Ss1.1-Lym1-jns73_B01.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTCTCTAAAAATATAATTTGAATTTAAAGATCTTTGGTGGGTTTATTTTCTGTGTCTT CATGGTTATGATTTGGAACGAAATGTGCCTAATTCTCTTACTATATTCTCTTCCTAAGTC TGAATGTCTTGTTTACTTCTTAAGAGATGTCACACAAGTGTCTTCATTGGCCTTGAGGAA ATTTATACAGAGTTGCCTTACAAAATCAAAGAACACCACAGATTTTTGCCTTGATTTTTT TTTAATAGGGAAAAGGTTTTGTCAGATGTTTTCTGAAGATCCAGATAATTTAAGGCATGC CTCTGGCACTTAAATATTATTTTTAATAACCCACATCATTGCTTGCTGCCAAATATTGTA TTAAATGGAAATCTTCATTTCAGTTTTATTGTCTGGAAAGGGCACTTGATAGAGCACAAC AGCAACCAAAGAAAGCATCGTGGAGTGAAAAAGACTGGGTTTGGTTTGGTTTTATCTGAA GCTGCATCGGCATGTAGTTTACTTGGTGAAGATCCTCTGGTTAGTCCCTCAAGTGAGGTT AGGTTGGTCAGAGGAATCCTTGTTCAGTTGTTGGCAGTGGTTGGTATAAAGCAGAAGGAA GTAAGATCACCTTAATACCAGAAGTGATTAGAAGTGTTGATTTGAATTGACTCATAATTT TTTGTAAGCGGGAATGAGTAAATCCTGACTTCCAGTGTATACAATATTTGTATTTGTGCT TTTGGTAAAAATGTGTCTTCAGCATTAGTACACATATCCGGTGATGCCTTACTTATATGA AGAGAAGAAGTTACCAAGTTATGTTCTGAAACTCAGATCCCTTATTTGAGAAACCCTCAA ATTGGTGCTTTCATTATATAATGATACATTTAGACAAAAACCCCAAACCAGGCCATCTGA AACAAGAGTCTCTCCATTGCAATTTGTAGCACTGTTATTTCTGTATATGTAATGAGAAGG TTAAATATCAGTGTTAACTCTTAATTTCTTGTTTGAATCCATGAAATCATGCCTGTAAAG CTGAAACATTTGTAATAAAGTCCCCTAATAAACCTAGAGAAAGTCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTCTCTAAAAATATAATTTGAATTTAAAGATCTTTGGTGGGTTTATTTTCTGTGTCTT CATGGTTATGATTTGGAACGAAATGTGCCTAATTCTCTTACTATATTCTCTTCCTAAGTC TGAATGTCTTGTTTACTTCTTAAGAGATGTCACACAAGTGTCTTCATTGGCCTTGAGGAA ATTTATACAGAGTTGCCTTACAAAATCAAAGAACACCACAGATTTTTGCCTTGATTTTTT TTTAATAGGGAAAAGGTTTTGTCAGATGTTTTCTGAAGATCCAGATAATTTAAGGCATGC CTCTGGCACTTAAATATTATTTTTAATAACCCACATCATTGCTTGCTGCCAAATATTGTA TTAAATGGAAATCTTCATTTCAGTTTTATTGTCTGGAAAGGGCACTTGATAGAGCACAAC AGCAACCAAAGAAAGCATCGTGGAGTGAAAAAGACTGGGTTTGGTTTGGTTTTATCTGAA GCTGCATCGGCATGTAGTTTACTTGGTGAAGATCCTCTGGTTAGTCCCTCAAGTGAGGTT AGGTTGGTCAGAGGAATCCTTGTTCAGTTGTTGGCAGTGGTTGGTATAAAGCAGAAGGAA GTAAGATCACCTTAATACCAGAAGTGATTAGAAGTGTTGATTTGAATTGACTCATAATTT TTTGTAAGCGGGAATGAGTAAATCCTGACTTCCAGTGTATACAATATTTGTATTTGTGCT TTTGGTAAAAATGTGTCTTCAGCATTAGTACACATATCCGGTGATGCCTTACTTATATGA AGAGAAGAAGTTACCAAGTTATGTTCTGAAACTCAGATCCCTTATTTGAGAAACCCTCAA ATTGGTGCTTTCATTATATAATGATACATTTAGACAAAAACCCCAAACCAGGCCATCTGA AACAAGAGTCTCTCCATTGCAATTTGTAGCACTGTTATTTCTGTATATGTAATGAGAAGG TTAAATATCAGTGTTAACTCTTAATTTCTTGTTTGAATCCATGAAATCATGCCTGTAAAG CTGAAACATTTGTAATAAAGTCCCCTAATAAACCTAGAGAAAGTCAAAAAAAAAAAAAAA |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-444, gnl|bosTau2|chr19 (56375939-56376388) | |
| 1-444, gnl|canFam2|chr9 (18099534-18099113) | |
| 1-444, gnl|dasNov1|scaffold_26126 (7009-7437) | |
| 1-444, gnl|echTel1|scaffold_310494 (4733-5142) | |
| 1-444, gnl|hg17|chr17 (60437932-60438326) | |
| 1-444, gnl|Hg17|chr17 (60438352-60437932) | |
| 1-444, gnl|loxAfr1|scaffold_13822 (16711-16287) | |
| 1-444, gnl|mm7|chr11 (109508278-109507869) | |
| 1-444, gnl|Mm7|chr11 (109507842-109508285) | |
| 1-444, gnl|monDom2|scaffold_18 (21107876-21107411) | |
| 1-444, gnl|oryCun1|scaffold_93118 (533-922) | |
| 1-444, gnl|panTro1|chr19 (63690496-63690891) | |
| 1-444, gnl|rheMac2|chr16 (60408269-60408655) | |
| 1-444, gnl|rn3|chr10 (98944944-98945354) | |
| 537-1066, gnl|bosTau2|chr19 (56376425-56376980) | |
| 537-1066, gnl|canFam2|chr9 (18100436-18099790) | |
| 537-1066, gnl|canFam2|chr9 (18100436-18099795) | |
| 537-1066, gnl|dasNov1|scaffold_26126 (6116-6749) | |
| 537-1066, gnl|dasNov1|scaffold_26126 (6116-6741) | |
| 537-1066, gnl|echTel1|scaffold_310494 (3907-4539) | |
| 537-1066, gnl|echTel1|scaffold_310494 (3907-4534) | |
