Ss1.1-Lym1-jns76_E10.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTCGTCTGCACTAACAGCCATCTCGGGCCTTTTCCGCTTTTCGTCTGCCGGCTTTATC TCTGTTCCCCAGGTCGTTCTGGGCTCGAGGCCCCAGTTCCTCAGCAACCTTCCTCCGCCC CCAGCGACTCGCTTCTCACCCCGAATCTCTCCGAGGCTCGGAGCAACTCTGCTGTGCGTC TTCGCGGTGCCTCCCGGGCTGAGGCCTGCCGCGCTCAGTGAGTCTGTGCAGACCTGACCC CGCGTCTCCCCCGCAGCTCGGTTGAGGCCGCCGCCGCCTCACGATGCCCAGACTGGGCTC TGCGCAGCGCTGGGCGGCCGCCGCGGGCCGTTGGGGCCACAGGCTGCTCGTGCTGCTGCT GTTGCTGGTGCCGGGGCCCGGCGGCGCGTCTGAGATCACCTTCGAGCTGCCCGACAATGC CAAGCAGTGTTTCTACGAGGACATCACGCAGGGCACCAAGTGCACCCTCGAGTTCCAGGT GATTACTGGCGGTCACTACGATGTAGATTGTCGATTAGAAGATCCTGATGGTAATGTGTT ATACAAAGAGATGAAGAAACAGTATGATAGTTTTACCTTCACAGCCTCCAAAAATGGGAC ATACAAATTTTGCTTCAGCAATGAATTTTCTACATTCACACATAAAACTGTGTATTTTGA TTTTCAAGTTGGAGAAGACCCACCCTTGTTTCCTAGTGAGAACCGAGTCAGTGCTCTTAC CCAGATGGAATCTGCCTGTGTTTCAATTCATGAAGCTCTGAAATCTGTCATCGACTATCA GACTCATTTCCGTTTGAGAGAAGCTCAAGGGCGAAGCCGAGCTGAGGATCTAAATACAAG AGTGGCCTATTGGTCAGTAGGAGAAGCCCTCATTCTTCTGGTGGTTAGCATAGGGCAGGT ATTTCTTCTGAAAAGCTTTTTCTCAGATAAAAGAACCACAACAACTCGTGTTGGATCATA ACTACGCTTTGAGAATTGGTGCCCCATTGCCGCTGTAATATTGCTGTCCTCTAATTAGTT TTAGGTACCGAAGAACTTGATATTGGCAACATTTTTAGAACCTTACTCATACACTTGTTG GGGGGGATGTACAGTGCATAACCCCAAGCTGTGGAAAGGACACTTTTTTCAATTTGTAAG GGTAGAAAAACTTTGGAACTTACTTTGGGCTATTCATAAATATTCAGTACAATGATCTAC TCTTTCTTGGTTGTTTCTATCTGTTCTTCTTACACTAAACTTTGGTATTTTGATTCCTTT TATCCGTTTAAAAGTACTTTTCTTGTAGGTAGTGGATATTTTAAAAACCTTCGATTTAAT GTCTACATGTGTTATGGAGGAAGAAAATTGCCTTTGTTTATAGTAAATAAAGTTTTGTTT TTAAGAAAACCAGATGTGATTAACTGTAGCCCAAGCCCTATTCTGCACTGTTTAATTTTA TGGGGAAAAAAAAATTGACCATAGAAATATTAGTTGATATTGATATAATTTTAAATTGGT ACATCATGTTTAATTTATTTCTCAGTATCTTGGAAAATGTCAGCTTTGTCGTTTGGCTTT ATTTTATGATATCTAAGCAGAAATGTTATTTTTTTCATAAAGACATTCTTACCACACAGA GACTAGTATGTTTGAGTAACACAATAGAGTTTATATGGGCCTTATAAATCAGACTGTTGT TAACAGAATAAGACACTATGATGGTGGGGGCAGGCTGAAGTGAGAAAACTTGTGTTGAGT TTCGGCATGTATTAAATTTTCTGTTCTTTTAAGAAGAAAAAAGTGATCTGTTTCATTTTC AACATTTAAATTGACTGATTCTTGCTCTTATGTGACTTTAATGTCTGAGTCATCCCAGCT AAATTGATAGTTGTAGTATAGTATTGTAAAAGTGCCATGCATTTTATTTGTAAGGGTGTT GATGCACTGAGAAGTTAGTTTTTTTTTTTCTTTCTTTCTTTTGTTTCTGTTTTATCTTGC ACATGTAACTTGTACAATCTCTGATTAGTAGCCCTAAGGTGATTTAAAAATGTAGAATGC TGTGTGTGTTTCTCATTTGATAATCTTCATTGATTGTACCACATCTAGTGAATATTAAAT AGTACATTTTCTATACACTATAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTCGTCTGCACTAACAGCCATCTCGGGCCTTTTCCGCTTTTCGTCTGCCGGCTTTATC TCTGTTCCCCAGGTCGTTCTGGGCTCGAGGCCCCAGTTCCTCAGCAACCTTCCTCCGCCC CCAGCGACTCGCTTCTCACCCCGAATCTCTCCGAGGCTCGGAGCAACTCTGCTGTGCGTC TTCGCGGTGCCTCCCGGGCTGAGGCCTGCCGCGCTCAGTGAGTCTGTGCAGACCTGACCC CGCGTCTCCCCCGCAGCTCGGTTGAGGCCGCCGCCGCCTCACGATGCCCAGACTGGGCTC