Non-Coding RNA Search

Ss1.1-Lym1-jns78_E08.f.5

Sequence:


               
               GTGGCTGACAGGAAGCCCGCCGCCTTGCCTGCTGCCCGCCAGTGTCTGTGGCGTTGGCAT
CGGCTCGGGCAGGTGTGTGGGCTCAGGATGAGGTGGCCGCAGTGAGGAGCGCCTGCTCTC
AGCCCTGCAGGTAGAGTGGCCAGGAGTGGACATGGGCCCAGAGACAGAGCTGCTGTGGCC
GGGGGCGGCCCTGCTGCTGCTGGTGGGGGCCGCGGCCGGCCTGTGTGTCCGCTGTTCCCG
CCCAGGTGCAAAGAGGTCTGAGAAAATCTATGAGCAGAGGAGCCTGGAGAATCAGCAGAG
CTTTGCAGTGGCCCGGACCTACACCTTGGTCAGGGAGGCCTGGCCAGAGCCCCTGATGGA
CACGGCCTCCAATGTGACATCAACAAGGAAGGACAAGCTGCTGCAGTTCTCCCCCAGCCT
TGAGGATCCCGACTCCTCCAGGTACCAGTACTTCAGCAAAGGAAGCAGACCCAGATCAGA
TGCAGTCTACATAGACCCCTTGGCGACCGAGGATTATTACAACTGGGGGCAGTCCCAGAA
GCCCTCGGAAGATGACGATGACACCAATTCCTATGAGAATGTGCTCATCTGTAAGCCACC
GAAAATCGAATCAGGGGACGAGGGGTCTGAGGATTATCAGAACTCGGCATCCATCCAGCA
GTGGCGGGAGTCCAAGAGAGTCGTGGAGCCTGTCACGAGGGAAGCACCACCCTCCCCGGG
AGGAAGCCCAGACGAGGAGCCCGATTACGTGAACGGCGACGTGGCGGCCACCAAAGCCTA
AGGCACACCTGGAGGAAGGAGCCCAGGAACCATTTATCATCACCCCCCCAGGATCCCTTC
TCCAGAGCTGCTCAACTTCTAGACTCTCCCCAGCTGTTCCTGGAGGACCACCCATCAGGC
CACCGGGCACCCAGCCCAGGAGCAGACACTTGCCCAGGAATGGCCCTCTGACTGGCTCCC
GTGGGCGGGGCAGGAGCCTGGCACCCAGGGCAGCTGCCACGGTGGTATGATGCCCAGGAC
TTTAGGCGGTAGCATCTCCTTAACCACACTTAAAATGTACTACATGGGTGTTTATGTCCT
TTTTTGCTTTGGATCTTGATCCCAAAATTGCTTACTAATGTCAGTTGCTGGGATTTTTTC
GTGATGGATAAGCTTGTACAGTTAACTTATAGAGGTGGGACTGTATGTAACGCTCTGCGC
CTCTGGGCAGAGGTCTGTGTCTATCTGGTCTCCTACAAGCATTACAGGTACTAAACGTCA
GCAGTTAGGGGAGTCCTGTGTGCCCTTCTTTGTTGACTGATTTCGAGACGCGGCCCTGAG
CCATCCTGACGACCCTTGGGTGGGAGCGTCTGCTGTGGACGGAGAGCGTGTCGGTTCTGG
AGAAAGGCAGGCAGACCCGAGTGGCCCTGAGTGACGTCACCTGGATGCCCTAAATCCTCA
GCTGATGGGGCAGAAACGTGACTGTCTCATGTGAAGGGCAGGGGCCCACGTCAGAAACAC
GAGTCAAAATGCCTCATCCAACCAAAAATGTCTCAATAAACTGTTCCAGTTTAAGAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCTGACAGGAAGCCCGCCGCCTTGCCTGCTGCCCGCCAGTGTCTGTGGCGTTGGCAT
CGGCTCGGGCAGGTGTGTGGGCTCAGGATGAGGTGGCCGCAGTGAGGAGCGCCTGCTCTC
AGCCCTGCAGGTAGAGTGGCCAGGAGTGGACATGGGCCCAGAGACAGAGCTGCTGTGGCC
GGGGGCGGCCCTGCTGCTGCTGGTGGGGGCCGCGGCCGGCCTGTGTGTCCGCTGTTCCCG
CCCAGGTGCAAAGAGGTCTGAGAAAATCTATGAGCAGAGGAGCCTGGAGAATCAGCAGAG
CTTTGCAGTGGCCCGGACCTACACCTTGGTCAGGGAGGCCTGGCCAGAGCCCCTGATGGA
CACGGCCTCCAATGTGACATCAACAAGGAAGGACAAGCTGCTGCAGTTCTCCCCCAGCCT
TGAGGATCCCGACTCCTCCAGGTACCAGTACTTCAGCAAAGGAAGCAGACCCAGATCAGA
TGCAGTCTACATAGACCCCTTGGCGACCGAGGATTATTACAACTGGGGGCAGTCCCAGAA
GCCCTCGGAAGATGACGATGACACCAATTCCTATGAGAATGTGCTCATCTGTAAGCCACC
GAAAATCGAATCAGGGGACGAGGGGTCTGAGGATTATCAGAACTCGGCATCCATCCAGCA
GTGGCGGGAGTCCAAGAGAGTCGTGGAGCCTGTCACGAGGGAAGCACCACCCTCCCCGGG
AGGAAGCCCAGACGAGGAGCCCGATTACGTGAACGGCGACGTGGCGGCCACCAAAGCCTA
AGGCACACCTGGAGGAAGGAGCCCAGGAACCATTTATCATCACCCCCCCAGGATCCCTTC
TCCAGAGCTGCTCAACTTCTAGACTCTCCCCAGCTGTTCCTGGAGGACCACCCATCAGGC
CACCGGGCACCCAGCCCAGGAGCAGACACTTGCCCAGGAATGGCCCTCTGACTGGCTCCC
GTGGGCGGGGCAGGAGCCTGGCACCCAGGGCAGCTGCCACGGTGGTATGATGCCCAGGAC
TTTAGGCGGTAGCATCTCCTTAACCACACTTAAAATGTACTACATGGGTGTTTATGTCCT
TTTTTGCTTTGGATCTTGATCCCAAAATTGCTTACTAATGTCAGTTGCTGGGATTTTTTC
GTGATGGATAAGCTTGTACAGTTAACTTATAGAGGTGGGACTGTATGTAACGCTCTGCGC
CTCTGGGCAGAGGTCTGTGTCTATCTGGTCTCCTACAAGCATTACAGGTACTAAACGTCA
GCAGTTAGGGGAGTCCTGTGTGCCCTTCTTTGTTGACTGATTTCGAGACGCGGCCCTGAG
CCATCCTGACGACCCTTGGGTGGGAGCGTCTGCTGTGGACGGAGAGCGTGTCGGTTCTGG
AGAAAGGCAGGCAGACCCGAGTGGCCCTGAGTGACGTCACCTGGATGCCCTAAATCCTCA
GCTGATGGGGCAGAAACGTGACTGTCTCATGTGAAGGGCAGGGGCCCACGTCAGAAACAC
GAGTCAAAATGCCTCATCCAACCAAAAATGTCTCAATAAACTGTTCCAGTTTAAGAGCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|13649490|gb|AAK37430.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|13649490|gb|AAK37430.1|

