Non-Coding RNA Search

Ss1.1-Lym1-jns74_H02.f.5

Sequence:


               
               TCTTCTTGGCATCCAACCTAAAAGCCAGCATCTCACTATTTATTGACAGGGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGCACGCACGCCTGTATTTCTAGGTGTGCCCATGTCCTCCT
GCAGCTTTTAAAAAGAAAACCCAGTTGCCCCAGTACTAATTTGGTATCTTCTCATGCCTA
GTCTAGTATTTTGGCCGTACGTCCCCAAACAGTTTTAATTTTCCAGGCTGACATGTTCAA
GAGGGGCTGGGTCACATGTTGAGCGGGGTATGGGAAGGGGAGGGGGAGAAGACGTTAACA
TTTATTTTATTATTTATTTGAACTGTTTACATCTTTGTGTTGCACCAAGCCTGAATAGAA
ACAGATAGCATTAAAATGCTCAGTCCCTCTCTCCCTCTCTTCCTTCTTTGTAATTTTTTA
AAAATTAGCCTAAGCATCATTAGGCTAATGATGCTTTTTTTTTTTTTGGTTTCAAAAATG
ACTCGTGACTTGTGCTGTACAAACTGTATAAAAAAGGTTCTGTTTTTAAAGATGGACTGT
CATTTCCTCGGGACAGTGGTCACTGAGAAGTCTCCATTGTAAGAGAACACAGCAAAAGGT
CCTGCCCTGTTCCTCAGAAATTACTCTCTCTGTATGATTAAAAGTTTATTCCATTTATTT
TAGTGTGTGGTTACTTGATGTCGAGGAAGAAAAAAAAAAAATTCGCCTTTGTATAAAGAC
TAGGTATCAGGGTGTCTTTTCTGTAGCGAGAGCTGTATATATAGTATTTTGGTATATAGT
GGAAAATCATAAGCTTTGTGCATCTGTATTTGAGGTATGTTGATGATGTGGGGTAAAGAT
CCTGGAGGCAAAAAATAAAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTCTTGGCATCCAACCTAAAAGCCAGCATCTCACTATTTATTGACAGGGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGCACGCACGCCTGTATTTCTAGGTGTGCCCATGTCCTCCT
GCAGCTTTTAAAAAGAAAACCCAGTTGCCCCAGTACTAATTTGGTATCTTCTCATGCCTA
GTCTAGTATTTTGGCCGTACGTCCCCAAACAGTTTTAATTTTCCAGGCTGACATGTTCAA
GAGGGGCTGGGTCACATGTTGAGCGGGGTATGGGAAGGGGAGGGGGAGAAGACGTTAACA
TTTATTTTATTATTTATTTGAACTGTTTACATCTTTGTGTTGCACCAAGCCTGAATAGAA
ACAGATAGCATTAAAATGCTCAGTCCCTCTCTCCCTCTCTTCCTTCTTTGTAATTTTTTA
AAAATTAGCCTAAGCATCATTAGGCTAATGATGCTTTTTTTTTTTTTGGTTTCAAAAATG
ACTCGTGACTTGTGCTGTACAAACTGTATAAAAAAGGTTCTGTTTTTAAAGATGGACTGT
CATTTCCTCGGGACAGTGGTCACTGAGAAGTCTCCATTGTAAGAGAACACAGCAAAAGGT
CCTGCCCTGTTCCTCAGAAATTACTCTCTCTGTATGATTAAAAGTTTATTCCATTTATTT
TAGTGTGTGGTTACTTGATGTCGAGGAAGAAAAAAAAAAAATTCGCCTTTGTATAAAGAC
TAGGTATCAGGGTGTCTTTTCTGTAGCGAGAGCTGTATATATAGTATTTTGGTATATAGT
GGAAAATCATAAGCTTTGTGCATCTGTATTTGAGGTATGTTGATGATGTGGGGTAAAGAT
CCTGGAGGCAAAAAATAAAAATAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               284-400, - strand, RNAz p=0.507071

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               284-400, - strand, RNAz p=0.507071

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-839, gnl|bosTau2|chr11 (59145024-59145828)
               

               
               1-839, gnl|Hg17|chr2 (28550587-28551387)
               

               
               1-839, gnl|Mm7|chr5 (31189059-31189913)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-839, gnl|bosTau2|chr11 (59145024-59145828)
               

               
               1-839, gnl|Hg17|chr2 (28550587-28551387)
               

               
               1-839, gnl|Mm7|chr5 (31189059-31189913)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               csk (0.422238)
               

               
               cov (0.264306)
               

               
               hea (0.204499)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.422238)
               

               
               cov (0.264306)
               

               
               hea (0.204499)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-839, gnl\|bosTau2\|chr11 (59145024-59145828)
	1-839, gnl\|Hg17\|chr2 (28550587-28551387)
	1-839, gnl\|Mm7\|chr5 (31189059-31189913)

	csk (0.422238)
	cov (0.264306)
	hea (0.204499)
	ton (0.1755)
	fbs (0.175346)
	rec (0.17307)
	ski (0.146735)
	pla (0.133672)
	ese (0.126502)
	eep (0.122564)
	cbl (0.114797)
	jej (0.0989218)
	eje (0.0988338)