TGCGCAGCGCTGGGCGGCCGCCGCGGGCCGTTGGGGCCACAGGCTGCTCGTGCTGCTGCT GTTGCTGGTGCCGGGGCCCGGCGGCGCGTCTGAGATCACCTTCGAGCTGCCCGACAATGC CAAGCAGTGTTTCTACGAGGACATCACGCAGGGCACCAAGTGCACCCTCGAGTTCCAGGT GATTACTGGCGGTCACTACGATGTAGATTGTCGATTAGAAGATCCTGATGGTAATGTGTT ATACAAAGAGATGAAGAAACAGTATGATAGTTTTACCTTCACAGCCTCCAAAAATGGGAC ATACAAATTTTGCTTCAGCAATGAATTTTCTACATTCACACATAAAACTGTGTATTTTGA TTTTCAAGTTGGAGAAGACCCACCCTTGTTTCCTAGTGAGAACCGAGTCAGTGCTCTTAC CCAGATGGAATCTGCCTGTGTTTCAATTCATGAAGCTCTGAAATCTGTCATCGACTATCA GACTCATTTCCGTTTGAGAGAAGCTCAAGGGCGAAGCCGAGCTGAGGATCTAAATACAAG AGTGGCCTATTGGTCAGTAGGAGAAGCCCTCATTCTTCTGGTGGTTAGCATAGGGCAGGT ATTTCTTCTGAAAAGCTTTTTCTCAGATAAAAGAACCACAACAACTCGTGTTGGATCATA ACTACGCTTTGAGAATTGGTGCCCCATTGCCGCTGTAATATTGCTGTCCTCTAATTAGTT TTAGGTACCGAAGAACTTGATATTGGCAACATTTTTAGAACCTTACTCATACACTTGTTG GGGGGGATGTACAGTGCATAACCCCAAGCTGTGGAAAGGACACTTTTTTCAATTTGTAAG GGTAGAAAAACTTTGGAACTTACTTTGGGCTATTCATAAATATTCAGTACAATGATCTAC TCTTTCTTGGTTGTTTCTATCTGTTCTTCTTACACTAAACTTTGGTATTTTGATTCCTTT TATCCGTTTAAAAGTACTTTTCTTGTAGGTAGTGGATATTTTAAAAACCTTCGATTTAAT GTCTACATGTGTTATGGAGGAAGAAAATTGCCTTTGTTTATAGTAAATAAAGTTTTGTTT TTAAGAAAACCAGATGTGATTAACTGTAGCCCAAGCCCTATTCTGCACTGTTTAATTTTA TGGGGAAAAAAAAATTGACCATAGAAATATTAGTTGATATTGATATAATTTTAAATTGGT ACATCATGTTTAATTTATTTCTCAGTATCTTGGAAAATGTCAGCTTTGTCGTTTGGCTTT ATTTTATGATATCTAAGCAGAAATGTTATTTTTTTCATAAAGACATTCTTACCACACAGA GACTAGTATGTTTGAGTAACACAATAGAGTTTATATGGGCCTTATAAATCAGACTGTTGT TAACAGAATAAGACACTATGATGGTGGGGGCAGGCTGAAGTGAGAAAACTTGTGTTGAGT TTCGGCATGTATTAAATTTTCTGTTCTTTTAAGAAGAAAAAAGTGATCTGTTTCATTTTC AACATTTAAATTGACTGATTCTTGCTCTTATGTGACTTTAATGTCTGAGTCATCCCAGCT AAATTGATAGTTGTAGTATAGTATTGTAAAAGTGCCATGCATTTTATTTGTAAGGGTGTT GATGCACTGAGAAGTTAGTTTTTTTTTTTCTTTCTTTCTTTTGTTTCTGTTTTATCTTGC ACATGTAACTTGTACAATCTCTGATTAGTAGCCCTAAGGTGATTTAAAAATGTAGAATGC TGTGTGTGTTTCTCATTTGATAATCTTCATTGATTGTACCACATCTAGTGAATATTAAAT AGTACATTTTCTATACACTATAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 635-727, - strand, RNAz p=0.767561 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 635-727, - strand, RNAz p=0.767561 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 32-1893, gnl|bosTau2|chr5 (61361207-61359329) | |
| 32-1893, gnl|Hg17|chr5 (114989541-114978898) | |
| 32-1893, gnl|Mm7|chr18 (46974982-46965111) | |
| 476-727, gnl|bosTau2|chr21 (18546168-18546422) | |
| 476-727, gnl|canFam2|chr3 (60700577-60700308) | |
| 476-727, gnl|danRer3|chr7 (20920485-20920751) | |
| 476-727, gnl|dasNov1|scaffold_22076 (3516-3265) | |
| 476-727, gnl|echTel1|scaffold_292531 (109698-109429) | |
| 476-727, gnl|fr1|chrUn (144639400-144639146) | |
