Ss1.1-Lym1-jns61_F09.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCCACTGCGCGGAGGCCCGGGTGGGTCTGCGGGGGCTGGGGTGCCTCGCGCCCGGGGT GCGCGCCCCGGCGGCCCCGCCATGCGCCCCCCGCGCCCCCACGCCTCGCTGCTAGAGCTC CTGGGGGTGCTTCTGGCCGCGTCCCTCGCGGCCGCCGAGGCGCCGCACCTGGTGCGCGTG GACGCGGCCCGCGCGCTGGGGCCCCTGCGACCCTTCTGGAGGAGCACCGGCTTCTGTCCT CCCCTGCCGCACAGCCAGGCTCACCGGTATGACCTCAGCTGGGACCAGCAGCTCAACCTG GCCTACGTGGGCGCCGTCCCTCATGGTGGCATCCAGCAGGTTCGGGCCCACTGGCTGCTG GGCCTCGTCACAGCCAGGAGGTCAGCTGGACAGGGACTGAGCTACAATTTCACCCACTTG GATCGATACCTGGACCTTCTCAGGGAGAACCAGCTCCTCCCAGGCTTTGAGCTGATGGGC AGCCCCTCTGGACACTTCACGGACTTTGAGGACAAGCAGCAGGTGTTCGAGTGGAGGAAC CTGGTCTCGCTCCTGGCTAGGAGATACGTTGGTAGGTACGGACTCAAGCACGTTTCCAAG TGGAATTTTGAGACGTGGAACGAGCCGGACCACCACGACTTTGACAACGTGTCCATGACC TTGCAAGGCTTCTTGAACTACTACGACGCCTGCTCCGAGGGTCTGCGAGCTGCCAGCCCA GCTCTGCGCCTGGGTGGTCCTGGCGACTCCTTCCATGACCCACCACGCTCCCCATTGTGC TGGGGCCTCCTGGCGCACTGTCACAACGGAACCAATTTCTTCACCGGGGAGGTGGGCGTG CGGCTAGACTTCATCGCCCTCCATAAGAAGGGCGCGGGCAGCTCCATCTACATCCTGGAG CAGGAGGTGGCGGTGATGCAGCAGATACAGCGGCTCTTCCCCAAGTTCACGGACACCCCC ATTTACAACGACGAGGCTGACCCGCTGGTGGGCTGGTCTCTGCCACAGCCCTGGAGGGCC GATGTGACCTACGCAGCCATGGTTGTGAAGGTCATCGCGCAGCACCAGAACCTGCTGGTG GCCAACACCAGCTCCTCCATCCGCTACACGCTGCTGAGCAACGACAATGCCTTCCTGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCCACTGCGCGGAGGCCCGGGTGGGTCTGCGGGGGCTGGGGTGCCTCGCGCCCGGGGT GCGCGCCCCGGCGGCCCCGCCATGCGCCCCCCGCGCCCCCACGCCTCGCTGCTAGAGCTC CTGGGGGTGCTTCTGGCCGCGTCCCTCGCGGCCGCCGAGGCGCCGCACCTGGTGCGCGTG GACGCGGCCCGCGCGCTGGGGCCCCTGCGACCCTTCTGGAGGAGCACCGGCTTCTGTCCT CCCCTGCCGCACAGCCAGGCTCACCGGTATGACCTCAGCTGGGACCAGCAGCTCAACCTG GCCTACGTGGGCGCCGTCCCTCATGGTGGCATCCAGCAGGTTCGGGCCCACTGGCTGCTG GGCCTCGTCACAGCCAGGAGGTCAGCTGGACAGGGACTGAGCTACAATTTCACCCACTTG GATCGATACCTGGACCTTCTCAGGGAGAACCAGCTCCTCCCAGGCTTTGAGCTGATGGGC AGCCCCTCTGGACACTTCACGGACTTTGAGGACAAGCAGCAGGTGTTCGAGTGGAGGAAC CTGGTCTCGCTCCTGGCTAGGAGATACGTTGGTAGGTACGGACTCAAGCACGTTTCCAAG TGGAATTTTGAGACGTGGAACGAGCCGGACCACCACGACTTTGACAACGTGTCCATGACC TTGCAAGGCTTCTTGAACTACTACGACGCCTGCTCCGAGGGTCTGCGAGCTGCCAGCCCA GCTCTGCGCCTGGGTGGTCCTGGCGACTCCTTCCATGACCCACCACGCTCCCCATTGTGC TGGGGCCTCCTGGCGCACTGTCACAACGGAACCAATTTCTTCACCGGGGAGGTGGGCGTG CGGCTAGACTTCATCGCCCTCCATAAGAAGGGCGCGGGCAGCTCCATCTACATCCTGGAG CAGGAGGTGGCGGTGATGCAGCAGATACAGCGGCTCTTCCCCAAGTTCACGGACACCCCC ATTTACAACGACGAGGCTGACCCGCTGGTGGGCTGGTCTCTGCCACAGCCCTGGAGGGCC GATGTGACCTACGCAGCCATGGTTGTGAAGGTCATCGCGCAGCACCAGAACCTGCTGGTG GCCAACACCAGCTCCTCCATCCGCTACACGCTGCTGAGCAACGACAATGCCTTCCTGAGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 65-236, gnl|bosTau2|chr6 (63563647-63563476) | |
| 65-236, gnl|echTel1|scaffold_168535 (17-233) | |
| 65-236, gnl|hg17|chr4 (970598-970795) | |
| 65-236, gnl|Hg17|chr4 (970691-970860) | |
| 65-236, gnl|loxAfr1|scaffold_140728 (1409-1187) | |
| 65-236, gnl|mm7|chr5 (107850195-107850384) | |
| 65-236, gnl|Mm7|chr5 (107850276-107850449) | |
| 65-236, gnl|oryCun1|scaffold_62021 (8-162) | |
| 65-236, gnl|panTro1|chr3 (1050894-1051091) | |
| 65-236, gnl|rheMac2|chr1 (2976551-2976354) | |
| 65-236, gnl|rn3|chr14 (1587553-1587379) | |
