Non-Coding RNA Search

Ss1.1-Lym1-jns70_C10.f.5

Sequence:


               
               CTTGACCTGTTTGACTTGAGGGAGAGGGAGGAAGGGCGCGCGGGACGCAGGCGACGGGAG
GGCGCGCGGGCAGGCAGGGGACCTTGGCCAAGGCGAGAGCGGCGCGTGCCAGCGCCGCCT
CCTAGACTCGAGCAGAGCCAGAGAGAGGCGAGGTGGTGGGAAGTCCCAGAGCAACTTTTC
TCCAGGCTGGAGGGCGGCAAGGCATAGTCGCGAGGAGTCGCCAAGGCCGTCTGGAGACTC
CTGGCTTCCTGAACTTTGCGCGTTAAGGCTAGCCCAATGCCTCGCGGTCCGGAGCCCGGT
CCAGCCCAGCAAGAGAGCAGCGAAGAGAGGAGAGGAGAAGGGACCCTGGCGTCCCTGCAG
ACGCGAGGCGAGGCTGAGCGAAAGAAGGACAGAGGAGTCTGTCTGTCTAGGGTCCGGAGA
ACACTGGCTCTCAGCCTCTAGACGCGGGCCTCAGTTAGGACGTTCTGCGCGCAAATCTCA
TCAGTTTTATTGCCTGCTCGATTATATAGAAAAAAATACGAAAATCTGCATTAAAAATAT
TAATCCTGCATGCTGGACATGTATGGTAATAATTTCTATTTTGTACCATTTTCTTGTTTA
ACTTTAGCATGTTGTTGATCATGGATCATAACCCCCTTGTTTCTTTGAGTGAGAAGGGAT
CGCAGTTCGGAAACTCCGGCGGCTGCTTGCCGGGTTTCAGTCTCTCGGCTGTCGGCTTGT
AAATACCCGCCCCGCCAAACCGCTTAGAGAACGTGGCAGCAAGCTGTCTTTGTTTGGGTT
TATTATTATGCTCCCCTTTTTTTGTAAGTAAAAAAGAAAACTTCTGGGTATTTGCATCAG
AAAAAACAACTTCGTCTTGGGGCACCCTTGGAAGTTGTGTTTTCTCCCCTTTCAGTGCCC
CCTTTCAGTGCTCTTTTTCTCCCGTTTTAGTTTTCAATTTTGTGTTGAGAGAAGGAGGAC
AGAGGTCCCAGCTCCCGAGTACCAGGGTCTCGCAGCTGCAGAGTTTCAAACCCTGAAGGT
CCGGGAGGGAGCATCCTTGTGTCACCTGGTCTTAGGGCTAAATTGACATCCCCATGAAGA
AAGGAAAGGAAAACAGATCTTGTTTACTTTTTATTGCAACCGGAACACCCTACGGTCCCT
ATGAAACCCTCCAGGCCTCCACTAATTACTGGGGCTGAAATATTCTTAGGGTGAGTGTCT
TCACCAGCCCAGACTGCCCAGCGGTGACCTGAACTTGTGTTGAACCAACCGCTGCAGTCA
GAAAGATGGAGAAACCCAAACTTTGGCAAGTAATTTTGCAACTTTCAAGTGCGTTCTTTA
GACCAATATGTTATGTGCGTTTCTTTCCCTGCTTTTGAGATAGCGGGCGAGTTATTGGTG
GTGTCCCCCCCCCCCTTCAGTTGTATAGTAGTTATAGGGAAGATCTGGGTGTTTTTCTTT
ATTATTACTTTTTTTTTTTCCTGCAGGTCAGTAAAAGGATTTAAGTTGCACTGACAAAAA
TACCAAAATGAAAGCGTATTTTTTAGTTCTCATTTGAAATTTGCTGGCGCTGCTGGCCGG
ATGCATTTTTGAGTTTGTATTAGTTGATAAATTAACAGTAATAACAAGATTGTATGATCC
GCATGGTGCTTGCAGTTTTAAATATTGTGGATATTCGTCCTGCATCAGAAACGAGCTTTG
GTTTTTACGGATTCAACTGTGTTGAAATCAAATTTGCCGCAACAGAAATTGTTTTTATTT
CCTGTAAAATAAGGGATCAATTTCAAACCCTGCTTATGATATGAAAACATTAAAACCTAG
TCTATTGTAGTTTTATTCAGACTGGTTTCTGTTTTTTGGTTATTAAAATGGTTTCCTATT
TTGCTTATTAAACCATGGAAATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGACCTGTTTGACTTGAGGGAGAGGGAGGAAGGGCGCGCGGGACGCAGGCGACGGGAG
GGCGCGCGGGCAGGCAGGGGACCTTGGCCAAGGCGAGAGCGGCGCGTGCCAGCGCCGCCT
CCTAGACTCGAGCAGAGCCAGAGAGAGGCGAGGTGGTGGGAAGTCCCAGAGCAACTTTTC
TCCAGGCTGGAGGGCGGCAAGGCATAGTCGCGAGGAGTCGCCAAGGCCGTCTGGAGACTC
CTGGCTTCCTGAACTTTGCGCGTTAAGGCTAGCCCAATGCCTCGCGGTCCGGAGCCCGGT
CCAGCCCAGCAAGAGAGCAGCGAAGAGAGGAGAGGAGAAGGGACCCTGGCGTCCCTGCAG
ACGCGAGGCGAGGCTGAGCGAAAGAAGGACAGAGGAGTCTGTCTGTCTAGGGTCCGGAGA
ACACTGGCTCTCAGCCTCTAGACGCGGGCCTCAGTTAGGACGTTCTGCGCGCAAATCTCA
TCAGTTTTATTGCCTGCTCGATTATATAGAAAAAAATACGAAAATCTGCATTAAAAATAT
TAATCCTGCATGCTGGACATGTATGGTAATAATTTCTATTTTGTACCATTTTCTTGTTTA
ACTTTAGCATGTTGTTGATCATGGATCATAACCCCCTTGTTTCTTTGAGTGAGAAGGGAT
CGCAGTTCGGAAACTCCGGCGGCTGCTTGCCGGGTTTCAGTCTCTCGGCTGTCGGCTTGT
AAATACCCGCCCCGCCAAACCGCTTAGAGAACGTGGCAGCAAGCTGTCTTTGTTTGGGTT
TATTATTATGCTCCCCTTTTTTTGTAAGTAAAAAAGAAAACTTCTGGGTATTTGCATCAG
AAAAAACAACTTCGTCTTGGGGCACCCTTGGAAGTTGTGTTTTCTCCCCTTTCAGTGCCC
CCTTTCAGTGCTCTTTTTCTCCCGTTTTAGTTTTCAATTTTGTGTTGAGAGAAGGAGGAC
AGAGGTCCCAGCTCCCGAGTACCAGGGTCTCGCAGCTGCAGAGTTTCAAACCCTGAAGGT
CCGGGAGGGAGCATCCTTGTGTCACCTGGTCTTAGGGCTAAATTGACATCCCCATGAAGA
AAGGAAAGGAAAACAGATCTTGTTTACTTTTTATTGCAACCGGAACACCCTACGGTCCCT
ATGAAACCCTCCAGGCCTCCACTAATTACTGGGGCTGAAATATTCTTAGGGTGAGTGTCT
TCACCAGCCCAGACTGCCCAGCGGTGACCTGAACTTGTGTTGAACCAACCGCTGCAGTCA
GAAAGATGGAGAAACCCAAACTTTGGCAAGTAATTTTGCAACTTTCAAGTGCGTTCTTTA
GACCAATATGTTATGTGCGTTTCTTTCCCTGCTTTTGAGATAGCGGGCGAGTTATTGGTG
GTGTCCCCCCCCCCCTTCAGTTGTATAGTAGTTATAGGGAAGATCTGGGTGTTTTTCTTT
ATTATTACTTTTTTTTTTTCCTGCAGGTCAGTAAAAGGATTTAAGTTGCACTGACAAAAA
TACCAAAATGAAAGCGTATTTTTTAGTTCTCATTTGAAATTTGCTGGCGCTGCTGGCCGG
ATGCATTTTTGAGTTTGTATTAGTTGATAAATTAACAGTAATAACAAGATTGTATGATCC
GCATGGTGCTTGCAGTTTTAAATATTGTGGATATTCGTCCTGCATCAGAAACGAGCTTTG
GTTTTTACGGATTCAACTGTGTTGAAATCAAATTTGCCGCAACAGAAATTGTTTTTATTT
CCTGTAAAATAAGGGATCAATTTCAAACCCTGCTTATGATATGAAAACATTAAAACCTAG
TCTATTGTAGTTTTATTCAGACTGGTTTCTGTTTTTTGGTTATTAAAATGGTTTCCTATT
TTGCTTATTAAACCATGGAAATGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1770-1884, - strand, RNAz p=0.785399

