Non-Coding RNA Search

Ss1.1-Lym1-jns84_G05.f.5

Sequence:


               
               TGAGGAGGACAGAGAGTTGGACATAATCCCCCTTGGAGAACCTGGGTTCCTGATCGTCAG
AGCCTCTGTCTCCAGTGGAGGGTGTGCTGCAGGCTCCCGAGTCAGGACCCTGAGTGGGCC
GCCTCCCTCTGCTGCCCTCCCAGCTCACGGCCCTGCTCCTCCCCGACCGGAGGAGAATCA
GGTTGTTGACAGATGACCTGGAACCTGAATCGCATCTCTCCCTGCACAGAAGTAGCCGCT
GACTTGTCCTCTTCTAGCCTAGTTCTTGTGTGAATAGTGACTCCTCCAAAGGCTGAGGAT
GACCTGGTGCCCCAGCCGCCTCCCCACCCCACCCAAGCTCTCTCTAGGGTGGTCACACTC
TGCGTGGCCTCCTTCAGCTCCGAGCTAATCTGGAGCCTTTTTGTGTCTGAAGTGCCTTCC
TTGCCCTAGTCTCATGGCCGCCACGTGCACTGTGTGGCCGGTCCCCGGCAGTTACACATG
AGAGGGACACGGACTGTGAGTTTCCCTCGTTTCCACTCAGCCTCACACCATCCTACCCGC
CCCTCACTGTGTCAGGATCAGGTTGTTTCCAGTTTCTCCCTTGTGGGGTGGCTGCAGGCC
TGTGAACTTCCTCCCACGGCCCCCAGGCACCTGCCTATTGAGGAAGTCCAGAGCTCCCAG
GGGCACCAGGCCTGCCATGCTCTTCCACCTCCCCCCACATTTAAAAAAGGTACCCTTGCT
GTCGTCTCTTGGGGTCTCTCTCTCGCTTCCCATTCAACCCAAAGTCTAGGCGATAAGGTG
TCTACTTTTGCTTCCCGGTCACCAGTGTTCCTCCCAGATGCCCATTTGATGTGGGTGCTG
CTGGCTGTTGCAGAGTGCCCCTCCCACCCCTGCGCAGTGTCTCCTTGTATGAGCAGCAGC
TCCCCTGCCCGTTGCCCACCTTGTCCTCGCTCTTCCGGGTTGTGCAATAACTCTCCCAGC
TAGTGGTCTTCCCCACAGGCCCTCTGTCCCTTTCAGTGCCCAGCCACTGGGGCAGGACAG
TCTGCCCAGAAGGAATGTTAGCCACCTCCTCTGTTGCTGTCATTCTCCTGACCCTGGTGG
CACACCAGTGAACCCTGGAGCATCATCGTAGCAGTCCATCATTTAGGAATATCTGTTGGA
AAAACATCCTCACCACAATGGGGCATTAACATGTCAGTGTCTGGGCATGACATCTGTGTG
AGGCGACACCGTCACCCAGAGGGTCATGTTTATGAGGCGAGGAAGATCCCCCTGCGCCTC
AGCCACACATGGACAGCCTGGTCCACCCGGCTGGATCTGACCGGTTCTGAGTACCACCCT
TTCCTCGGGTACAGAGTCAAGTGTTTATGTGATGAGAGTATATACACCTCGTTTTTCACT
TCTTAATAAACAGCTGAGGATGAGCTGAGGCCGCTGGTGCCCTGAGCAACTCCTAATGCA
AATGTGGACAAAGTGTCTTTGTGTTTTTCTACTTTAGCCTGTTCATGTTATGGACCAAAT
TTCAACAACGAACTCAAGGAAAATTTGTACCTGCCGTATTTATGCTTTCATGTAAAAGGG
TTTTGGAGGGGGGGCTCTTTTCACCTTCAGTGAACTTTTTCCAAGTCCTTTTCTCACTGT
TTCTGTCTGGTTTTGAAACAAATTACAGTTTTGTATGGATTTTTTTAAATGTGCATTTTG
AAACAAATGATCAAATATTTTTGAGATAACTGAATAAAAGGCAGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGAGGACAGAGAGTTGGACATAATCCCCCTTGGAGAACCTGGGTTCCTGATCGTCAG
AGCCTCTGTCTCCAGTGGAGGGTGTGCTGCAGGCTCCCGAGTCAGGACCCTGAGTGGGCC
GCCTCCCTCTGCTGCCCTCCCAGCTCACGGCCCTGCTCCTCCCCGACCGGAGGAGAATCA
GGTTGTTGACAGATGACCTGGAACCTGAATCGCATCTCTCCCTGCACAGAAGTAGCCGCT
GACTTGTCCTCTTCTAGCCTAGTTCTTGTGTGAATAGTGACTCCTCCAAAGGCTGAGGAT
GACCTGGTGCCCCAGCCGCCTCCCCACCCCACCCAAGCTCTCTCTAGGGTGGTCACACTC
TGCGTGGCCTCCTTCAGCTCCGAGCTAATCTGGAGCCTTTTTGTGTCTGAAGTGCCTTCC
TTGCCCTAGTCTCATGGCCGCCACGTGCACTGTGTGGCCGGTCCCCGGCAGTTACACATG
AGAGGGACACGGACTGTGAGTTTCCCTCGTTTCCACTCAGCCTCACACCATCCTACCCGC
CCCTCACTGTGTCAGGATCAGGTTGTTTCCAGTTTCTCCCTTGTGGGGTGGCTGCAGGCC
TGTGAACTTCCTCCCACGGCCCCCAGGCACCTGCCTATTGAGGAAGTCCAGAGCTCCCAG
GGGCACCAGGCCTGCCATGCTCTTCCACCTCCCCCCACATTTAAAAAAGGTACCCTTGCT
GTCGTCTCTTGGGGTCTCTCTCTCGCTTCCCATTCAACCCAAAGTCTAGGCGATAAGGTG
TCTACTTTTGCTTCCCGGTCACCAGTGTTCCTCCCAGATGCCCATTTGATGTGGGTGCTG
CTGGCTGTTGCAGAGTGCCCCTCCCACCCCTGCGCAGTGTCTCCTTGTATGAGCAGCAGC
TCCCCTGCCCGTTGCCCACCTTGTCCTCGCTCTTCCGGGTTGTGCAATAACTCTCCCAGC
TAGTGGTCTTCCCCACAGGCCCTCTGTCCCTTTCAGTGCCCAGCCACTGGGGCAGGACAG
TCTGCCCAGAAGGAATGTTAGCCACCTCCTCTGTTGCTGTCATTCTCCTGACCCTGGTGG
CACACCAGTGAACCCTGGAGCATCATCGTAGCAGTCCATCATTTAGGAATATCTGTTGGA
AAAACATCCTCACCACAATGGGGCATTAACATGTCAGTGTCTGGGCATGACATCTGTGTG
AGGCGACACCGTCACCCAGAGGGTCATGTTTATGAGGCGAGGAAGATCCCCCTGCGCCTC
AGCCACACATGGACAGCCTGGTCCACCCGGCTGGATCTGACCGGTTCTGAGTACCACCCT
TTCCTCGGGTACAGAGTCAAGTGTTTATGTGATGAGAGTATATACACCTCGTTTTTCACT
TCTTAATAAACAGCTGAGGATGAGCTGAGGCCGCTGGTGCCCTGAGCAACTCCTAATGCA
AATGTGGACAAAGTGTCTTTGTGTTTTTCTACTTTAGCCTGTTCATGTTATGGACCAAAT
TTCAACAACGAACTCAAGGAAAATTTGTACCTGCCGTATTTATGCTTTCATGTAAAAGGG
TTTTGGAGGGGGGGCTCTTTTCACCTTCAGTGAACTTTTTCCAAGTCCTTTTCTCACTGT
TTCTGTCTGGTTTTGAAACAAATTACAGTTTTGTATGGATTTTTTTAAATGTGCATTTTG
AAACAAATGATCAAATATTTTTGAGATAACTGAATAAAAGGCAGAATT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               358-1018, gnl|bosTau2|chr23 (22379493-22378830)
               