| 65-236, gnl|xenTro1|scaffold_4660 (12152-11942) | |
| 238-381, gnl|bosTau2|chr6 (63562765-63562622) | |
| 238-381, gnl|Hg17|chr4 (971428-971571) | |
| 238-381, gnl|Mm7|chr5 (107851052-107851195) | |
| 461-581, gnl|bosTau2|chr6 (63552618-63552498) | |
| 461-581, gnl|canFam2|chr3 (94359535-94359440) | |
| 461-581, gnl|danRer3|chr5 (1194082-1193996) | |
| 461-581, gnl|echTel1|scaffold_294058 (8584-8684) | |
| 461-581, gnl|fr1|chrUn (267787640-267787554) | |
| 461-581, gnl|galGal2|chrZ (25428898-25428810) | |
| 461-581, gnl|hg17|chr4 (984485-984581) | |
| 461-581, gnl|Hg17|chr4 (984497-984616) | |
| 461-581, gnl|loxAfr1|scaffold_57276 (661-559) | |
| 461-581, gnl|mm7|chr5 (107860621-107860717) | |
| 461-581, gnl|Mm7|chr5 (107860633-107860755) | |
| 461-581, gnl|monDom2|scaffold_10 (47323111-47323018) | |
| 461-581, gnl|panTro1|chr3 (1064674-1064770) | |
| 461-581, gnl|rheMac2|chr1 (2963561-2963465) | |
| 461-581, gnl|rn3|chr14 (1576875-1576779) | |
| 461-581, gnl|tetNig1|chr12 (12285326-12285240) | |
| 461-581, gnl|xenTro1|scaffold_6889 (8570-8480) | |
| 869-1052, gnl|bosTau2|chr6 (63551728-63551545) | |
| 869-1052, gnl|Hg17|chr4 (985598-985781) | |
| 869-1052, gnl|Mm7|chr5 (107861501-107861684) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 65-236, gnl|bosTau2|chr6 (63563647-63563476) | |
| 65-236, gnl|echTel1|scaffold_168535 (17-233) | |
| 65-236, gnl|hg17|chr4 (970598-970795) | |
| 65-236, gnl|Hg17|chr4 (970691-970860) | |
| 65-236, gnl|loxAfr1|scaffold_140728 (1409-1187) | |
| 65-236, gnl|mm7|chr5 (107850195-107850384) | |
| 65-236, gnl|Mm7|chr5 (107850276-107850449) | |
| 65-236, gnl|oryCun1|scaffold_62021 (8-162) | |
| 65-236, gnl|panTro1|chr3 (1050894-1051091) | |
| 65-236, gnl|rheMac2|chr1 (2976551-2976354) | |
| 65-236, gnl|rn3|chr14 (1587553-1587379) | |
| 65-236, gnl|xenTro1|scaffold_4660 (12152-11942) | |
| 238-381, gnl|bosTau2|chr6 (63562765-63562622) | |
| 238-381, gnl|Hg17|chr4 (971428-971571) | |
| 238-381, gnl|Mm7|chr5 (107851052-107851195) | |
| 461-581, gnl|bosTau2|chr6 (63552618-63552498) | |
| 461-581, gnl|canFam2|chr3 (94359535-94359440) | |
| 461-581, gnl|danRer3|chr5 (1194082-1193996) | |
| 461-581, gnl|echTel1|scaffold_294058 (8584-8684) | |
| 461-581, gnl|fr1|chrUn (267787640-267787554) | |
| 461-581, gnl|galGal2|chrZ (25428898-25428810) | |
| 461-581, gnl|hg17|chr4 (984485-984581) | |
| 461-581, gnl|Hg17|chr4 (984497-984616) | |
| 461-581, gnl|loxAfr1|scaffold_57276 (661-559) | |
| 461-581, gnl|mm7|chr5 (107860621-107860717) | |
| 461-581, gnl|Mm7|chr5 (107860633-107860755) | |
| 461-581, gnl|monDom2|scaffold_10 (47323111-47323018) | |
| 461-581, gnl|panTro1|chr3 (1064674-1064770) | |
| 461-581, gnl|rheMac2|chr1 (2963561-2963465) | |
| 461-581, gnl|rn3|chr14 (1576875-1576779) | |
| 461-581, gnl|tetNig1|chr12 (12285326-12285240) | |
| 461-581, gnl|xenTro1|scaffold_6889 (8570-8480) | |
| 869-1052, gnl|bosTau2|chr6 (63551728-63551545) | |
| 869-1052, gnl|Hg17|chr4 (985598-985781) | |
| 869-1052, gnl|Mm7|chr5 (107861501-107861684) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |