Non-Coding RNA Search

Ss1.1-Lym1-jns77_D08.f.5

Sequence:


               
               CACTTATCCCTTATGAGATTCCAGAAAGAGTCACCAAGATCCTGTTCCCAGAGAGTGGGG
TCATTGGCCAAAGGGAACAAAGAGTAGGTAGAAAAACTTACAGGTTTCTCAAAGTGAAGA
ATGACGGGGGAACTCCAGCCAAGTTCCTGCCATCCTCTGAGGCAATGAACTTCTCTTCAT
GGAAGTCCAGGGTAAAGGCAGAGGTCAGGGCCATATCGGAGCTTATTATACACAAACACT
TCTAGAGTTACCCATCCTTGTTCTACTTTGGGGCTGTTAAACGCCTCCTGCTCCTCAGCT
TAGGAGGAACATGTCCAAGAAACTTTTTGAACCCTGTAGTATTTGTTGGAGGGACAGGCT
CCCTTCCTAGCTCCCCTACTTTCTGCCTCCCTGCATCTCAAGACAGAGAGGTCTTGTACA
GATCTCTCTGCCCTCTTCTTTTCCCTTCGGAATAACTTCCTATTTCAGGGAAGGGGAATG
ATGTCACTTACACCCTGGGACTACTTGTCTGGATAGGCTGGGGGCCACGAATCCCAAGGG
GCAATGTCTCATAATAAAAGTTGTATTTTTACACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTATCCCTTATGAGATTCCAGAAAGAGTCACCAAGATCCTGTTCCCAGAGAGTGGGG
TCATTGGCCAAAGGGAACAAAGAGTAGGTAGAAAAACTTACAGGTTTCTCAAAGTGAAGA
ATGACGGGGGAACTCCAGCCAAGTTCCTGCCATCCTCTGAGGCAATGAACTTCTCTTCAT
GGAAGTCCAGGGTAAAGGCAGAGGTCAGGGCCATATCGGAGCTTATTATACACAAACACT
TCTAGAGTTACCCATCCTTGTTCTACTTTGGGGCTGTTAAACGCCTCCTGCTCCTCAGCT
TAGGAGGAACATGTCCAAGAAACTTTTTGAACCCTGTAGTATTTGTTGGAGGGACAGGCT
CCCTTCCTAGCTCCCCTACTTTCTGCCTCCCTGCATCTCAAGACAGAGAGGTCTTGTACA
GATCTCTCTGCCCTCTTCTTTTCCCTTCGGAATAACTTCCTATTTCAGGGAAGGGGAATG
ATGTCACTTACACCCTGGGACTACTTGTCTGGATAGGCTGGGGGCCACGAATCCCAAGGG
GCAATGTCTCATAATAAAAGTTGTATTTTTACACGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-118, - strand, RNAz p=0.731758
               

               
               348-536, + strand, RNAz p=0.998398

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.731758
               

               
               348-536, + strand, RNAz p=0.998398

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               348-536, DB816580 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|DB816580.1|), blast E-value=0, identity=100% 
               

               
               360-473, AJ688246 KN261 Bos taurus cDNA clone KN261-047_O01, mRNA sequence 
(emb|AJ688246.1|), blast E-value=9e-16, identity=85.09% 
               

               
               360-473, AM034133 KN-252-spleen, Bos indicus Bos indicus cDNA clone 
(emb|AM034133.1|), blast E-value=9e-16, identity=85.09% 
               

               
               360-473, AM037804 KN-252-spleen, Bos taurus Bos taurus cDNA clone 
(emb|AM037804.1|), blast E-value=9e-16, identity=85.09% 
               

               
               360-473, 4064534 BARC 10BOV Bos taurus cDNA clone 10BOV11_B15 3', mRNA 
(gb|CK941203.1|), blast E-value=9e-16, identity=85.09% 
               

               
               360-473, 4071318 BARC 10BOV Bos taurus cDNA clone 10BOV19_M07 5', mRNA 
(gb|CK946637.1|), blast E-value=9e-16, identity=85.09%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               348-536, DB816580 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|DB816580.1|), blast E-value=0, identity=100% 
               

               
               360-473, AJ688246 KN261 Bos taurus cDNA clone KN261-047_O01, mRNA sequence 
(emb|AJ688246.1|), blast E-value=9e-16, identity=85.09% 
               

               
               360-473, AM034133 KN-252-spleen, Bos indicus Bos indicus cDNA clone 
(emb|AM034133.1|), blast E-value=9e-16, identity=85.09% 
               

               
               360-473, AM037804 KN-252-spleen, Bos taurus Bos taurus cDNA clone 
(emb|AM037804.1|), blast E-value=9e-16, identity=85.09% 
               

               
               360-473, 4064534 BARC 10BOV Bos taurus cDNA clone 10BOV11_B15 3', mRNA 
(gb|CK941203.1|), blast E-value=9e-16, identity=85.09% 
               

               
               360-473, 4071318 BARC 10BOV Bos taurus cDNA clone 10BOV19_M07 5', mRNA 
(gb|CK946637.1|), blast E-value=9e-16, identity=85.09%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_181720, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_181720, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-574, gnl|bosTau2|chr3 (7748176-7748749)
               

               
               1-574, gnl|Hg17|chr1 (157830385-157829808)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-574, gnl|bosTau2|chr3 (7748176-7748749)
               

               
               1-574, gnl|Hg17|chr1 (157830385-157829808)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ill (0.175593)
               

               
               csp (0.161186)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)

	1-118, - strand, RNAz p=0.731758
	348-536, + strand, RNAz p=0.998398

	348-536, DB816580 full-length enriched swine cDNA library, adult spleen Sus (dbj\|DB816580.1\|), blast E-value=0, identity=100%
	360-473, AJ688246 KN261 Bos taurus cDNA clone KN261-047_O01, mRNA sequence (emb\|AJ688246.1\|), blast E-value=9e-16, identity=85.09%
	360-473, AM034133 KN-252-spleen, Bos indicus Bos indicus cDNA clone (emb\|AM034133.1\|), blast E-value=9e-16, identity=85.09%
	360-473, AM037804 KN-252-spleen, Bos taurus Bos taurus cDNA clone (emb\|AM037804.1\|), blast E-value=9e-16, identity=85.09%
	360-473, 4064534 BARC 10BOV Bos taurus cDNA clone 10BOV11_B15 3', mRNA (gb\|CK941203.1\|), blast E-value=9e-16, identity=85.09%
	360-473, 4071318 BARC 10BOV Bos taurus cDNA clone 10BOV19_M07 5', mRNA (gb\|CK946637.1\|), blast E-value=9e-16, identity=85.09%

	1-574, gnl\|bosTau2\|chr3 (7748176-7748749)
	1-574, gnl\|Hg17\|chr1 (157830385-157829808)