               
               358-1018, gnl|Hg17|chr6 (52471723-52470941)
               

               
               358-1018, gnl|Mm7|chr1 (21193491-21192714)
               


               
               1027-1723, gnl|bosTau2|chr23 (22378798-22378055)
               

               
               1027-1723, gnl|Hg17|chr6 (52470907-52470173)
               

               
               1027-1723, gnl|Mm7|chr1 (21192680-21191915)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               358-1018, gnl|bosTau2|chr23 (22379493-22378830)
               

               
               358-1018, gnl|Hg17|chr6 (52471723-52470941)
               

               
               358-1018, gnl|Mm7|chr1 (21193491-21192714)
               


               
               1027-1723, gnl|bosTau2|chr23 (22378798-22378055)
               

               
               1027-1723, gnl|Hg17|chr6 (52470907-52470173)
               

               
               1027-1723, gnl|Mm7|chr1 (21192680-21191915)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               cov (0.396458)
               

               
               cga (0.279096)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               clu (0.119646)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               cga (0.279096)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               clu (0.119646)

	358-1018, gnl\|bosTau2\|chr23 (22379493-22378830)
	358-1018, gnl\|Hg17\|chr6 (52471723-52470941)
	358-1018, gnl\|Mm7\|chr1 (21193491-21192714)

	1027-1723, gnl\|bosTau2\|chr23 (22378798-22378055)
	1027-1723, gnl\|Hg17\|chr6 (52470907-52470173)
	1027-1723, gnl\|Mm7\|chr1 (21192680-21191915)

	cov (0.396458)
	cga (0.279096)
	cli (0.152812)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	lyg (0.133103)
	ute (0.132784)
	clu (0.119646)