| 476-727, gnl|galGal2|chr10 (20591745-20592012) | |
| 476-727, gnl|hg17|chr15 (77393152-77393421) | |
| 476-727, gnl|Hg17|chr15 (77393151-77393405) | |
| 476-727, gnl|loxAfr1|scaffold_6523 (22055-22324) | |
| 476-727, gnl|mm7|chr9 (89331528-89331259) | |
| 476-727, gnl|Mm7|chr9 (89331527-89331273) | |
| 476-727, gnl|monDom2|scaffold_45 (8717659-8717391) | |
| 476-727, gnl|oryCun1|scaffold_152000 (15613-15867) | |
| 476-727, gnl|panTro1|chr16 (78102963-78103232) | |
| 476-727, gnl|rheMac2|chr7 (58439396-58439665) | |
| 476-727, gnl|rn3|chr8 (94615770-94615507) | |
| 476-727, gnl|tetNig1|chr12 (7800452-7800713) | |
| 476-727, gnl|xenTro1|scaffold_2 (7201988-7202265) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-1893, gnl|bosTau2|chr5 (61361207-61359329) | |
| 32-1893, gnl|Hg17|chr5 (114989541-114978898) | |
| 32-1893, gnl|Mm7|chr18 (46974982-46965111) | |
| 476-727, gnl|bosTau2|chr21 (18546168-18546422) | |
| 476-727, gnl|canFam2|chr3 (60700577-60700308) | |
| 476-727, gnl|danRer3|chr7 (20920485-20920751) | |
| 476-727, gnl|dasNov1|scaffold_22076 (3516-3265) | |
| 476-727, gnl|echTel1|scaffold_292531 (109698-109429) | |
| 476-727, gnl|fr1|chrUn (144639400-144639146) | |
| 476-727, gnl|galGal2|chr10 (20591745-20592012) | |
| 476-727, gnl|hg17|chr15 (77393152-77393421) | |
| 476-727, gnl|Hg17|chr15 (77393151-77393405) | |
| 476-727, gnl|loxAfr1|scaffold_6523 (22055-22324) | |
| 476-727, gnl|mm7|chr9 (89331528-89331259) | |
| 476-727, gnl|Mm7|chr9 (89331527-89331273) | |
| 476-727, gnl|monDom2|scaffold_45 (8717659-8717391) | |
| 476-727, gnl|oryCun1|scaffold_152000 (15613-15867) | |
| 476-727, gnl|panTro1|chr16 (78102963-78103232) | |
| 476-727, gnl|rheMac2|chr7 (58439396-58439665) | |
| 476-727, gnl|rn3|chr8 (94615770-94615507) | |
| 476-727, gnl|tetNig1|chr12 (7800452-7800713) | |
| 476-727, gnl|xenTro1|scaffold_2 (7201988-7202265) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| pgl (0.592417) | |
| mgm (0.541028) | |
| liv (0.438853) | |
| ret (0.3862) | |
| rec (0.346141) | |
| mga (0.32041) | |
| isp (0.300752) | |
| ski (0.29347) | |
| cte (0.29274) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cly (0.120642) | |
| cbl (0.114797) | |
| eje (0.0988338) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.592417) | |
| mgm (0.541028) | |
| liv (0.438853) | |
| ret (0.3862) | |
| rec (0.346141) | |
| mga (0.32041) | |
| isp (0.300752) | |
| ski (0.29347) | |
| cte (0.29274) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cly (0.120642) | |
| cbl (0.114797) | |
| eje (0.0988338) |