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1770-1884, - strand, RNAz p=0.785399

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1884, gnl|bosTau2|chr13 (50962463-50960556)
               

               
               1-1884, gnl|Hg17|chr20 (38749829-38747917)
               

               
               1-1884, gnl|Mm7|chr2 (160106500-160104581)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1884, gnl|bosTau2|chr13 (50962463-50960556)
               

               
               1-1884, gnl|Hg17|chr20 (38749829-38747917)
               

               
               1-1884, gnl|Mm7|chr2 (160106500-160104581)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               spl (0.429553)
               

               
               hea (0.408998)
               

               
               sin (0.349895)
               

               
               ldo (0.291008)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               hea (0.408998)
               

               
               sin (0.349895)
               

               
               ldo (0.291008)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

	1-1884, gnl\|bosTau2\|chr13 (50962463-50960556)
	1-1884, gnl\|Hg17\|chr20 (38749829-38747917)
	1-1884, gnl\|Mm7\|chr2 (160106500-160104581)

	spl (0.429553)
	hea (0.408998)
	sin (0.349895)
	ldo (0.291008)
	csk (0.281492)
	ste (0.270416)
	jca (0.22792)
	nlu (0.191681)
	ill (0.175593)
	rec (0.17307)
	csp (0.161186)
	cli (0.152812)
	ski (0.146735)
	cst (0.140036)
	pla (0.133672)
	cov (0.132153)
	kid (0.129735)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	clu (0.119646)
	nbm (0.0993246)