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               1-122, gnl|bosTau2|chr25 (29936226-29936347)
               

               
               1-122, gnl|hg17|chr7 (73068839-73069327)
               

               
               1-122, gnl|Hg17|chr7 (73068953-73069069)
               

               
               1-122, gnl|loxAfr1|scaffold_18978 (25936-26434)
               

               
               1-122, gnl|panTro1|chr6 (74808439-74808927)
               

               
               1-122, gnl|rn3|chr12 (23029765-23030224)
               


               
               878-1559, gnl|bosTau2|chr25 (28335129-28335793)
               

               
               878-1559, gnl|Hg17|chr7 (73088047-73088819)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-122, gnl|bosTau2|chr25 (29936226-29936347)
               

               
               1-122, gnl|hg17|chr7 (73068839-73069327)
               

               
               1-122, gnl|Hg17|chr7 (73068953-73069069)
               

               
               1-122, gnl|loxAfr1|scaffold_18978 (25936-26434)
               

               
               1-122, gnl|panTro1|chr6 (74808439-74808927)
               

               
               1-122, gnl|rn3|chr12 (23029765-23030224)
               


               
               878-1559, gnl|bosTau2|chr25 (28335129-28335793)
               

               
               878-1559, gnl|Hg17|chr7 (73088047-73088819)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               cje (0.330469)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	1-122, gnl\|bosTau2\|chr25 (29936226-29936347)
	1-122, gnl\|hg17\|chr7 (73068839-73069327)
	1-122, gnl\|Hg17\|chr7 (73068953-73069069)
	1-122, gnl\|loxAfr1\|scaffold_18978 (25936-26434)
	1-122, gnl\|panTro1\|chr6 (74808439-74808927)
	1-122, gnl\|rn3\|chr12 (23029765-23030224)

	878-1559, gnl\|bosTau2\|chr25 (28335129-28335793)
	878-1559, gnl\|Hg17\|chr7 (73088047-73088819)

	cje (0.330469)
	mgp (0.230681)
	col (0.195008)
	fty (0.17584)
	ton (0.1755)
	cut (0.169924)
	csp (0.161186)
	spl (0.143184)
	pty (0.142714)
	cst (0.140036)
	hlv (0.139256)
	pla (0.133672)
	kid (0.129735)
	cly (0.120642)
	med (0.116252)
	nbm (0.0993246)