Non-Coding RNA Search

Ss1.1-Lym1-jns70_F10.f.5

Sequence:


               
               TTTGGGCTCTTTTAAACATTAAACTGGTAACAAGTCAACCTTATGTTCAACAGACACTCA
GCCTTTTACTTCCACTGCTGGGATTTTTCACTCAAACTCTAGATCCTCAGCTGATAAGTC
AGGTAGTATCTTTGCAGACCTCACTACTTAAGTTAGAGCCTCCTGACCATGTTCGTTTGG
CAGCTCTTGATTTTCTGTCTTCTCTAGGAAAACTTTTTATACCTCCAGCTATCCAGGACA
AAATTCTGCCCAACCTATCTTCTATTTTTGCCTTACTGCTAGCTGACAGGAATTGGCTAC
TTGAACAACACACCTTGGAGGCATTTACTCAGTTTGCTGAGGAAACAAATCATGAAGAGA
TTGTTCCACAGTGTCTCACTTCTGAAGAAACAAAGAAAAAAGTTGTATCTTTTCTGGAGA
AGATGGGGTTTGTAAATGAAACTACAGCTGCCAGAGTGGAACGTATCAAACAGGAAAAAG
GTATTTTCTGGAAGCCCTTTGCTAAAGTTACTGTAGAAGAAGCAAAGAGGTCATCTTTAC
AGCCTTATGTGAAAAGAGCCCGTCATGAGTGTTCCTTGGAAGAAGAGTACAGGTCAGCAC
TGCAAGCAGCCACAGGGGCCTTGGAGGCAATTGAGTTATTACTGCAAAAGTCTCCTCCTC
CAGACTGGCTTCTTGTGAAAATGGAGACACTCCAAGAAAGGATTGATAAGCTGAAATGTC
ATGTTTTCTAGGGTAAAAATTGAATGGACTGGACCATTTTCACTCAGTAGAGCTAGGTAT
GATTTTTTTGTTGTCCTACAGTATATTTTGTAAATCAAAGTGTTGATGTAATTATGTTAG
TACATTTCCCAACACATAAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGGCTCTTTTAAACATTAAACTGGTAACAAGTCAACCTTATGTTCAACAGACACTCA
GCCTTTTACTTCCACTGCTGGGATTTTTCACTCAAACTCTAGATCCTCAGCTGATAAGTC
AGGTAGTATCTTTGCAGACCTCACTACTTAAGTTAGAGCCTCCTGACCATGTTCGTTTGG
CAGCTCTTGATTTTCTGTCTTCTCTAGGAAAACTTTTTATACCTCCAGCTATCCAGGACA
AAATTCTGCCCAACCTATCTTCTATTTTTGCCTTACTGCTAGCTGACAGGAATTGGCTAC
TTGAACAACACACCTTGGAGGCATTTACTCAGTTTGCTGAGGAAACAAATCATGAAGAGA
TTGTTCCACAGTGTCTCACTTCTGAAGAAACAAAGAAAAAAGTTGTATCTTTTCTGGAGA
AGATGGGGTTTGTAAATGAAACTACAGCTGCCAGAGTGGAACGTATCAAACAGGAAAAAG
GTATTTTCTGGAAGCCCTTTGCTAAAGTTACTGTAGAAGAAGCAAAGAGGTCATCTTTAC
AGCCTTATGTGAAAAGAGCCCGTCATGAGTGTTCCTTGGAAGAAGAGTACAGGTCAGCAC
TGCAAGCAGCCACAGGGGCCTTGGAGGCAATTGAGTTATTACTGCAAAAGTCTCCTCCTC
CAGACTGGCTTCTTGTGAAAATGGAGACACTCCAAGAAAGGATTGATAAGCTGAAATGTC
ATGTTTTCTAGGGTAAAAATTGAATGGACTGGACCATTTTCACTCAGTAGAGCTAGGTAT
GATTTTTTTGTTGTCCTACAGTATATTTTGTAAATCAAAGTGTTGATGTAATTATGTTAG
TACATTTCCCAACACATAAAACTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               531-864, gnl|bosTau2|chr16 (25677986-25678318)
               

               
               531-864, gnl|Hg17|chr1 (166553581-166553874)
               

               
               531-864, gnl|Mm7|chr1 (163917731-163917402)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               531-864, gnl|bosTau2|chr16 (25677986-25678318)
               

               
               531-864, gnl|Hg17|chr1 (166553581-166553874)
               

               
               531-864, gnl|Mm7|chr1 (163917731-163917402)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               cmu (0.372787)
               

               
               thg (0.253582)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               kid (0.129735)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               thg (0.253582)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               kid (0.129735)

	531-864, gnl\|bosTau2\|chr16 (25677986-25678318)
	531-864, gnl\|Hg17\|chr1 (166553581-166553874)
	531-864, gnl\|Mm7\|chr1 (163917731-163917402)

	cmu (0.372787)
	thg (0.253582)
	ill (0.175593)
	eye (0.170503)
	csk (0.140746)
	pla (0.133672)
	kid (0.129735)