl|oryCun1|scaffold_131676 (4864-4699) | |
| 216-340, gnl|panTro1|chr1 (129277356-129277521) | |
| 216-340, gnl|rheMac2|chr1 (129160163-129160328) | |
| 216-340, gnl|rn3|chr2 (190395528-190395373) | |
| 216-340, gnl|tetNig1|chrUn_random (41085505-41085651) | |
| 216-340, gnl|xenTro1|scaffold_122 (1783827-1783971) | |
| 489-719, gnl|bosTau2|chr3 (16806332-16806562) | |
| 489-719, gnl|Hg17|chr1 (147537559-147537329) | |
| 489-719, gnl|Mm7|chr3 (95419280-95419513) | |
| 986-1426, gnl|bosTau2|chr3 (16821349-16821790) | |
| 986-1426, gnl|Hg17|chr1 (147518696-147517936) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 216-340, gnl|bosTau2|chr3 (16803500-16803624) | |
| 216-340, gnl|canFam2|chr17 (62987197-62987356) | |
| 216-340, gnl|danRer3|chr12 (10175267-10175129) | |
| 216-340, gnl|dasNov1|scaffold_46919 (12528-12364) | |
| 216-340, gnl|echTel1|scaffold_324356 (101622-101463) | |
| 216-340, gnl|fr1|chrUn (275683810-275683644) | |
| 216-340, gnl|galGal2|chrZ_random (13965659-13965508) | |
| 216-340, gnl|hg17|chr1 (147543402-147543567) | |
| 216-340, gnl|Hg17|chr1 (147543531-147543407) | |
| 216-340, gnl|mm7|chr3 (95412799-95412649) | |
| 216-340, gnl|Mm7|chr3 (95412668-95412792) | |
| 216-340, gnl|monDom2|scaffold_44 (3935222-3935394) | |
| 216-340, gnl|oryCun1|scaffold_131676 (4864-4699) | |
| 216-340, gnl|panTro1|chr1 (129277356-129277521) | |
| 216-340, gnl|rheMac2|chr1 (129160163-129160328) | |
| 216-340, gnl|rn3|chr2 (190395528-190395373) | |
| 216-340, gnl|tetNig1|chrUn_random (41085505-41085651) | |
| 216-340, gnl|xenTro1|scaffold_122 (1783827-1783971) | |
| 489-719, gnl|bosTau2|chr3 (16806332-16806562) | |
| 489-719, gnl|Hg17|chr1 (147537559-147537329) | |
| 489-719, gnl|Mm7|chr3 (95419280-95419513) | |
| 986-1426, gnl|bosTau2|chr3 (16821349-16821790) | |
| 986-1426, gnl|Hg17|chr1 (147518696-147517936) |
| Expressed library(ies): 46 entry(ies) | More info |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
| spl (4.5819) | |
| liv (3.21826) | |
| lin (3.05766) | |
| rec (2.94219) | |
| mga (2.08267) | |
| tra (1.35401) | |
| lun (1.20391) | |
| cty (1.14488) | |
| thg (1.01433) | |
| nco (0.970403) | |
| sin (0.874738) | |
| lnt (0.853849) | |
| nje (0.8296) | |
| cmu (0.745573) | |
| mgp (0.692042) | |
| col (0.585023) | |
| jca (0.569801) | |
| ova (0.516529) | |
| fat (0.442282) | |
| ski (0.440205) | |
| csk (0.422238) | |
| aor (0.390549) | |
| kid (0.389206) | |
| sug (0.381874) | |
| cut (0.339847) | |
| csp (0.322373) | |
| isp (0.300752) | |
| jej (0.296765) | |
| fce (0.271592) | |
| ret (0.257467) | |
| clu (0.239292) | |
| med (0.232504) | |
| ece (0.229305) | |
| hea (0.204499) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (4.5819) | |
| liv (3.21826) | |
| lin (3.05766) | |
| rec (2.94219) | |
| mga (2.08267) | |
| tra (1.35401) | |
| lun (1.20391) | |
| cty (1.14488) | |
| thg (1.01433) | |
| nco (0.970403) | |
| sin (0.874738) | |
| lnt (0.853849) | |
| nje (0.8296) | |
| cmu (0.745573) | |
| mgp (0.692042) | |
| col (0.585023) | |
| jca (0.569801) | |
| ova (0.516529) | |
| fat (0.442282) | |
| ski (0.440205) | |
| csk (0.422238) | |
| aor (0.390549) | |
| kid (0.389206) | |
| sug (0.381874) | |
| cut (0.339847) | |
| csp (0.322373) | |
| isp (0.300752) | |
| jej (0.296765) | |
| fce (0.271592) | |
| ret (0.257467) | |
| clu (0.239292) | |
| med (0.232504) | |
| ece (0.229305) | |
| hea (0.204499) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |