Non-Coding RNA Search

Ss1.1-Lym1-jns68_H11.f.5

Sequence:


               
               CCACCCCCAAATCATGAAAAGATTCTATGGACTGAAAAAGCCCCAGGCTGAAAGGACTGG
ACTGCCTTGATTGACATGGGGAAGGGGGTAGGAGACTATGTGTATCGCGGCAGCAGAGGC
TGCAGCCCAACGTGTGGTTTTAATGACCAGCACGCAGGGCAAAAGCATTTTGCACAGTGT
TTGTTTTCCTGTCTTGCACTTACAAATAAGGTCTATGGGAGTAGCATGGAAAACGTTTGC
TGTTTTTCCCTTTTTTTTTTTTAAATTGCTTTTGTTTAAAATTTGATCGCCTTAACTACT
GTAAACATAGCCTATTTTTGTGCTTAAGATACTGAATGGAAAACTCCATTGTGTGTTGCT
GGACTGTTTTGGAAATATTTGGTCAAATGTGTGTTAATTTGGCTGTAATGGCATTTAAAG
CAAACAAACAAACAAAAAAAAAGCTGTGAAAATGGCCTTGGAGCATTATCTTTAGTTACT
TGAAGAGTTTCTAGTTTTTTTAAAATACAGTTTATGTTAAAATAATTTTTATTAATTTAG
AGAAGACAATCAGCGTCTGTGAGAAAACGGACTTTCTTTTGGATTTTCTTTTTGTGGTCA
TCGTGAGTGATTGCTTTTTCCTTTTATTAGTTTCACATTCTTCCTTTGTTCTAAAACTTA
GACTGACATCTAGCTTTGACAATCATAGTATGTTTTATTTTCCTGAGGGGGGAATAACTT
ATAATGCTGTTTAGTTTTGTACTATTGGTGTGTTGGTGAATTTTTAAACTGTGTGCTAAC
TGCAATAAATTATATGAACTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCCCCAAATCATGAAAAGATTCTATGGACTGAAAAAGCCCCAGGCTGAAAGGACTGG
ACTGCCTTGATTGACATGGGGAAGGGGGTAGGAGACTATGTGTATCGCGGCAGCAGAGGC
TGCAGCCCAACGTGTGGTTTTAATGACCAGCACGCAGGGCAAAAGCATTTTGCACAGTGT
TTGTTTTCCTGTCTTGCACTTACAAATAAGGTCTATGGGAGTAGCATGGAAAACGTTTGC
TGTTTTTCCCTTTTTTTTTTTTAAATTGCTTTTGTTTAAAATTTGATCGCCTTAACTACT
GTAAACATAGCCTATTTTTGTGCTTAAGATACTGAATGGAAAACTCCATTGTGTGTTGCT
GGACTGTTTTGGAAATATTTGGTCAAATGTGTGTTAATTTGGCTGTAATGGCATTTAAAG
CAAACAAACAAACAAAAAAAAAGCTGTGAAAATGGCCTTGGAGCATTATCTTTAGTTACT
TGAAGAGTTTCTAGTTTTTTTAAAATACAGTTTATGTTAAAATAATTTTTATTAATTTAG
AGAAGACAATCAGCGTCTGTGAGAAAACGGACTTTCTTTTGGATTTTCTTTTTGTGGTCA
TCGTGAGTGATTGCTTTTTCCTTTTATTAGTTTCACATTCTTCCTTTGTTCTAAAACTTA
GACTGACATCTAGCTTTGACAATCATAGTATGTTTTATTTTCCTGAGGGGGGAATAACTT
ATAATGCTGTTTAGTTTTGTACTATTGGTGTGTTGGTGAATTTTTAAACTGTGTGCTAAC
TGCAATAAATTATATGAACTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               196-812, gnl|bosTau2|chr24 (1483642-1483041)
               

               
               196-812, gnl|Hg17|chr1 (240546216-240546819)
               

               
               196-812, gnl|Mm7|chr1 (177416443-177417055)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-812, gnl|bosTau2|chr24 (1483642-1483041)
               

               
               196-812, gnl|Hg17|chr1 (240546216-240546819)
               

               
               196-812, gnl|Mm7|chr1 (177416443-177417055)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               ecc (0.805246)
               

               
               sag (0.730861)
               

               
               tbr (0.616713)
               

               
               sme (0.610874)
               

               
               ste (0.540833)
               

               
               ldo (0.485013)
               

               
               fco (0.471624)
               

               
               spl (0.286369)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.805246)
               

               
               sag (0.730861)
               

               
               tbr (0.616713)
               

               
               sme (0.610874)
               

               
               ste (0.540833)
               

               
               ldo (0.485013)
               

               
               fco (0.471624)
               

               
               spl (0.286369)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	196-812, gnl\|bosTau2\|chr24 (1483642-1483041)
	196-812, gnl\|Hg17\|chr1 (240546216-240546819)
	196-812, gnl\|Mm7\|chr1 (177416443-177417055)

	ecc (0.805246)
	sag (0.730861)
	tbr (0.616713)
	sme (0.610874)
	ste (0.540833)
	ldo (0.485013)
	fco (0.471624)
	spl (0.286369)
	jca (0.22792)
	fcc (0.197785)
	aor (0.195274)
	mgm (0.180343)
	bfe (0.149858)
	ski (0.146735)
	lnt (0.142308)
	che (0.136314)
	kid (0.129735)
	bla (0.124347)
	pgl (0.118483)
	jej (0.0989218)