| 537-1066, gnl|hg17|chr17 (60437005-60437673) | |
| 537-1066, gnl|Hg17|chr17 (60437854-60437295) | |
| 537-1066, gnl|hg17|chr6 (52752410-52753061) | |
| 537-1066, gnl|loxAfr1|scaffold_13822 (17609-16958) | |
| 537-1066, gnl|loxAfr1|scaffold_13822 (17609-16967) | |
| 537-1066, gnl|mm7|chr11 (109509158-109508522) | |
| 537-1066, gnl|mm7|chr11 (109509158-109508532) | |
| 537-1066, gnl|Mm7|chr11 (109508366-109508899) | |
| 537-1066, gnl|monDom2|scaffold_18 (21108798-21108137) | |
| 537-1066, gnl|monDom2|scaffold_18 (21108798-21108124) | |
| 537-1066, gnl|oryCun1|scaffold_214546 (12474-13086) | |
| 537-1066, gnl|oryCun1|scaffold_214546 (12474-13072) | |
| 537-1066, gnl|panTro1|chr19 (63689573-63690238) | |
| 537-1066, gnl|panTro1|chr5 (53770347-53770998) | |
| 537-1066, gnl|rheMac2|chr16 (60407365-60408017) | |
| 537-1066, gnl|rheMac2|chr16 (60407365-60408003) | |
| 537-1066, gnl|rn3|chr10 (98944102-98944709) | |
| 537-1066, gnl|rn3|chr10 (98944102-98944699) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-444, gnl|bosTau2|chr19 (56375939-56376388) | |
| 1-444, gnl|canFam2|chr9 (18099534-18099113) | |
| 1-444, gnl|dasNov1|scaffold_26126 (7009-7437) | |
| 1-444, gnl|echTel1|scaffold_310494 (4733-5142) | |
| 1-444, gnl|hg17|chr17 (60437932-60438326) | |
| 1-444, gnl|Hg17|chr17 (60438352-60437932) | |
| 1-444, gnl|loxAfr1|scaffold_13822 (16711-16287) | |
| 1-444, gnl|mm7|chr11 (109508278-109507869) | |
| 1-444, gnl|Mm7|chr11 (109507842-109508285) | |
| 1-444, gnl|monDom2|scaffold_18 (21107876-21107411) | |
| 1-444, gnl|oryCun1|scaffold_93118 (533-922) | |
| 1-444, gnl|panTro1|chr19 (63690496-63690891) | |
| 1-444, gnl|rheMac2|chr16 (60408269-60408655) | |
| 1-444, gnl|rn3|chr10 (98944944-98945354) | |
| 537-1066, gnl|bosTau2|chr19 (56376425-56376980) | |
| 537-1066, gnl|canFam2|chr9 (18100436-18099790) | |
| 537-1066, gnl|canFam2|chr9 (18100436-18099795) | |
| 537-1066, gnl|dasNov1|scaffold_26126 (6116-6749) | |
| 537-1066, gnl|dasNov1|scaffold_26126 (6116-6741) | |
| 537-1066, gnl|echTel1|scaffold_310494 (3907-4539) | |
| 537-1066, gnl|echTel1|scaffold_310494 (3907-4534) | |
| 537-1066, gnl|hg17|chr17 (60437005-60437673) | |
| 537-1066, gnl|Hg17|chr17 (60437854-60437295) | |
| 537-1066, gnl|hg17|chr6 (52752410-52753061) | |
| 537-1066, gnl|loxAfr1|scaffold_13822 (17609-16958) | |
| 537-1066, gnl|loxAfr1|scaffold_13822 (17609-16967) | |
| 537-1066, gnl|mm7|chr11 (109509158-109508522) | |
| 537-1066, gnl|mm7|chr11 (109509158-109508532) | |
| 537-1066, gnl|Mm7|chr11 (109508366-109508899) | |
| 537-1066, gnl|monDom2|scaffold_18 (21108798-21108137) | |
| 537-1066, gnl|monDom2|scaffold_18 (21108798-21108124) | |
| 537-1066, gnl|oryCun1|scaffold_214546 (12474-13086) | |
| 537-1066, gnl|oryCun1|scaffold_214546 (12474-13072) | |
| 537-1066, gnl|panTro1|chr19 (63689573-63690238) | |
| 537-1066, gnl|panTro1|chr5 (53770347-53770998) | |
| 537-1066, gnl|rheMac2|chr16 (60407365-60408017) | |
| 537-1066, gnl|rheMac2|chr16 (60407365-60408003) | |
| 537-1066, gnl|rn3|chr10 (98944102-98944709) | |
| 537-1066, gnl|rn3|chr10 (98944102-98944699) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| mgp (0.461361) | |
| liv (0.292569) | |
| cbe (0.239234) | |
| sin (0.174948) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| kid (0.129735) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.461361) | |
| liv (0.292569) | |
| cbe (0.239234) | |
| sin (0.174948) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| kid (0.129735) |