Non-Coding RNA Search

Ss1.1-Lym1-jns72_C07.f.5

Sequence:


               
               ATAAAGACAAACTGAAAAGTCTCTGAGGATGTTGTTACTACTGAAAAGTACACTTTCCAC
TGAAGATGCAAACATATGTTCTTAGAATTAATCATAACATGGAATCTACGGTATTAAACA
TCAGTGAAAATTCTGTTTTAACTTCATATTTGTACATGGTACATGGATGATGAAAATGAG
TTATTCCTTGCTGTTCACTATGGCAAACACTGGAATCCTATTCAGTGTCAACGCATAAAA
ATTCATCCAACTCTCGAGAAGAATGTAAACGTTTGGACTTTTATCAGCTGGTGGATTTCA
TGTAATGTCCATGAGAAAACTTCTGAAAATCAATCCATCCAAAATTTGAGGAAGTAAAAG
TCTTAAGATTTTTCAATGTTTTTCCTTTGACATAATCTGGAGTTCAATTGGGTAAAAACT
AATTTCTTCTTAAAGTACTTGTATATTCCCTAGTTTACAAAAGAGTAGGAAAGGGCTTCT
AACTTTAAATCCTTTCATATCAGTTTTTATAAATATCCATCTGTTTAGTTTCTAATTTTC
TTATAATCATAGTCATATAAACACGTCTTAATTTTTAAATATAGTTTCTTAAATCATAAA
TGCAAGATACAGATCTTGACTGTTCTCAGTGTATCATAGATTAAAATGATACTCATTTAT
AGGAAGCAGATATATAAATCATGGGTAATAAAATTTCTTGGATAATTAAATTTATTGTCA
AAGATGATTAGATTAGCAGAATGTGACCTATCAGGAAGATCTATGAGATTTTAATGCCTT
ACCTTACATTTCCTCCTGCACAAGGAATCTATCCAAAACTGGAGGGTTTTTAGAGCCAGA
AAAATCACTAAAAGAAGCAAATAACTATATTTTTCTAGTGTGGTTTTTATTCCAAATAAA
CCCCATGTCCTCTGAATAGTAAATCACTTTCTTTATCTCCTGTTTCATCCTCTTAAGAAT
TGAGGAAATGGAAAGATGGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAGACAAACTGAAAAGTCTCTGAGGATGTTGTTACTACTGAAAAGTACACTTTCCAC
TGAAGATGCAAACATATGTTCTTAGAATTAATCATAACATGGAATCTACGGTATTAAACA
TCAGTGAAAATTCTGTTTTAACTTCATATTTGTACATGGTACATGGATGATGAAAATGAG
TTATTCCTTGCTGTTCACTATGGCAAACACTGGAATCCTATTCAGTGTCAACGCATAAAA
ATTCATCCAACTCTCGAGAAGAATGTAAACGTTTGGACTTTTATCAGCTGGTGGATTTCA
TGTAATGTCCATGAGAAAACTTCTGAAAATCAATCCATCCAAAATTTGAGGAAGTAAAAG
TCTTAAGATTTTTCAATGTTTTTCCTTTGACATAATCTGGAGTTCAATTGGGTAAAAACT
AATTTCTTCTTAAAGTACTTGTATATTCCCTAGTTTACAAAAGAGTAGGAAAGGGCTTCT
AACTTTAAATCCTTTCATATCAGTTTTTATAAATATCCATCTGTTTAGTTTCTAATTTTC
TTATAATCATAGTCATATAAACACGTCTTAATTTTTAAATATAGTTTCTTAAATCATAAA
TGCAAGATACAGATCTTGACTGTTCTCAGTGTATCATAGATTAAAATGATACTCATTTAT
AGGAAGCAGATATATAAATCATGGGTAATAAAATTTCTTGGATAATTAAATTTATTGTCA
AAGATGATTAGATTAGCAGAATGTGACCTATCAGGAAGATCTATGAGATTTTAATGCCTT
ACCTTACATTTCCTCCTGCACAAGGAATCTATCCAAAACTGGAGGGTTTTTAGAGCCAGA
AAAATCACTAAAAGAAGCAAATAACTATATTTTTCTAGTGTGGTTTTTATTCCAAATAAA
CCCCATGTCCTCTGAATAGTAAATCACTTTCTTTATCTCCTGTTTCATCCTCTTAAGAAT
TGAGGAAATGGAAAGATGGAAAGT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               234-710, gnl|bosTau2|chr17 (11943074-11943546)
               

               
               234-710, gnl|Hg17|chr14 (54075055-54075527)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               234-710, gnl|bosTau2|chr17 (11943074-11943546)
               

               
               234-710, gnl|Hg17|chr14 (54075055-54075527)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               pty (0.285429)
               

               
               sag (0.182715)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.285429)
               

               
               sag (0.182715)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               tra (0.123092)

	234-710, gnl\|bosTau2\|chr17 (11943074-11943546)
	234-710, gnl\|Hg17\|chr14 (54075055-54075527)

	pty (0.285429)
	sag (0.182715)
	hyp (0.142837)
	ute (0.132784)
	tra (0.123092)